Wall clock time and date at job start Sat Apr 11 2020 07:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46504 * 119.99877 * 2 1 4 4 C 1.34774 * 120.00106 * 180.02562 * 2 1 3 5 5 O 1.21583 * 119.99576 * 354.98776 * 4 2 1 6 6 N 1.34769 * 120.00068 * 174.99484 * 4 2 1 7 7 C 1.46505 * 119.99947 * 184.99201 * 6 4 2 8 8 C 1.53043 * 109.46166 * 154.99823 * 7 6 4 9 9 C 1.53185 * 109.31098 * 181.38513 * 8 7 6 10 10 N 1.46926 * 108.77386 * 305.36061 * 9 8 7 11 11 C 1.34779 * 120.62763 * 233.58455 * 10 9 8 12 12 O 1.21584 * 120.00499 * 358.73762 * 11 10 9 13 13 C 1.47647 * 119.99900 * 179.00431 * 11 10 9 14 14 C 1.40015 * 119.88848 * 32.22715 * 13 11 10 15 15 C 1.36323 * 120.10090 * 179.71376 * 14 13 11 16 16 C 1.40885 * 119.89158 * 0.53382 * 15 14 13 17 17 C 1.41111 * 120.09912 * 179.71668 * 16 15 14 18 18 H 1.08001 * 119.99635 * 210.15232 * 17 16 15 19 19 C 1.40226 * 120.00310 * 30.16450 * 17 16 15 20 20 N 1.30640 * 119.99953 * 8.82990 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 188.84014 * 19 17 16 22 22 H 1.48501 * 109.47311 * 59.99206 * 21 19 17 23 23 H 1.48496 * 109.47249 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46839 * 299.99289 * 21 19 17 25 25 C 1.40881 * 119.79700 * 359.74219 * 16 15 14 26 26 C 1.36319 * 119.88772 * 359.97438 * 25 16 15 27 27 C 1.46924 * 118.74032 * 53.86634 * 10 9 8 28 28 C 1.53041 * 109.45657 * 275.06398 * 7 6 4 29 29 H 1.09000 * 109.47049 * 270.00080 * 1 2 3 30 30 H 1.08997 * 109.47091 * 29.99458 * 1 2 3 31 31 H 1.08994 * 109.47035 * 150.00006 * 1 2 3 32 32 H 1.09002 * 109.46882 * 185.82759 * 3 2 1 33 33 H 1.09003 * 109.47034 * 305.83233 * 3 2 1 34 34 H 1.09000 * 109.47129 * 65.82849 * 3 2 1 35 35 H 0.97003 * 120.00098 * 4.98619 * 6 4 2 36 36 H 1.08991 * 109.46039 * 35.01904 * 7 6 4 37 37 H 1.08998 * 109.49882 * 61.42910 * 8 7 6 38 38 H 1.09007 * 109.51928 * 301.35239 * 8 7 6 39 39 H 1.09003 * 109.58626 * 185.57347 * 9 8 7 40 40 H 1.08996 * 109.70674 * 65.21910 * 9 8 7 41 41 H 1.07998 * 119.95183 * 359.97438 * 14 13 11 42 42 H 1.08001 * 120.05455 * 180.27166 * 15 14 13 43 43 H 0.97006 * 120.00383 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.06005 * 179.97438 * 25 16 15 45 45 H 1.08001 * 119.94548 * 180.02562 * 26 25 16 46 46 H 1.08995 * 109.58881 * 65.92603 * 27 10 9 47 47 H 1.09003 * 109.58724 * 186.35405 * 27 10 9 48 48 H 1.09013 * 109.49643 * 298.56408 * 28 7 6 49 49 H 1.09000 * 109.49885 * 58.62930 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5345 -2.2181 0.0910 6 7 3.4828 -1.1693 -0.1023 7 6 4.2070 -2.4381 -0.2131 8 6 5.5456 -2.2014 -0.9162 9 6 6.2844 -3.5355 -1.0611 10 7 6.4010 -4.1579 0.2647 11 6 7.6018 -4.5464 0.7376 12 8 8.5987 -4.4041 0.0563 13 6 7.7059 -5.1504 2.0809 14 6 6.6516 -5.9239 2.5817 15 6 6.7456 -6.4884 3.8190 16 6 7.9010 -6.2831 4.5985 17 6 8.0003 -6.8604 5.8823 18 1 8.5771 -6.3693 6.6521 19 6 7.3504 -8.0719 6.1586 20 7 6.7991 -8.7531 5.1897 21 14 7.2728 -8.7115 7.9119 22 1 6.5693 -7.7234 8.7687 23 1 6.5360 -10.0006 7.9364 24 1 8.6510 -8.9189 8.4246 25 6 8.9567 -5.4993 4.0926 26 6 8.8561 -4.9436 2.8519 27 6 5.1829 -4.3544 1.0624 28 6 4.4570 -3.0061 1.1858 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 3.2646 1.0722 -0.1043 33 1 1.8582 1.8842 -0.8332 34 1 2.0148 1.7938 0.9376 35 1 3.9706 -0.3309 -0.1024 36 1 3.6131 -3.1458 -0.7913 37 1 6.1500 -1.5130 -0.3257 38 1 5.3680 -1.7747 -1.9035 39 1 7.2791 -3.3596 -1.4710 40 1 5.7264 -4.1943 -1.7263 41 1 5.7645 -6.0770 1.9852 42 1 5.9338 -7.0885 4.2028 43 1 6.3491 -9.5910 5.3808 44 1 9.8441 -5.3388 4.6867 45 1 9.6649 -4.3429 2.4630 46 1 4.5348 -5.0776 0.5676 47 1 5.4505 -4.7190 2.0542 48 1 5.0718 -2.3100 1.7566 49 1 3.5043 -3.1519 1.6949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908797836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:51 Heat of formation + Delta-G solvation = -34.651377 kcal Electronic energy + Delta-G solvation = -30230.959437 eV Core-core repulsion = 26157.921539 eV Total energy + Delta-G solvation = -4073.037898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.66587 -41.02373 -39.16466 -38.37580 -36.49977 -35.87270 -35.55284 -33.09914 -32.03167 -31.43897 -31.24859 -28.84147 -27.91972 -27.03147 -25.48337 -24.59945 -23.34960 -22.74328 -21.88405 -21.10984 -20.34922 -19.32790 -19.01103 -18.13868 -17.61003 -17.32105 -16.91482 -16.85148 -16.26205 -15.96476 -15.57796 -15.40902 -15.33284 -15.02664 -15.01167 -14.54417 -14.42504 -14.32483 -14.05842 -13.86049 -13.62291 -13.41842 -13.36827 -13.30450 -13.11520 -12.97657 -12.81394 -12.72284 -12.46802 -12.39847 -12.21361 -11.98269 -11.76094 -11.66795 -11.31471 -11.24123 -11.17206 -10.63264 -10.22146 -9.71013 -9.54375 -9.43969 -9.28181 -8.69513 -6.47877 0.48777 1.10542 1.39860 1.44763 1.51966 1.64275 2.02231 2.09804 2.15063 2.19057 2.74732 2.93341 3.59898 3.62913 3.82297 3.95562 4.03430 4.11158 4.23096 4.27257 4.32042 4.36848 4.42722 4.45268 4.53776 4.60637 4.73074 4.76551 4.85120 4.86199 4.88723 4.91892 4.94945 4.96411 5.03146 5.06654 5.16259 5.21290 5.30590 5.48840 5.52549 5.59014 5.65468 5.80834 5.88245 5.96183 6.00746 6.24623 6.47198 6.56918 6.81402 6.89853 6.93218 7.33342 7.52847 8.24884 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.002512 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.934067 B =11145.411213 C =12624.050707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.641 5.641 3 C 0.075 3.925 4 C 0.695 3.305 5 O -0.633 6.633 6 N -0.729 5.729 7 C 0.171 3.829 8 C -0.123 4.123 9 C 0.111 3.889 10 N -0.607 5.607 11 C 0.575 3.425 12 O -0.599 6.599 13 C -0.277 4.277 14 C -0.073 4.073 15 C -0.187 4.187 16 C 0.100 3.900 17 C -0.481 4.481 18 H 0.084 0.916 19 C 0.034 3.966 20 N -0.815 5.815 21 Si 0.988 3.012 22 H -0.257 1.257 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.243 4.243 26 C -0.039 4.039 27 C 0.080 3.920 28 C -0.133 4.133 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.114 0.886 43 H 0.293 0.707 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.065 0.935 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 17.659 -9.281 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.378 5.378 3 C -0.067 4.067 4 C 0.396 3.604 5 O -0.514 6.514 6 N -0.387 5.387 7 C 0.065 3.935 8 C -0.162 4.162 9 C -0.011 4.011 10 N -0.339 5.339 11 C 0.369 3.631 12 O -0.483 6.483 13 C -0.281 4.281 14 C -0.092 4.092 15 C -0.206 4.206 16 C 0.097 3.903 17 C -0.509 4.509 18 H 0.102 0.898 19 C -0.183 4.183 20 N -0.439 5.439 21 Si 0.809 3.191 22 H -0.181 1.181 23 H -0.191 1.191 24 H -0.184 1.184 25 C -0.262 4.262 26 C -0.059 4.059 27 C -0.043 4.043 28 C -0.173 4.173 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.153 0.847 42 H 0.132 0.868 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.097 0.903 47 H 0.131 0.869 48 H 0.083 0.917 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.665 16.809 -9.675 22.632 hybrid contribution 0.309 -0.256 0.832 0.924 sum -11.356 16.552 -8.843 21.935 Atomic orbital electron populations 1.21581 0.77239 1.03417 1.01920 1.47073 1.07745 1.05170 1.77842 1.21990 0.96854 0.84185 1.03675 1.16147 0.82376 0.84097 0.77731 1.90902 1.68906 1.32188 1.59453 1.45259 1.04442 1.10083 1.78909 1.20701 0.92296 0.85011 0.95497 1.22080 0.94097 0.97333 1.02673 1.21636 1.01984 0.93946 0.83562 1.47966 1.06491 1.60797 1.18675 1.18484 0.82346 0.76332 0.85931 1.90617 1.37505 1.59612 1.60517 1.19171 0.99361 1.13121 0.96472 1.21131 0.96668 0.95528 0.95825 1.21091 0.98904 1.04399 0.96248 1.18141 0.90274 0.88608 0.93268 1.20011 1.27820 1.05588 0.97491 0.89802 1.26885 0.91794 0.96131 1.03496 1.69740 1.25660 1.13057 1.35492 0.85144 0.79719 0.78060 0.76215 1.18128 1.19144 1.18428 1.20908 0.99513 1.08588 0.97212 1.20461 0.95208 0.96583 0.93611 1.22785 0.85069 0.97636 0.98771 1.22296 1.00207 0.96727 0.98042 0.93109 0.88112 0.92628 0.90174 0.89574 0.91058 0.75178 0.90521 0.90710 0.87401 0.89651 0.90146 0.84721 0.86845 0.89600 0.87615 0.87788 0.90320 0.86942 0.91662 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.38 10.44 127.77 1.33 2.72 16 2 N -0.64 -10.19 3.27 -890.18 -2.91 -13.10 16 3 C 0.08 0.53 10.67 127.77 1.36 1.89 16 4 C 0.70 16.11 8.22 179.06 1.47 17.58 16 5 O -0.63 -20.66 15.63 -3.98 -0.06 -20.72 16 6 N -0.73 -13.21 4.98 -457.69 -2.28 -15.49 16 7 C 0.17 3.62 2.38 45.02 0.11 3.73 16 8 C -0.12 -2.22 5.55 30.67 0.17 -2.05 16 9 C 0.11 2.76 6.43 86.36 0.55 3.31 16 10 N -0.61 -19.61 2.97 -821.70 -2.44 -22.04 16 11 C 0.58 24.01 7.44 86.73 0.65 24.65 16 12 O -0.60 -28.04 16.17 -3.98 -0.06 -28.10 16 13 C -0.28 -12.59 5.55 -19.93 -0.11 -12.70 16 14 C -0.07 -3.27 7.36 22.25 0.16 -3.10 16 15 C -0.19 -9.38 8.59 22.47 0.19 -9.19 16 16 C 0.10 5.24 5.54 -21.28 -0.12 5.12 16 17 C -0.48 -24.65 9.05 23.46 0.21 -24.44 16 18 H 0.08 4.09 7.87 -2.91 -0.02 4.07 16 19 C 0.03 1.61 5.28 85.35 0.45 2.06 16 20 N -0.81 -40.52 10.82 21.87 0.24 -40.29 16 21 Si 0.99 36.12 29.57 68.60 2.03 38.15 16 22 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 23 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 24 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 25 C -0.24 -11.97 9.73 22.47 0.22 -11.75 16 26 C -0.04 -1.87 9.53 22.25 0.21 -1.65 16 27 C 0.08 2.36 4.89 86.51 0.42 2.78 16 28 C -0.13 -3.43 5.67 30.82 0.17 -3.26 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.67 8.07 -2.39 -0.02 0.65 16 31 H 0.05 1.00 7.49 -2.39 -0.02 0.98 16 32 H 0.08 0.40 5.46 -2.39 -0.01 0.38 16 33 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.41 4.87 5.99 -92.71 -0.56 4.31 16 36 H 0.08 1.87 7.65 -2.39 -0.02 1.85 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.09 2.35 7.01 -2.39 -0.02 2.33 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.14 5.22 5.27 -2.91 -0.02 5.20 16 42 H 0.11 5.85 6.24 -2.91 -0.02 5.83 16 43 H 0.29 13.15 8.29 -92.70 -0.77 12.38 16 44 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 45 H 0.10 4.67 7.95 -2.91 -0.02 4.64 16 46 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 47 H 0.11 3.85 3.56 -4.32 -0.02 3.83 16 48 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 49 H 0.07 1.94 8.08 -2.39 -0.02 1.93 16 Total: -1.00 -71.02 389.18 2.39 -68.63 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.42 Total: 37.27 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 7.47 Total: -4.31 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -7.40 Total: -90.93 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.13 Total: -48.82 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -71.02 2.39 -68.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908797836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.980 kcal (2) G-P(sol) polarization free energy of solvation -71.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds