Wall clock time and date at job start Sat Apr 11 2020 07:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00022 * 2 1 4 4 C 1.52999 * 108.87713 * 63.66120 * 3 2 1 5 5 N 1.46503 * 109.46849 * 56.15607 * 4 3 2 6 6 S 1.65598 * 120.00016 * 158.86752 * 5 4 3 7 7 O 1.42102 * 104.27598 * 308.92621 * 6 5 4 8 8 O 1.42103 * 104.27595 * 181.07073 * 6 5 4 9 9 C 1.81400 * 104.45160 * 65.00032 * 6 5 4 10 10 C 1.52994 * 109.47270 * 185.78385 * 9 6 5 11 11 C 1.50706 * 115.54736 * 298.39373 * 10 9 6 12 12 H 1.08000 * 119.99758 * 94.89661 * 11 10 9 13 13 C 1.37877 * 119.99990 * 274.61713 * 11 10 9 14 14 N 1.31516 * 119.99726 * 355.50748 * 13 11 10 15 15 Si 1.86803 * 120.00014 * 175.50777 * 13 11 10 16 16 H 1.48493 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47062 * 120.00094 * 15 13 11 18 18 H 1.48500 * 109.46789 * 239.99967 * 15 13 11 19 19 C 1.53001 * 117.50010 * 84.06256 * 10 9 6 20 20 C 1.52997 * 117.50012 * 152.72698 * 10 9 6 21 21 C 1.54236 * 108.89515 * 182.27327 * 3 2 1 22 22 C 1.50549 * 108.48625 * 40.58402 * 21 3 2 23 23 C 1.54069 * 112.41550 * 94.26908 * 22 21 3 24 24 C 1.54060 * 112.81543 * 318.28041 * 23 22 21 25 25 C 1.50476 * 112.49496 * 318.28327 * 24 23 22 26 26 C 1.45551 * 108.89369 * 305.06065 * 3 2 1 27 27 H 1.08996 * 109.47537 * 305.37075 * 1 2 3 28 28 H 1.09008 * 109.47016 * 65.37301 * 1 2 3 29 29 H 1.09001 * 109.47200 * 185.36796 * 1 2 3 30 30 H 1.09000 * 109.47595 * 296.15855 * 4 3 2 31 31 H 1.09000 * 109.47425 * 176.15099 * 4 3 2 32 32 H 0.97003 * 119.99584 * 338.86741 * 5 4 3 33 33 H 1.09000 * 109.47101 * 65.77831 * 9 6 5 34 34 H 1.08999 * 109.46505 * 305.78463 * 9 6 5 35 35 H 0.97003 * 119.99615 * 185.00221 * 14 13 11 36 36 H 1.09001 * 117.49916 * 215.00010 * 19 10 9 37 37 H 1.08996 * 117.49644 * 0.02562 * 19 10 9 38 38 H 1.09003 * 117.49772 * 359.97069 * 20 10 9 39 39 H 1.08994 * 117.50212 * 144.97941 * 20 10 9 40 40 H 1.09002 * 109.63108 * 160.38188 * 21 3 2 41 41 H 1.09006 * 109.62602 * 280.95858 * 21 3 2 42 42 H 1.08998 * 108.92343 * 333.50859 * 22 21 3 43 43 H 1.09002 * 108.91932 * 215.02094 * 22 21 3 44 44 H 1.08995 * 108.81229 * 197.41875 * 23 22 21 45 45 H 1.09003 * 108.72626 * 79.08228 * 23 22 21 46 46 H 1.08999 * 108.87682 * 197.51136 * 24 23 22 47 47 H 1.08998 * 108.87944 * 79.06309 * 24 23 22 48 48 H 1.08998 * 109.63072 * 334.44438 * 25 24 23 49 49 H 1.09001 * 109.62744 * 213.86185 * 25 24 23 50 50 H 1.08993 * 108.89427 * 62.03055 * 26 3 2 51 51 H 1.08996 * 108.89107 * 180.62264 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6248 2.0189 1.2974 5 7 2.0441 1.2083 2.4435 6 16 2.2456 1.9147 3.9277 7 8 3.0893 3.0295 3.6735 8 8 2.6712 0.8502 4.7674 9 6 0.5826 2.4683 4.3951 10 6 0.6590 3.2712 5.6952 11 6 1.1742 2.5183 6.8948 12 1 2.2201 2.5730 7.1583 13 6 0.3091 1.7643 7.6591 14 7 -0.9792 1.7722 7.3950 15 14 0.9671 0.7315 9.0698 16 1 2.4403 0.8955 9.1582 17 1 0.3428 1.1760 10.3418 18 1 0.6410 -0.6974 8.8311 19 6 1.0110 4.7564 5.5887 20 6 -0.4180 4.3310 5.9354 21 6 3.5454 1.1686 -0.0579 22 6 3.8902 0.0614 -1.0179 23 6 4.1712 0.5831 -2.4400 24 6 3.1826 1.6795 -2.8803 25 6 1.7654 1.3719 -2.4788 26 6 1.4793 2.0577 -1.1272 27 1 -0.3634 0.5948 0.8379 28 1 -0.3633 0.4283 -0.9343 29 1 -0.3634 -1.0232 0.0961 30 1 0.5443 2.1594 1.3277 31 1 2.1188 2.9896 1.3389 32 1 2.2036 0.2579 2.3329 33 1 -0.0614 1.6011 4.5409 34 1 0.1730 3.0961 3.6039 35 1 -1.5963 1.3004 7.9759 36 1 1.6151 5.1889 6.3863 37 1 1.1877 5.1615 4.5924 38 1 -1.1808 4.4565 5.1670 39 1 -0.7542 4.4835 6.9609 40 1 3.9837 2.1049 -0.4036 41 1 3.9290 0.9255 0.9331 42 1 3.0592 -0.6429 -1.0583 43 1 4.7746 -0.4605 -0.6525 44 1 4.1061 -0.2504 -3.1394 45 1 5.1825 0.9887 -2.4705 46 1 3.2279 1.7804 -3.9647 47 1 3.4801 2.6252 -2.4274 48 1 1.6395 0.2941 -2.3764 49 1 1.0795 1.7533 -3.2353 50 1 0.4012 2.1620 -1.0056 51 1 1.9310 3.0497 -1.1336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908364281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:44 Heat of formation + Delta-G solvation = -126.707087 kcal Electronic energy + Delta-G solvation = -30730.437340 eV Core-core repulsion = 26756.558807 eV Total energy + Delta-G solvation = -3973.878533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.47597 -38.56278 -37.93712 -37.17732 -36.79087 -35.75998 -34.08699 -33.12622 -32.27444 -29.88959 -27.73268 -27.52228 -27.36747 -25.49609 -23.73610 -22.95398 -21.57576 -20.96369 -20.16188 -20.06194 -18.55405 -18.36978 -17.64305 -17.39008 -16.90420 -16.63877 -16.44271 -16.30742 -16.05860 -15.61901 -15.46199 -15.07864 -14.90553 -14.33171 -14.02824 -13.92536 -13.81820 -13.70382 -13.56489 -13.50456 -13.11292 -12.94080 -12.92541 -12.89974 -12.87159 -12.75950 -12.58620 -12.45276 -12.20202 -11.90415 -11.86908 -11.75562 -11.50077 -11.35532 -11.33600 -11.05904 -11.02599 -10.99978 -10.56467 -10.50579 -10.25470 -9.84790 -8.20477 -6.36566 -0.50225 1.34037 1.39272 1.50394 2.03396 2.38100 2.87858 2.98337 3.05798 3.35155 3.45990 3.58169 3.67267 3.93698 3.98910 4.12971 4.23033 4.23548 4.32515 4.38982 4.42325 4.45887 4.51268 4.53815 4.57178 4.59705 4.66880 4.76158 4.81928 4.85231 4.88651 4.99318 5.00690 5.02703 5.07953 5.19118 5.22822 5.26577 5.34053 5.40042 5.41213 5.44173 5.44404 5.58067 5.64143 5.70290 5.72900 6.12805 6.21162 6.38161 6.70491 7.36616 8.85495 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.003147 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.754000 B = 8895.448054 C = 9081.666562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.382 6.382 3 C 0.127 3.873 4 C 0.075 3.925 5 N -1.109 6.109 6 S 2.626 3.374 7 O -0.992 6.992 8 O -0.997 6.997 9 C -0.552 4.552 10 C 0.005 3.995 11 C -0.534 4.534 12 H 0.046 0.954 13 C 0.043 3.957 14 N -0.890 5.890 15 Si 0.933 3.067 16 H -0.275 1.275 17 H -0.269 1.269 18 H -0.276 1.276 19 C -0.195 4.195 20 C -0.130 4.130 21 C -0.107 4.107 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.107 4.107 26 C -0.152 4.152 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.421 0.579 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.265 0.735 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 -0.600 -23.222 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.301 6.301 3 C 0.087 3.913 4 C -0.052 4.052 5 N -0.871 5.871 6 S 2.723 3.277 7 O -0.982 6.982 8 O -0.987 6.987 9 C -0.684 4.684 10 C 0.003 3.997 11 C -0.572 4.572 12 H 0.064 0.936 13 C -0.160 4.160 14 N -0.527 5.527 15 Si 0.758 3.242 16 H -0.200 1.200 17 H -0.194 1.194 18 H -0.202 1.202 19 C -0.232 4.232 20 C -0.170 4.170 21 C -0.144 4.144 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.190 4.190 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.257 0.743 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.187 -0.643 -22.733 22.847 hybrid contribution -0.594 -0.785 1.223 1.570 sum 1.593 -1.428 -21.510 21.616 Atomic orbital electron populations 1.22983 0.80881 1.03403 1.01056 1.87938 1.20208 1.27214 1.94762 1.20289 0.94760 0.83800 0.92492 1.22307 1.00929 0.95416 0.86508 1.55362 1.86568 1.21008 1.24113 1.04277 0.77776 0.73473 0.72221 1.93456 1.64654 1.55499 1.84544 1.93484 1.81668 1.56114 1.67471 1.29866 1.21649 1.10844 1.06078 1.18413 1.03154 0.86852 0.91266 1.20754 0.94698 1.29404 1.12295 0.93556 1.25493 0.95149 0.96211 0.99181 1.70045 1.02013 1.42463 1.38133 0.85887 0.78948 0.79430 0.79924 1.19979 1.19444 1.20173 1.23234 0.99427 0.98565 1.01972 1.22439 0.90584 1.03530 1.00401 1.21408 0.92182 1.00823 1.00003 1.21228 1.01721 0.98281 0.94556 1.21896 0.99002 0.98582 0.95632 1.21360 0.94691 0.98653 1.00992 1.21195 0.96791 1.01270 0.95204 1.21166 1.02541 1.00413 0.94883 0.93716 0.92098 0.89247 0.89872 0.89239 0.74321 0.86205 0.84639 0.92571 0.90231 0.88103 0.89402 0.91580 0.89802 0.92623 0.90500 0.93045 0.92097 0.92428 0.91506 0.92096 0.91395 0.90721 0.90183 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.98 113.37 1.13 1.33 16 2 O -0.38 -7.54 6.73 -148.98 -1.00 -8.55 16 3 C 0.13 2.40 0.37 -12.65 0.00 2.39 16 4 C 0.07 1.68 4.60 86.38 0.40 2.07 16 5 N -1.11 -32.19 4.90 -187.49 -0.92 -33.11 16 6 S 2.63 104.95 5.13 -56.49 -0.29 104.66 16 7 O -0.99 -42.55 17.43 -127.65 -2.23 -44.78 16 8 O -1.00 -49.03 17.60 -127.65 -2.25 -51.27 16 9 C -0.55 -22.14 5.94 71.98 0.43 -21.71 16 10 C 0.01 0.25 1.47 -52.93 -0.08 0.18 16 11 C -0.53 -29.92 7.95 25.60 0.20 -29.71 16 12 H 0.05 2.72 7.82 -2.91 -0.02 2.69 16 13 C 0.04 2.37 5.43 84.65 0.46 2.82 16 14 N -0.89 -49.26 12.64 21.45 0.27 -48.99 16 15 Si 0.93 44.97 29.54 68.60 2.03 47.00 16 16 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 19 C -0.19 -8.27 9.95 30.62 0.30 -7.97 16 20 C -0.13 -5.81 9.14 30.62 0.28 -5.53 16 21 C -0.11 -2.19 4.83 30.22 0.15 -2.04 16 22 C -0.12 -2.21 5.25 30.16 0.16 -2.06 16 23 C -0.11 -1.65 5.85 31.31 0.18 -1.47 16 24 C -0.12 -1.51 5.31 30.14 0.16 -1.35 16 25 C -0.11 -1.35 5.34 30.20 0.16 -1.19 16 26 C -0.15 -2.14 3.46 28.74 0.10 -2.04 16 27 H 0.04 0.75 6.30 -2.39 -0.02 0.73 16 28 H 0.06 0.76 6.50 -2.38 -0.02 0.74 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.53 6.57 -2.39 -0.02 1.51 16 31 H 0.09 2.01 7.59 -2.39 -0.02 1.99 16 32 H 0.42 11.75 8.04 -96.74 -0.78 10.97 16 33 H 0.12 5.06 8.14 -2.39 -0.02 5.04 16 34 H 0.14 4.22 8.11 -2.39 -0.02 4.20 16 35 H 0.27 13.90 8.32 -92.71 -0.77 13.13 16 36 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.08 1.57 6.97 -2.39 -0.02 1.55 16 41 H 0.05 1.37 7.15 -2.38 -0.02 1.36 16 42 H 0.08 1.53 5.46 -2.39 -0.01 1.52 16 43 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.78 6.62 -2.39 -0.02 0.76 16 48 H 0.07 1.00 6.24 -2.39 -0.01 0.98 16 49 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.08 0.96 6.40 -2.39 -0.02 0.95 16 51 H 0.08 1.08 7.46 -2.39 -0.02 1.06 16 Total: -1.00 -69.62 395.28 -0.21 -69.83 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.14 Total: 31.47 kcal Atomic # 6 Polarization: -70.30 SS G_CDS: 4.03 Total: -66.27 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -0.65 Total: -82.10 kcal Atomic # 8 Polarization: -99.12 SS G_CDS: -5.47 Total: -104.60 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 104.95 SS G_CDS: -0.29 Total: 104.66 kcal Total: -69.62 -0.21 -69.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908364281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.873 kcal (2) G-P(sol) polarization free energy of solvation -69.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds