Wall clock time and date at job start Sat Apr 11 2020 07:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99556 * 2 1 4 4 C 1.34776 * 120.00539 * 180.02562 * 2 1 3 5 5 O 1.21591 * 119.99727 * 5.64797 * 4 2 1 6 6 N 1.34769 * 120.00022 * 185.65136 * 4 2 1 7 7 C 1.46507 * 119.99796 * 185.57754 * 6 4 2 8 8 C 1.53033 * 109.46220 * 84.93130 * 7 6 4 9 9 C 1.53190 * 109.31542 * 181.38630 * 8 7 6 10 10 N 1.46929 * 108.77433 * 305.36490 * 9 8 7 11 11 C 1.34773 * 120.62960 * 233.58370 * 10 9 8 12 12 O 1.21605 * 120.00338 * 356.18347 * 11 10 9 13 13 C 1.47431 * 120.00012 * 176.17989 * 11 10 9 14 14 C 1.39223 * 120.28148 * 53.23042 * 13 11 10 15 15 C 1.38223 * 120.09505 * 179.97438 * 14 13 11 16 16 C 1.38827 * 120.67233 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.57314 * 359.97438 * 16 15 14 18 18 C 1.40703 * 119.87621 * 359.74491 * 17 16 15 19 19 C 1.40894 * 120.32396 * 180.25211 * 18 17 16 20 20 H 1.07999 * 119.99807 * 210.69849 * 19 18 17 21 21 C 1.40273 * 120.00018 * 30.69967 * 19 18 17 22 22 N 1.30629 * 120.00389 * 8.35989 * 21 19 18 23 23 Si 1.86807 * 119.99905 * 188.36464 * 21 19 18 24 24 H 1.48492 * 109.47315 * 59.99736 * 23 21 19 25 25 H 1.48499 * 109.47132 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46842 * 299.99674 * 23 21 19 27 27 C 1.46922 * 118.73658 * 53.61015 * 10 9 8 28 28 C 1.53041 * 109.46022 * 205.00165 * 7 6 4 29 29 H 1.09002 * 109.46699 * 269.99721 * 1 2 3 30 30 H 1.08996 * 109.47338 * 30.00189 * 1 2 3 31 31 H 1.09002 * 109.46605 * 150.00027 * 1 2 3 32 32 H 1.09008 * 109.46899 * 175.30576 * 3 2 1 33 33 H 1.09003 * 109.47366 * 295.29993 * 3 2 1 34 34 H 1.08999 * 109.47531 * 55.30716 * 3 2 1 35 35 H 0.97003 * 120.00636 * 5.57960 * 6 4 2 36 36 H 1.09002 * 109.45022 * 324.96357 * 7 6 4 37 37 H 1.09001 * 109.49801 * 61.43135 * 8 7 6 38 38 H 1.09001 * 109.50020 * 301.34298 * 8 7 6 39 39 H 1.09006 * 109.58846 * 185.57681 * 9 8 7 40 40 H 1.08997 * 109.58491 * 65.15169 * 9 8 7 41 41 H 1.08002 * 119.95594 * 0.02562 * 14 13 11 42 42 H 1.07998 * 119.66313 * 180.02562 * 15 14 13 43 43 H 1.08000 * 119.71191 * 179.97438 * 16 15 14 44 44 H 1.08002 * 120.05724 * 179.97438 * 17 16 15 45 45 H 0.96998 * 120.00119 * 180.02562 * 22 21 19 46 46 H 1.08992 * 109.59079 * 66.17813 * 27 10 9 47 47 H 1.09006 * 109.58746 * 186.46168 * 27 10 9 48 48 H 1.08998 * 109.49716 * 58.65794 * 28 7 6 49 49 H 1.09000 * 109.52209 * 298.57815 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5355 -2.2176 -0.1046 6 7 3.4818 -1.1699 0.1144 7 6 4.2249 -2.4265 -0.0086 8 6 4.4959 -2.7161 -1.4866 9 6 5.2425 -4.0477 -1.6135 10 7 6.4498 -3.9944 -0.7779 11 6 7.6605 -4.2697 -1.3021 12 8 7.7539 -4.6330 -2.4589 13 6 8.8717 -4.1304 -0.4733 14 6 8.9565 -4.7720 0.7594 15 6 10.0942 -4.6392 1.5331 16 6 11.1624 -3.8681 1.0953 17 6 11.1081 -3.2219 -0.1183 18 6 9.9638 -3.3457 -0.9277 19 6 9.9003 -2.6924 -2.1744 20 1 8.9488 -2.3584 -2.5611 21 6 11.0728 -2.4759 -2.9133 22 7 12.1968 -3.0195 -2.5292 23 14 11.0270 -1.4100 -4.4468 24 1 10.5726 -0.0430 -4.0860 25 1 12.3858 -1.3397 -5.0415 26 1 10.0858 -2.0005 -5.4321 27 6 6.3121 -3.6358 0.6403 28 6 5.5535 -2.3087 0.7418 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3632 -0.8900 -0.5139 32 1 3.2662 1.0714 0.0841 33 1 1.9987 1.8031 -0.9291 34 1 1.8726 1.8759 0.8449 35 1 3.9563 -0.3399 0.2786 36 1 3.6373 -3.2390 0.4188 37 1 5.1044 -1.9161 -1.9085 38 1 3.5500 -2.7766 -2.0249 39 1 5.5249 -4.2106 -2.6537 40 1 4.5998 -4.8606 -1.2756 41 1 8.1326 -5.3752 1.1112 42 1 10.1527 -5.1403 2.4880 43 1 12.0436 -3.7746 1.7126 44 1 11.9437 -2.6238 -0.4506 45 1 13.0076 -2.8694 -3.0400 46 1 5.7567 -4.4150 1.1620 47 1 7.3003 -3.5293 1.0879 48 1 5.3603 -2.0793 1.7898 49 1 6.1523 -1.5126 0.2995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908781048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:47 Heat of formation + Delta-G solvation = -50.567764 kcal Electronic energy + Delta-G solvation = -30853.248701 eV Core-core repulsion = 26779.520617 eV Total energy + Delta-G solvation = -4073.728084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.59022 -40.94298 -39.06133 -38.18238 -36.50023 -35.81111 -35.45536 -32.86311 -32.03349 -31.72713 -30.91663 -28.82140 -27.51085 -27.05571 -25.55212 -24.47880 -23.50793 -22.75209 -21.74861 -21.10570 -20.22794 -19.20125 -18.89990 -18.11861 -17.53427 -17.25767 -16.95777 -16.79021 -16.18444 -16.03149 -15.64721 -15.36411 -15.30806 -15.09117 -14.90481 -14.48707 -14.44742 -14.22807 -14.11277 -13.73685 -13.50682 -13.43740 -13.37084 -13.27129 -13.10871 -12.97424 -12.82618 -12.68215 -12.60208 -12.25636 -12.21286 -11.97682 -11.78206 -11.69100 -11.47729 -11.30950 -11.12673 -10.50151 -10.23640 -9.63154 -9.51278 -9.29908 -9.26775 -8.65109 -6.40074 0.69144 1.03062 1.31663 1.42685 1.49228 1.63983 1.99912 2.08821 2.17755 2.27378 2.74041 2.92387 3.63888 3.67983 3.75083 4.02099 4.06828 4.18927 4.22576 4.30220 4.36411 4.38327 4.46716 4.52596 4.60111 4.64948 4.73332 4.76867 4.80679 4.83012 4.87268 4.89277 4.94854 5.00692 5.04489 5.09541 5.22981 5.25876 5.37526 5.46990 5.53025 5.59844 5.72845 5.87832 5.88200 6.02365 6.13140 6.29905 6.52190 6.67283 6.88375 6.91755 6.95882 7.47843 7.51315 8.29894 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.003009 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.490148 B = 9302.473474 C =10299.607993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.641 5.641 3 C 0.075 3.925 4 C 0.697 3.303 5 O -0.633 6.633 6 N -0.730 5.730 7 C 0.172 3.828 8 C -0.130 4.130 9 C 0.116 3.884 10 N -0.612 5.612 11 C 0.579 3.421 12 O -0.590 6.590 13 C -0.261 4.261 14 C -0.061 4.061 15 C -0.229 4.229 16 C -0.095 4.095 17 C -0.177 4.177 18 C 0.116 3.884 19 C -0.469 4.469 20 H 0.056 0.944 21 C 0.036 3.964 22 N -0.822 5.822 23 Si 0.974 3.026 24 H -0.252 1.252 25 H -0.259 1.259 26 H -0.277 1.277 27 C 0.102 3.898 28 C -0.129 4.129 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.289 0.711 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.093 10.261 9.227 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.379 5.379 3 C -0.067 4.067 4 C 0.399 3.601 5 O -0.515 6.515 6 N -0.388 5.388 7 C 0.067 3.933 8 C -0.170 4.170 9 C -0.007 4.007 10 N -0.345 5.345 11 C 0.371 3.629 12 O -0.471 6.471 13 C -0.266 4.266 14 C -0.079 4.079 15 C -0.248 4.248 16 C -0.113 4.113 17 C -0.197 4.197 18 C 0.112 3.888 19 C -0.499 4.499 20 H 0.074 0.926 21 C -0.179 4.179 22 N -0.448 5.448 23 Si 0.796 3.204 24 H -0.176 1.176 25 H -0.183 1.183 26 H -0.202 1.202 27 C -0.020 4.020 28 C -0.168 4.168 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.247 0.753 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.137 0.863 44 H 0.125 0.875 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.117 0.883 48 H 0.127 0.873 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.245 9.336 8.472 20.563 hybrid contribution 0.470 0.566 -1.143 1.360 sum -15.774 9.902 7.328 20.015 Atomic orbital electron populations 1.21600 0.77142 1.03390 1.02188 1.47081 1.07828 1.05122 1.77856 1.21976 0.96782 0.84264 1.03693 1.16119 0.82248 0.84120 0.77647 1.90882 1.68794 1.32066 1.59715 1.45288 1.04645 1.11575 1.77263 1.20672 0.92044 0.86326 0.94279 1.22188 0.99832 0.97058 0.97923 1.21463 0.85447 0.97727 0.96029 1.48143 1.05581 1.69194 1.11619 1.18609 0.83695 0.74658 0.85923 1.90645 1.87050 1.49002 1.20366 1.19685 0.97228 1.10476 0.99173 1.20923 0.98011 0.97069 0.91919 1.20764 0.94868 1.07264 1.01941 1.21160 0.98149 0.96530 0.95456 1.21352 0.99486 1.04390 0.94465 1.17695 0.90571 0.88485 0.92003 1.19534 0.93877 1.33624 1.02848 0.92581 1.26661 0.94078 0.95132 1.02053 1.69713 1.01017 1.35035 1.39082 0.85373 0.78675 0.79207 0.77190 1.17556 1.18291 1.20185 1.22064 1.02838 0.96616 0.80474 1.22123 0.94154 0.98145 1.02359 0.92311 0.88543 0.92617 0.90422 0.90879 0.89719 0.75266 0.89884 0.92377 0.91037 0.91540 0.90180 0.85694 0.85040 0.86318 0.87538 0.89977 0.89295 0.88256 0.87348 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.40 10.53 127.77 1.34 2.74 16 2 N -0.64 -10.88 3.27 -890.16 -2.91 -13.79 16 3 C 0.08 0.67 10.67 127.77 1.36 2.03 16 4 C 0.70 16.78 8.23 179.06 1.47 18.25 16 5 O -0.63 -20.69 15.52 -4.00 -0.06 -20.75 16 6 N -0.73 -14.60 4.96 -457.69 -2.27 -16.87 16 7 C 0.17 3.98 2.46 45.01 0.11 4.10 16 8 C -0.13 -3.58 5.65 30.67 0.17 -3.41 16 9 C 0.12 3.74 6.42 86.36 0.55 4.30 16 10 N -0.61 -21.79 2.97 -822.78 -2.45 -24.23 16 11 C 0.58 27.28 6.41 86.67 0.56 27.84 16 12 O -0.59 -33.09 15.56 -4.05 -0.06 -33.15 16 13 C -0.26 -12.50 4.96 -19.70 -0.10 -12.60 16 14 C -0.06 -2.41 7.39 22.50 0.17 -2.24 16 15 C -0.23 -8.70 10.03 22.41 0.22 -8.48 16 16 C -0.09 -3.98 10.01 22.26 0.22 -3.76 16 17 C -0.18 -8.94 8.64 22.72 0.20 -8.74 16 18 C 0.12 6.22 5.56 -21.11 -0.12 6.10 16 19 C -0.47 -26.43 7.93 23.42 0.19 -26.24 16 20 H 0.06 3.26 7.19 -2.91 -0.02 3.23 16 21 C 0.04 1.88 5.29 85.37 0.45 2.33 16 22 N -0.82 -43.78 10.85 21.88 0.24 -43.54 16 23 Si 0.97 40.78 29.57 68.60 2.03 42.80 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 25 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 C 0.10 2.74 5.48 86.36 0.47 3.21 16 28 C -0.13 -2.77 5.55 30.67 0.17 -2.60 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.77 8.07 -2.39 -0.02 0.75 16 31 H 0.05 1.05 7.35 -2.39 -0.02 1.03 16 32 H 0.08 0.60 5.49 -2.38 -0.01 0.59 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.41 5.97 6.05 -92.71 -0.56 5.41 16 36 H 0.08 2.12 7.50 -2.39 -0.02 2.10 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 2.50 7.03 -2.38 -0.02 2.48 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.13 4.12 7.29 -2.91 -0.02 4.10 16 42 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 43 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 44 H 0.11 5.63 6.28 -2.91 -0.02 5.61 16 45 H 0.29 13.94 8.29 -92.71 -0.77 13.18 16 46 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.10 2.93 4.69 -2.38 -0.01 2.92 16 48 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -76.49 389.87 2.38 -74.11 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.41 Total: 32.58 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 7.45 Total: 2.83 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -7.39 Total: -98.43 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -0.13 Total: -53.90 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -76.49 2.38 -74.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908781048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.544 kcal (2) G-P(sol) polarization free energy of solvation -76.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds