Wall clock time and date at job start Sat Apr 11 2020 07:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00022 * 2 1 4 4 C 1.52999 * 108.87713 * 63.66120 * 3 2 1 5 5 N 1.46503 * 109.46849 * 56.15607 * 4 3 2 6 6 S 1.65598 * 120.00016 * 158.86752 * 5 4 3 7 7 O 1.42102 * 104.27598 * 308.92621 * 6 5 4 8 8 O 1.42103 * 104.27595 * 181.07073 * 6 5 4 9 9 C 1.81400 * 104.45160 * 65.00032 * 6 5 4 10 10 C 1.52994 * 109.47270 * 185.78385 * 9 6 5 11 11 C 1.50706 * 115.54736 * 298.39373 * 10 9 6 12 12 H 1.08000 * 119.99758 * 94.89661 * 11 10 9 13 13 C 1.37877 * 119.99990 * 274.61713 * 11 10 9 14 14 N 1.31516 * 119.99726 * 355.50748 * 13 11 10 15 15 Si 1.86803 * 120.00014 * 175.50777 * 13 11 10 16 16 H 1.48493 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47062 * 120.00094 * 15 13 11 18 18 H 1.48500 * 109.46789 * 239.99967 * 15 13 11 19 19 C 1.53001 * 117.50010 * 84.06256 * 10 9 6 20 20 C 1.52997 * 117.50012 * 152.72698 * 10 9 6 21 21 C 1.54236 * 108.89515 * 182.27327 * 3 2 1 22 22 C 1.50549 * 108.48625 * 40.58402 * 21 3 2 23 23 C 1.54069 * 112.41550 * 94.26908 * 22 21 3 24 24 C 1.54060 * 112.81543 * 318.28041 * 23 22 21 25 25 C 1.50476 * 112.49496 * 318.28327 * 24 23 22 26 26 C 1.45551 * 108.89369 * 305.06065 * 3 2 1 27 27 H 1.08996 * 109.47537 * 305.37075 * 1 2 3 28 28 H 1.09008 * 109.47016 * 65.37301 * 1 2 3 29 29 H 1.09001 * 109.47200 * 185.36796 * 1 2 3 30 30 H 1.09000 * 109.47595 * 296.15855 * 4 3 2 31 31 H 1.09000 * 109.47425 * 176.15099 * 4 3 2 32 32 H 0.97003 * 119.99584 * 338.86741 * 5 4 3 33 33 H 1.09000 * 109.47101 * 65.77831 * 9 6 5 34 34 H 1.08999 * 109.46505 * 305.78463 * 9 6 5 35 35 H 0.97003 * 119.99615 * 185.00221 * 14 13 11 36 36 H 1.09001 * 117.49916 * 215.00010 * 19 10 9 37 37 H 1.08996 * 117.49644 * 0.02562 * 19 10 9 38 38 H 1.09003 * 117.49772 * 359.97069 * 20 10 9 39 39 H 1.08994 * 117.50212 * 144.97941 * 20 10 9 40 40 H 1.09002 * 109.63108 * 160.38188 * 21 3 2 41 41 H 1.09006 * 109.62602 * 280.95858 * 21 3 2 42 42 H 1.08998 * 108.92343 * 333.50859 * 22 21 3 43 43 H 1.09002 * 108.91932 * 215.02094 * 22 21 3 44 44 H 1.08995 * 108.81229 * 197.41875 * 23 22 21 45 45 H 1.09003 * 108.72626 * 79.08228 * 23 22 21 46 46 H 1.08999 * 108.87682 * 197.51136 * 24 23 22 47 47 H 1.08998 * 108.87944 * 79.06309 * 24 23 22 48 48 H 1.08998 * 109.63072 * 334.44438 * 25 24 23 49 49 H 1.09001 * 109.62744 * 213.86185 * 25 24 23 50 50 H 1.08993 * 108.89427 * 62.03055 * 26 3 2 51 51 H 1.08996 * 108.89107 * 180.62264 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6248 2.0189 1.2974 5 7 2.0441 1.2083 2.4435 6 16 2.2456 1.9147 3.9277 7 8 3.0893 3.0295 3.6735 8 8 2.6712 0.8502 4.7674 9 6 0.5826 2.4683 4.3951 10 6 0.6590 3.2712 5.6952 11 6 1.1742 2.5183 6.8948 12 1 2.2201 2.5730 7.1583 13 6 0.3091 1.7643 7.6591 14 7 -0.9792 1.7722 7.3950 15 14 0.9671 0.7315 9.0698 16 1 2.4403 0.8955 9.1582 17 1 0.3428 1.1760 10.3418 18 1 0.6410 -0.6974 8.8311 19 6 1.0110 4.7564 5.5887 20 6 -0.4180 4.3310 5.9354 21 6 3.5454 1.1686 -0.0579 22 6 3.8902 0.0614 -1.0179 23 6 4.1712 0.5831 -2.4400 24 6 3.1826 1.6795 -2.8803 25 6 1.7654 1.3719 -2.4788 26 6 1.4793 2.0577 -1.1272 27 1 -0.3634 0.5948 0.8379 28 1 -0.3633 0.4283 -0.9343 29 1 -0.3634 -1.0232 0.0961 30 1 0.5443 2.1594 1.3277 31 1 2.1188 2.9896 1.3389 32 1 2.2036 0.2579 2.3329 33 1 -0.0614 1.6011 4.5409 34 1 0.1730 3.0961 3.6039 35 1 -1.5963 1.3004 7.9759 36 1 1.6151 5.1889 6.3863 37 1 1.1877 5.1615 4.5924 38 1 -1.1808 4.4565 5.1670 39 1 -0.7542 4.4835 6.9609 40 1 3.9837 2.1049 -0.4036 41 1 3.9290 0.9255 0.9331 42 1 3.0592 -0.6429 -1.0583 43 1 4.7746 -0.4605 -0.6525 44 1 4.1061 -0.2504 -3.1394 45 1 5.1825 0.9887 -2.4705 46 1 3.2279 1.7804 -3.9647 47 1 3.4801 2.6252 -2.4274 48 1 1.6395 0.2941 -2.3764 49 1 1.0795 1.7533 -3.2353 50 1 0.4012 2.1620 -1.0056 51 1 1.9310 3.0497 -1.1336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908364281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:45 Heat of formation + Delta-G solvation = -105.860154 kcal Electronic energy + Delta-G solvation = -30729.533349 eV Core-core repulsion = 26756.558807 eV Total energy + Delta-G solvation = -3972.974542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.69912 -36.74529 -36.47087 -36.21398 -35.09527 -34.65592 -32.43277 -32.02438 -31.43283 -28.20251 -26.97431 -26.55902 -25.45300 -24.77931 -22.92807 -21.17742 -20.29112 -19.65391 -19.39175 -18.61054 -17.18863 -16.73196 -16.45743 -16.29534 -15.78520 -15.38145 -15.11717 -14.97252 -14.66059 -14.47375 -14.09262 -13.77732 -13.50233 -13.34602 -13.21958 -13.14525 -12.78826 -12.55462 -12.23986 -12.01931 -11.93283 -11.80171 -11.43718 -11.25146 -11.20672 -11.14937 -11.03020 -10.94586 -10.93214 -10.71627 -10.64257 -10.54425 -10.43691 -10.37186 -10.27690 -10.09372 -9.69021 -9.61856 -9.15019 -9.01634 -8.53128 -8.08232 -6.12533 -4.25081 1.09307 3.30107 3.38180 3.39263 3.47315 3.71803 4.34151 4.39037 4.41928 4.59219 4.62169 4.80287 4.89157 4.97005 5.04251 5.10971 5.14095 5.15961 5.21665 5.23368 5.24106 5.34499 5.41535 5.50481 5.56882 5.59422 5.69323 5.72440 5.74384 5.81088 5.88293 5.91301 5.97637 6.02452 6.10829 6.11869 6.17768 6.24256 6.26524 6.37539 6.47811 6.61868 6.72759 6.99933 7.10173 7.22515 7.37168 7.46058 7.80740 8.20209 8.81352 9.47242 10.93981 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.003147 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.754000 B = 8895.448054 C = 9081.666562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.370 6.370 3 C 0.120 3.880 4 C 0.089 3.911 5 N -1.124 6.124 6 S 2.610 3.390 7 O -0.973 6.973 8 O -0.950 6.950 9 C -0.555 4.555 10 C 0.039 3.961 11 C -0.516 4.516 12 H 0.068 0.932 13 C 0.081 3.919 14 N -0.874 5.874 15 Si 0.893 3.107 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.279 1.279 19 C -0.208 4.208 20 C -0.134 4.134 21 C -0.102 4.102 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.111 4.111 26 C -0.151 4.151 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.416 0.584 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 -1.149 -20.950 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.289 6.289 3 C 0.080 3.920 4 C -0.039 4.039 5 N -0.883 5.883 6 S 2.706 3.294 7 O -0.963 6.963 8 O -0.940 6.940 9 C -0.688 4.688 10 C 0.037 3.963 11 C -0.553 4.553 12 H 0.086 0.914 13 C -0.124 4.124 14 N -0.510 5.510 15 Si 0.720 3.280 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.205 1.205 19 C -0.245 4.245 20 C -0.173 4.173 21 C -0.139 4.139 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.189 4.189 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.250 0.750 33 H 0.148 0.852 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.021 -1.197 -20.469 20.725 hybrid contribution -0.872 -0.621 0.570 1.213 sum 2.149 -1.818 -19.899 20.097 Atomic orbital electron populations 1.22844 0.81726 1.02848 1.00317 1.87937 1.19227 1.27023 1.94715 1.20336 0.95160 0.83742 0.92798 1.21907 0.99553 0.95538 0.86885 1.55861 1.86672 1.20654 1.25064 1.05051 0.78150 0.74362 0.71816 1.93489 1.64005 1.54771 1.84039 1.93553 1.80710 1.54641 1.65068 1.29996 1.21381 1.10930 1.06519 1.18282 1.01591 0.85707 0.90745 1.20580 0.95574 1.28560 1.10556 0.91352 1.24962 0.94750 0.95369 0.97337 1.70014 1.01687 1.41868 1.37414 0.86500 0.79901 0.80410 0.81212 1.19082 1.20990 1.20513 1.23178 1.00326 1.00333 1.00666 1.22502 0.89752 1.04168 1.00908 1.21380 0.91520 1.00126 1.00914 1.21275 1.02317 0.98796 0.93724 1.21917 0.98586 0.98095 0.96732 1.21350 0.94963 0.99089 1.00287 1.21224 0.96448 1.01861 0.95368 1.21155 1.01905 1.00391 0.95426 0.93311 0.93854 0.89763 0.91999 0.89393 0.74964 0.85242 0.88572 0.92840 0.89586 0.90961 0.91797 0.89238 0.90488 0.90413 0.89768 0.92464 0.92590 0.92642 0.92603 0.92091 0.90554 0.92113 0.91288 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.98 101.05 1.01 1.18 16 2 O -0.37 -3.96 6.73 -35.23 -0.24 -4.20 16 3 C 0.12 1.25 0.37 -93.49 -0.03 1.21 16 4 C 0.09 1.09 4.60 -4.04 -0.02 1.07 16 5 N -1.12 -16.83 4.90 -10.61 -0.05 -16.88 16 6 S 2.61 52.52 5.13 -107.50 -0.55 51.97 16 7 O -0.97 -21.16 17.43 -57.54 -1.00 -22.16 16 8 O -0.95 -22.82 17.60 -57.54 -1.01 -23.83 16 9 C -0.56 -11.50 5.94 37.15 0.22 -11.28 16 10 C 0.04 0.95 1.47 -155.66 -0.23 0.72 16 11 C -0.52 -14.22 7.95 -34.44 -0.27 -14.49 16 12 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 13 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 14 N -0.87 -24.17 12.64 55.43 0.70 -23.47 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.21 -4.56 9.95 -26.69 -0.27 -4.82 16 20 C -0.13 -3.07 9.14 -26.69 -0.24 -3.31 16 21 C -0.10 -1.10 4.83 -27.31 -0.13 -1.23 16 22 C -0.12 -1.19 5.25 -27.40 -0.14 -1.34 16 23 C -0.12 -0.94 5.85 -25.62 -0.15 -1.09 16 24 C -0.12 -0.90 5.31 -27.44 -0.15 -1.05 16 25 C -0.11 -0.86 5.34 -27.34 -0.15 -1.01 16 26 C -0.15 -1.28 3.46 -29.59 -0.10 -1.38 16 27 H 0.05 0.47 6.30 -51.93 -0.33 0.14 16 28 H 0.04 0.33 6.50 -51.92 -0.34 0.00 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 31 H 0.09 1.09 7.59 -51.93 -0.39 0.69 16 32 H 0.42 5.88 8.04 -34.47 -0.28 5.60 16 33 H 0.13 2.78 8.14 -51.92 -0.42 2.36 16 34 H 0.10 1.65 8.11 -51.92 -0.42 1.23 16 35 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 36 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 40 H 0.08 0.77 6.97 -51.93 -0.36 0.41 16 41 H 0.08 0.96 7.15 -51.93 -0.37 0.59 16 42 H 0.08 0.88 5.46 -51.93 -0.28 0.59 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.47 6.62 -51.93 -0.34 0.13 16 48 H 0.08 0.66 6.24 -51.93 -0.32 0.33 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.54 6.40 -51.93 -0.33 0.21 16 51 H 0.08 0.61 7.46 -51.93 -0.39 0.23 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -32.32 395.28 -10.67 -42.99 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.70 Total: 7.55 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: -0.75 Total: -34.69 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.65 Total: -40.34 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -2.25 Total: -50.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 52.52 SS G_CDS: -0.55 Total: 51.97 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.32 -10.67 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908364281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.869 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds