Wall clock time and date at job start Sat Apr 11 2020 07:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46504 * 119.99877 * 2 1 4 4 C 1.34774 * 120.00106 * 180.02562 * 2 1 3 5 5 O 1.21583 * 119.99576 * 354.98776 * 4 2 1 6 6 N 1.34769 * 120.00068 * 174.99484 * 4 2 1 7 7 C 1.46505 * 119.99947 * 184.99201 * 6 4 2 8 8 C 1.53043 * 109.46166 * 154.99823 * 7 6 4 9 9 C 1.53185 * 109.31098 * 181.38513 * 8 7 6 10 10 N 1.46926 * 108.77386 * 305.36061 * 9 8 7 11 11 C 1.34779 * 120.62763 * 233.58455 * 10 9 8 12 12 O 1.21584 * 120.00499 * 358.73762 * 11 10 9 13 13 C 1.47647 * 119.99900 * 179.00431 * 11 10 9 14 14 C 1.40015 * 119.88848 * 32.22715 * 13 11 10 15 15 C 1.36323 * 120.10090 * 179.71376 * 14 13 11 16 16 C 1.40885 * 119.89158 * 0.53382 * 15 14 13 17 17 C 1.41111 * 120.09912 * 179.71668 * 16 15 14 18 18 H 1.08001 * 119.99635 * 210.15232 * 17 16 15 19 19 C 1.40226 * 120.00310 * 30.16450 * 17 16 15 20 20 N 1.30640 * 119.99953 * 8.82990 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 188.84014 * 19 17 16 22 22 H 1.48501 * 109.47311 * 59.99206 * 21 19 17 23 23 H 1.48496 * 109.47249 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46839 * 299.99289 * 21 19 17 25 25 C 1.40881 * 119.79700 * 359.74219 * 16 15 14 26 26 C 1.36319 * 119.88772 * 359.97438 * 25 16 15 27 27 C 1.46924 * 118.74032 * 53.86634 * 10 9 8 28 28 C 1.53041 * 109.45657 * 275.06398 * 7 6 4 29 29 H 1.09000 * 109.47049 * 270.00080 * 1 2 3 30 30 H 1.08997 * 109.47091 * 29.99458 * 1 2 3 31 31 H 1.08994 * 109.47035 * 150.00006 * 1 2 3 32 32 H 1.09002 * 109.46882 * 185.82759 * 3 2 1 33 33 H 1.09003 * 109.47034 * 305.83233 * 3 2 1 34 34 H 1.09000 * 109.47129 * 65.82849 * 3 2 1 35 35 H 0.97003 * 120.00098 * 4.98619 * 6 4 2 36 36 H 1.08991 * 109.46039 * 35.01904 * 7 6 4 37 37 H 1.08998 * 109.49882 * 61.42910 * 8 7 6 38 38 H 1.09007 * 109.51928 * 301.35239 * 8 7 6 39 39 H 1.09003 * 109.58626 * 185.57347 * 9 8 7 40 40 H 1.08996 * 109.70674 * 65.21910 * 9 8 7 41 41 H 1.07998 * 119.95183 * 359.97438 * 14 13 11 42 42 H 1.08001 * 120.05455 * 180.27166 * 15 14 13 43 43 H 0.97006 * 120.00383 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.06005 * 179.97438 * 25 16 15 45 45 H 1.08001 * 119.94548 * 180.02562 * 26 25 16 46 46 H 1.08995 * 109.58881 * 65.92603 * 27 10 9 47 47 H 1.09003 * 109.58724 * 186.35405 * 27 10 9 48 48 H 1.09013 * 109.49643 * 298.56408 * 28 7 6 49 49 H 1.09000 * 109.49885 * 58.62930 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5345 -2.2181 0.0910 6 7 3.4828 -1.1693 -0.1023 7 6 4.2070 -2.4381 -0.2131 8 6 5.5456 -2.2014 -0.9162 9 6 6.2844 -3.5355 -1.0611 10 7 6.4010 -4.1579 0.2647 11 6 7.6018 -4.5464 0.7376 12 8 8.5987 -4.4041 0.0563 13 6 7.7059 -5.1504 2.0809 14 6 6.6516 -5.9239 2.5817 15 6 6.7456 -6.4884 3.8190 16 6 7.9010 -6.2831 4.5985 17 6 8.0003 -6.8604 5.8823 18 1 8.5771 -6.3693 6.6521 19 6 7.3504 -8.0719 6.1586 20 7 6.7991 -8.7531 5.1897 21 14 7.2728 -8.7115 7.9119 22 1 6.5693 -7.7234 8.7687 23 1 6.5360 -10.0006 7.9364 24 1 8.6510 -8.9189 8.4246 25 6 8.9567 -5.4993 4.0926 26 6 8.8561 -4.9436 2.8519 27 6 5.1829 -4.3544 1.0624 28 6 4.4570 -3.0061 1.1858 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 3.2646 1.0722 -0.1043 33 1 1.8582 1.8842 -0.8332 34 1 2.0148 1.7938 0.9376 35 1 3.9706 -0.3309 -0.1024 36 1 3.6131 -3.1458 -0.7913 37 1 6.1500 -1.5130 -0.3257 38 1 5.3680 -1.7747 -1.9035 39 1 7.2791 -3.3596 -1.4710 40 1 5.7264 -4.1943 -1.7263 41 1 5.7645 -6.0770 1.9852 42 1 5.9338 -7.0885 4.2028 43 1 6.3491 -9.5910 5.3808 44 1 9.8441 -5.3388 4.6867 45 1 9.6649 -4.3429 2.4630 46 1 4.5348 -5.0776 0.5676 47 1 5.4505 -4.7190 2.0542 48 1 5.0718 -2.3100 1.7566 49 1 3.5043 -3.1519 1.6949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908797836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:52 Heat of formation + Delta-G solvation = -15.732353 kcal Electronic energy + Delta-G solvation = -30230.139046 eV Core-core repulsion = 26157.921539 eV Total energy + Delta-G solvation = -4072.217508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.59651 -39.70017 -37.62593 -36.87868 -35.66693 -34.61061 -33.84979 -31.78320 -30.86805 -29.77330 -29.50901 -28.27035 -26.56838 -25.86821 -24.27514 -23.37208 -21.82080 -21.02042 -20.60073 -20.18565 -18.98457 -18.15069 -17.50526 -16.87908 -16.40239 -16.07338 -15.74728 -15.34016 -14.91495 -14.78798 -14.33157 -14.25880 -14.16025 -13.88581 -13.68362 -13.24841 -13.10432 -12.93180 -12.91349 -12.80928 -12.48894 -12.41923 -12.32389 -11.96006 -11.88450 -11.52315 -11.44327 -11.24272 -11.15977 -11.09905 -10.75321 -10.62221 -10.48503 -10.27430 -10.01599 -9.48190 -9.42712 -9.28072 -8.93257 -8.78210 -8.28196 -7.64305 -7.45668 -6.91667 -4.58791 2.26723 2.40713 2.96542 2.97399 2.98525 3.00482 3.01191 3.48332 3.59470 3.77305 3.81961 4.53248 4.59502 4.64135 4.84494 4.91236 4.92558 5.02650 5.18966 5.22350 5.29212 5.30610 5.42978 5.47707 5.52703 5.62884 5.67646 5.76501 5.90676 5.97418 6.02972 6.10720 6.13403 6.22875 6.27506 6.30125 6.41007 6.63917 6.77037 6.86986 6.93333 7.04907 7.14538 7.45413 7.60004 7.69604 7.79415 7.86994 8.04700 8.10441 8.39437 8.43075 8.67416 8.76298 8.96060 10.00274 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.002512 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.934067 B =11145.411213 C =12624.050707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.642 5.642 3 C 0.081 3.919 4 C 0.704 3.296 5 O -0.584 6.584 6 N -0.742 5.742 7 C 0.163 3.837 8 C -0.138 4.138 9 C 0.118 3.882 10 N -0.618 5.618 11 C 0.577 3.423 12 O -0.570 6.570 13 C -0.271 4.271 14 C -0.085 4.085 15 C -0.167 4.167 16 C 0.127 3.873 17 C -0.449 4.449 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.785 5.785 21 Si 0.916 3.084 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.231 4.231 26 C -0.031 4.031 27 C 0.080 3.920 28 C -0.143 4.143 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.393 0.607 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.285 0.715 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.134 0.866 48 H 0.067 0.933 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 15.869 -8.547 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.381 5.381 3 C -0.062 4.062 4 C 0.405 3.595 5 O -0.462 6.462 6 N -0.398 5.398 7 C 0.058 3.942 8 C -0.177 4.177 9 C -0.006 4.006 10 N -0.351 5.351 11 C 0.372 3.628 12 O -0.451 6.451 13 C -0.275 4.275 14 C -0.104 4.104 15 C -0.186 4.186 16 C 0.124 3.876 17 C -0.478 4.478 18 H 0.100 0.900 19 C -0.147 4.147 20 N -0.409 5.409 21 Si 0.740 3.260 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.250 4.250 26 C -0.050 4.050 27 C -0.043 4.043 28 C -0.182 4.182 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.230 0.770 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.142 0.858 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.083 0.917 47 H 0.151 0.849 48 H 0.086 0.914 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.653 14.934 -8.914 20.395 hybrid contribution 0.067 0.195 0.718 0.747 sum -10.586 15.129 -8.196 20.202 Atomic orbital electron populations 1.21469 0.77815 1.02796 1.01754 1.46923 1.07122 1.04866 1.79164 1.21727 0.96626 0.85750 1.02131 1.15878 0.81964 0.83785 0.77826 1.90936 1.67886 1.30117 1.57223 1.45496 1.04972 1.09928 1.79449 1.20898 0.91756 0.84491 0.97008 1.22198 0.95496 0.99056 1.00986 1.21355 1.01662 0.92212 0.85369 1.47981 1.07541 1.62106 1.17515 1.18720 0.81359 0.76093 0.86601 1.90635 1.36247 1.58232 1.59971 1.18871 0.99647 1.13449 0.95575 1.20913 0.96054 0.96948 0.96467 1.21102 0.99126 1.03307 0.95106 1.17796 0.89554 0.87828 0.92429 1.19744 1.26305 1.04431 0.97274 0.90007 1.26040 0.92773 0.96541 0.99377 1.69689 1.25264 1.12497 1.33465 0.86229 0.79626 0.78476 0.81670 1.18652 1.20125 1.18802 1.20762 0.99313 1.08285 0.96647 1.20286 0.94540 0.96479 0.93686 1.22830 0.85447 0.96037 0.99991 1.22425 1.01260 0.97837 0.96711 0.93003 0.91466 0.90557 0.91106 0.91772 0.92107 0.76995 0.89433 0.91000 0.90582 0.88733 0.91934 0.87167 0.85818 0.90343 0.88365 0.88544 0.91739 0.84852 0.91397 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 10.44 59.85 0.63 1.42 16 2 N -0.64 -5.78 3.27 -195.34 -0.64 -6.42 16 3 C 0.08 0.42 10.67 59.85 0.64 1.06 16 4 C 0.70 8.65 8.22 -86.93 -0.71 7.93 16 5 O -0.58 -9.58 15.63 5.29 0.08 -9.49 16 6 N -0.74 -7.56 4.98 -58.64 -0.29 -7.85 16 7 C 0.16 1.90 2.38 -67.88 -0.16 1.74 16 8 C -0.14 -1.46 5.55 -26.61 -0.15 -1.61 16 9 C 0.12 1.59 6.43 -3.71 -0.02 1.57 16 10 N -0.62 -10.33 2.97 -173.69 -0.52 -10.85 16 11 C 0.58 12.14 7.44 -12.42 -0.09 12.05 16 12 O -0.57 -13.40 16.17 5.29 0.09 -13.32 16 13 C -0.27 -6.10 5.55 -104.73 -0.58 -6.68 16 14 C -0.09 -1.87 7.36 -39.61 -0.29 -2.16 16 15 C -0.17 -4.06 8.59 -39.27 -0.34 -4.40 16 16 C 0.13 3.22 5.54 -106.81 -0.59 2.62 16 17 C -0.45 -11.20 9.05 -37.75 -0.34 -11.54 16 18 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 19 C 0.07 1.71 5.28 -17.31 -0.09 1.61 16 20 N -0.78 -19.18 10.82 55.56 0.60 -18.58 16 21 Si 0.92 17.65 29.57 -169.99 -5.03 12.62 16 22 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 23 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 C -0.23 -5.52 9.73 -39.27 -0.38 -5.90 16 26 C -0.03 -0.71 9.53 -39.61 -0.38 -1.09 16 27 C 0.08 1.21 4.89 -3.49 -0.02 1.19 16 28 C -0.14 -1.92 5.67 -26.39 -0.15 -2.06 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 31 H 0.08 0.70 7.49 -51.93 -0.39 0.31 16 32 H 0.07 0.30 5.46 -51.93 -0.28 0.02 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.39 2.97 5.99 -40.82 -0.24 2.73 16 36 H 0.09 1.15 7.65 -51.93 -0.40 0.75 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 39 H 0.09 1.39 7.01 -51.93 -0.36 1.02 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.11 2.13 5.27 -52.49 -0.28 1.86 16 42 H 0.12 3.07 6.24 -52.49 -0.33 2.74 16 43 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 44 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 45 H 0.10 2.13 7.95 -52.49 -0.42 1.71 16 46 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 47 H 0.13 2.29 3.56 -53.98 -0.19 2.10 16 48 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 49 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -31.63 389.18 -9.96 -41.59 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.08 Total: 10.67 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.04 Total: -4.24 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.85 Total: -43.70 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.17 Total: -22.81 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.63 -9.96 -41.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908797836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.855 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds