Wall clock time and date at job start Sat Apr 11 2020 07:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99556 * 2 1 4 4 C 1.34776 * 120.00539 * 180.02562 * 2 1 3 5 5 O 1.21591 * 119.99727 * 5.64797 * 4 2 1 6 6 N 1.34769 * 120.00022 * 185.65136 * 4 2 1 7 7 C 1.46507 * 119.99796 * 185.57754 * 6 4 2 8 8 C 1.53033 * 109.46220 * 84.93130 * 7 6 4 9 9 C 1.53190 * 109.31542 * 181.38630 * 8 7 6 10 10 N 1.46929 * 108.77433 * 305.36490 * 9 8 7 11 11 C 1.34773 * 120.62960 * 233.58370 * 10 9 8 12 12 O 1.21605 * 120.00338 * 356.18347 * 11 10 9 13 13 C 1.47431 * 120.00012 * 176.17989 * 11 10 9 14 14 C 1.39223 * 120.28148 * 53.23042 * 13 11 10 15 15 C 1.38223 * 120.09505 * 179.97438 * 14 13 11 16 16 C 1.38827 * 120.67233 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.57314 * 359.97438 * 16 15 14 18 18 C 1.40703 * 119.87621 * 359.74491 * 17 16 15 19 19 C 1.40894 * 120.32396 * 180.25211 * 18 17 16 20 20 H 1.07999 * 119.99807 * 210.69849 * 19 18 17 21 21 C 1.40273 * 120.00018 * 30.69967 * 19 18 17 22 22 N 1.30629 * 120.00389 * 8.35989 * 21 19 18 23 23 Si 1.86807 * 119.99905 * 188.36464 * 21 19 18 24 24 H 1.48492 * 109.47315 * 59.99736 * 23 21 19 25 25 H 1.48499 * 109.47132 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46842 * 299.99674 * 23 21 19 27 27 C 1.46922 * 118.73658 * 53.61015 * 10 9 8 28 28 C 1.53041 * 109.46022 * 205.00165 * 7 6 4 29 29 H 1.09002 * 109.46699 * 269.99721 * 1 2 3 30 30 H 1.08996 * 109.47338 * 30.00189 * 1 2 3 31 31 H 1.09002 * 109.46605 * 150.00027 * 1 2 3 32 32 H 1.09008 * 109.46899 * 175.30576 * 3 2 1 33 33 H 1.09003 * 109.47366 * 295.29993 * 3 2 1 34 34 H 1.08999 * 109.47531 * 55.30716 * 3 2 1 35 35 H 0.97003 * 120.00636 * 5.57960 * 6 4 2 36 36 H 1.09002 * 109.45022 * 324.96357 * 7 6 4 37 37 H 1.09001 * 109.49801 * 61.43135 * 8 7 6 38 38 H 1.09001 * 109.50020 * 301.34298 * 8 7 6 39 39 H 1.09006 * 109.58846 * 185.57681 * 9 8 7 40 40 H 1.08997 * 109.58491 * 65.15169 * 9 8 7 41 41 H 1.08002 * 119.95594 * 0.02562 * 14 13 11 42 42 H 1.07998 * 119.66313 * 180.02562 * 15 14 13 43 43 H 1.08000 * 119.71191 * 179.97438 * 16 15 14 44 44 H 1.08002 * 120.05724 * 179.97438 * 17 16 15 45 45 H 0.96998 * 120.00119 * 180.02562 * 22 21 19 46 46 H 1.08992 * 109.59079 * 66.17813 * 27 10 9 47 47 H 1.09006 * 109.58746 * 186.46168 * 27 10 9 48 48 H 1.08998 * 109.49716 * 58.65794 * 28 7 6 49 49 H 1.09000 * 109.52209 * 298.57815 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5355 -2.2176 -0.1046 6 7 3.4818 -1.1699 0.1144 7 6 4.2249 -2.4265 -0.0086 8 6 4.4959 -2.7161 -1.4866 9 6 5.2425 -4.0477 -1.6135 10 7 6.4498 -3.9944 -0.7779 11 6 7.6605 -4.2697 -1.3021 12 8 7.7539 -4.6330 -2.4589 13 6 8.8717 -4.1304 -0.4733 14 6 8.9565 -4.7720 0.7594 15 6 10.0942 -4.6392 1.5331 16 6 11.1624 -3.8681 1.0953 17 6 11.1081 -3.2219 -0.1183 18 6 9.9638 -3.3457 -0.9277 19 6 9.9003 -2.6924 -2.1744 20 1 8.9488 -2.3584 -2.5611 21 6 11.0728 -2.4759 -2.9133 22 7 12.1968 -3.0195 -2.5292 23 14 11.0270 -1.4100 -4.4468 24 1 10.5726 -0.0430 -4.0860 25 1 12.3858 -1.3397 -5.0415 26 1 10.0858 -2.0005 -5.4321 27 6 6.3121 -3.6358 0.6403 28 6 5.5535 -2.3087 0.7418 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3632 -0.8900 -0.5139 32 1 3.2662 1.0714 0.0841 33 1 1.9987 1.8031 -0.9291 34 1 1.8726 1.8759 0.8449 35 1 3.9563 -0.3399 0.2786 36 1 3.6373 -3.2390 0.4188 37 1 5.1044 -1.9161 -1.9085 38 1 3.5500 -2.7766 -2.0249 39 1 5.5249 -4.2106 -2.6537 40 1 4.5998 -4.8606 -1.2756 41 1 8.1326 -5.3752 1.1112 42 1 10.1527 -5.1403 2.4880 43 1 12.0436 -3.7746 1.7126 44 1 11.9437 -2.6238 -0.4506 45 1 13.0076 -2.8694 -3.0400 46 1 5.7567 -4.4150 1.1620 47 1 7.3003 -3.5293 1.0879 48 1 5.3603 -2.0793 1.7898 49 1 6.1523 -1.5126 0.2995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908781048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:49 Heat of formation + Delta-G solvation = -30.011919 kcal Electronic energy + Delta-G solvation = -30852.357333 eV Core-core repulsion = 26779.520617 eV Total energy + Delta-G solvation = -4072.836716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.52514 -39.50533 -37.57062 -36.57607 -35.62354 -34.46483 -33.72597 -31.48352 -30.87389 -29.93594 -29.28812 -28.21333 -26.37810 -25.51843 -24.27362 -23.24465 -22.00569 -20.99588 -20.43961 -20.15831 -18.82496 -18.06533 -17.24396 -16.86086 -16.25020 -16.09979 -15.57647 -15.20792 -14.79773 -14.62685 -14.38629 -14.26226 -14.16957 -13.74092 -13.64874 -13.22484 -13.10609 -12.91945 -12.81818 -12.68915 -12.53998 -12.31985 -12.10348 -11.94423 -11.68124 -11.64112 -11.21486 -11.15897 -11.12861 -10.85898 -10.79685 -10.58388 -10.45136 -10.26522 -9.96224 -9.70793 -9.29918 -9.24899 -8.79789 -8.69076 -8.10279 -7.54019 -7.45663 -6.80821 -4.46789 2.44309 2.49256 2.78778 3.03807 3.04625 3.08447 3.19614 3.60333 3.64808 3.90604 3.92279 4.58254 4.68309 4.73274 4.88903 4.95066 4.97439 5.16531 5.24483 5.28821 5.31240 5.44677 5.49386 5.51519 5.54630 5.73205 5.76970 5.84053 5.99071 6.02369 6.09613 6.11373 6.16801 6.23619 6.32063 6.34886 6.45987 6.56158 6.68726 6.95241 7.06349 7.12499 7.20229 7.42028 7.63969 7.73989 7.84449 7.93579 8.08678 8.20226 8.42565 8.51518 8.75834 8.81897 9.20120 10.12253 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.003009 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.490148 B = 9302.473474 C =10299.607993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.642 5.642 3 C 0.081 3.919 4 C 0.705 3.295 5 O -0.588 6.588 6 N -0.741 5.741 7 C 0.163 3.837 8 C -0.142 4.142 9 C 0.118 3.882 10 N -0.622 5.622 11 C 0.585 3.415 12 O -0.538 6.538 13 C -0.250 4.250 14 C -0.065 4.065 15 C -0.243 4.243 16 C -0.096 4.096 17 C -0.153 4.153 18 C 0.146 3.854 19 C -0.433 4.433 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.791 5.791 23 Si 0.913 3.087 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.262 1.262 27 C 0.109 3.891 28 C -0.141 4.141 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.283 0.717 46 H 0.061 0.939 47 H 0.110 0.890 48 H 0.077 0.923 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.004 9.173 6.772 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.381 5.381 3 C -0.063 4.063 4 C 0.407 3.593 5 O -0.466 6.466 6 N -0.397 5.397 7 C 0.058 3.942 8 C -0.181 4.181 9 C -0.006 4.006 10 N -0.358 5.358 11 C 0.378 3.622 12 O -0.414 6.414 13 C -0.254 4.254 14 C -0.084 4.084 15 C -0.263 4.263 16 C -0.115 4.115 17 C -0.172 4.172 18 C 0.142 3.858 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.143 4.143 22 N -0.416 5.416 23 Si 0.738 3.262 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.187 1.187 27 C -0.014 4.014 28 C -0.180 4.180 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.141 0.859 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.128 0.872 48 H 0.095 0.905 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.133 8.173 5.950 18.199 hybrid contribution 0.259 0.969 -0.559 1.149 sum -14.874 9.142 5.391 18.272 Atomic orbital electron populations 1.21474 0.77941 1.03080 1.01513 1.46925 1.07101 1.04931 1.79149 1.21735 0.96766 0.85671 1.02109 1.15882 0.81966 0.83757 0.77725 1.90915 1.67887 1.30163 1.57661 1.45501 1.05050 1.11507 1.77661 1.20893 0.91805 0.85681 0.95802 1.22318 1.00661 0.98743 0.96421 1.21371 0.85941 0.95737 0.97555 1.48181 1.06623 1.71046 1.09951 1.18552 0.82309 0.74768 0.86615 1.90683 1.86082 1.46261 1.18371 1.19426 0.97330 1.10661 0.98029 1.20593 0.96789 0.97840 0.93144 1.20286 0.96132 1.08982 1.00879 1.20811 0.96671 0.97589 0.96410 1.21403 0.99926 1.02859 0.93002 1.17368 0.89151 0.87525 0.91706 1.19522 0.94101 1.31043 1.01479 0.90479 1.25952 0.94634 0.94218 0.99480 1.69674 1.00513 1.33822 1.37638 0.86267 0.78335 0.80545 0.81099 1.18834 1.20184 1.18676 1.21797 1.02545 0.94313 0.82792 1.22225 0.95192 0.99950 1.00615 0.93162 0.91443 0.90351 0.90936 0.92038 0.91846 0.76849 0.89242 0.91331 0.90887 0.88933 0.92154 0.88879 0.89061 0.89115 0.85867 0.90574 0.92110 0.87207 0.90485 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 10.53 59.85 0.63 1.44 16 2 N -0.64 -6.09 3.27 -195.33 -0.64 -6.73 16 3 C 0.08 0.48 10.67 59.85 0.64 1.12 16 4 C 0.71 8.96 8.23 -86.93 -0.72 8.24 16 5 O -0.59 -9.74 15.52 5.29 0.08 -9.66 16 6 N -0.74 -8.09 4.96 -58.63 -0.29 -8.38 16 7 C 0.16 2.02 2.46 -67.89 -0.17 1.85 16 8 C -0.14 -1.96 5.65 -26.62 -0.15 -2.11 16 9 C 0.12 1.87 6.42 -3.71 -0.02 1.85 16 10 N -0.62 -11.13 2.97 -174.03 -0.52 -11.65 16 11 C 0.59 13.43 6.41 -12.52 -0.08 13.35 16 12 O -0.54 -14.31 15.56 5.27 0.08 -14.23 16 13 C -0.25 -5.92 4.96 -104.37 -0.52 -6.44 16 14 C -0.06 -1.36 7.39 -39.22 -0.29 -1.65 16 15 C -0.24 -5.02 10.03 -39.37 -0.39 -5.42 16 16 C -0.10 -2.11 10.01 -39.60 -0.40 -2.50 16 17 C -0.15 -3.77 8.64 -38.88 -0.34 -4.11 16 18 C 0.15 3.80 5.56 -106.54 -0.59 3.20 16 19 C -0.43 -11.53 7.93 -37.81 -0.30 -11.83 16 20 H 0.08 2.08 7.19 -52.49 -0.38 1.70 16 21 C 0.08 1.91 5.29 -17.30 -0.09 1.82 16 22 N -0.79 -20.28 10.85 55.56 0.60 -19.67 16 23 Si 0.91 19.15 29.57 -169.99 -5.03 14.12 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 26 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 27 C 0.11 1.58 5.48 -3.71 -0.02 1.56 16 28 C -0.14 -1.68 5.55 -26.61 -0.15 -1.83 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.08 0.75 7.35 -51.93 -0.38 0.37 16 32 H 0.07 0.38 5.49 -51.92 -0.29 0.10 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.39 3.37 6.05 -40.82 -0.25 3.12 16 36 H 0.09 1.23 7.50 -51.93 -0.39 0.84 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.65 7.03 -51.93 -0.36 1.28 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.70 7.29 -52.49 -0.38 1.32 16 42 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 44 H 0.12 3.13 6.28 -52.49 -0.33 2.80 16 45 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.11 1.75 4.69 -51.93 -0.24 1.51 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 389.87 15.07 5.88 5.88 Total: -1.00 -32.81 389.87 -9.99 -42.81 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.21 Total: 8.98 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.96 Total: -1.46 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.84 Total: -46.44 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.16 Total: -23.88 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.81 -9.99 -42.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908781048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.794 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds