Wall clock time and date at job start Sat Apr 11 2020 07:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35669 * 116.99969 * 2 1 4 4 C 1.38506 * 120.07661 * 359.72385 * 3 2 1 5 5 C 1.39402 * 119.93141 * 179.75006 * 4 3 2 6 6 C 1.43198 * 119.96288 * 180.25354 * 5 4 3 7 7 N 5.83732 * 81.17527 * 359.97438 * 2 1 3 8 8 C 1.39832 * 120.07717 * 0.50258 * 5 4 3 9 9 C 1.37553 * 120.14942 * 359.77274 * 8 5 4 10 10 C 1.39754 * 120.07276 * 359.97438 * 9 8 5 11 11 C 1.47614 * 120.03677 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00084 * 145.69487 * 11 10 9 13 13 N 1.34778 * 120.00162 * 325.68717 * 11 10 9 14 14 C 1.46496 * 120.00275 * 6.60669 * 13 11 10 15 15 C 1.50698 * 109.47248 * 104.37199 * 14 13 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99881 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99965 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99659 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47194 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46731 * 119.99975 * 19 17 15 22 22 H 1.48502 * 109.46778 * 239.99698 * 19 17 15 23 23 C 1.46499 * 119.99768 * 186.60137 * 13 11 10 24 24 C 1.53005 * 109.47212 * 90.00618 * 23 13 11 25 25 C 1.52996 * 109.47368 * 179.97438 * 24 23 13 26 26 N 1.46900 * 109.47233 * 179.97438 * 25 24 23 27 27 C 1.46902 * 110.99943 * 66.04399 * 26 25 24 28 28 C 1.46902 * 111.00099 * 190.00039 * 26 25 24 29 29 H 1.08993 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46990 * 60.00001 * 1 2 3 31 31 H 1.08999 * 109.46893 * 300.00271 * 1 2 3 32 32 H 1.07999 * 120.03448 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.92226 * 179.74471 * 8 5 4 34 34 H 1.08001 * 119.96278 * 179.97438 * 9 8 5 35 35 H 1.08994 * 109.47519 * 224.37993 * 14 13 11 36 36 H 1.09003 * 109.46630 * 344.37248 * 14 13 11 37 37 H 0.97003 * 119.99724 * 180.02562 * 18 17 15 38 38 H 1.09005 * 109.47027 * 210.00119 * 23 13 11 39 39 H 1.09001 * 109.47394 * 330.00313 * 23 13 11 40 40 H 1.09005 * 109.46717 * 299.99691 * 24 23 13 41 41 H 1.09001 * 109.47190 * 59.99570 * 24 23 13 42 42 H 1.09001 * 109.46832 * 300.00069 * 25 24 23 43 43 H 1.09001 * 109.47140 * 59.99755 * 25 24 23 44 44 H 1.08993 * 109.46909 * 60.00463 * 27 26 25 45 45 H 1.08999 * 109.46675 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.46999 * 300.00011 * 27 26 25 47 47 H 1.08997 * 109.46931 * 59.99941 * 28 26 25 48 48 H 1.08999 * 109.46930 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.46845 * 299.99765 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2922 2.3714 -0.0058 5 6 1.9282 3.6119 -0.0005 6 6 1.1505 4.8143 -0.0010 7 7 0.5336 5.7682 -0.0026 8 6 3.3247 3.6835 0.0000 9 6 4.0755 2.5310 0.0000 10 6 3.4444 1.2840 0.0001 11 6 4.2510 0.0477 -0.0005 12 8 3.8549 -0.9368 0.5929 13 7 5.4264 0.0101 -0.6590 14 6 5.9736 1.2332 -1.2512 15 6 7.1065 1.7415 -0.3973 16 1 7.3907 1.2068 0.4969 17 6 7.7802 2.8893 -0.7577 18 7 7.4337 3.5407 -1.8463 19 14 9.1849 3.5190 0.3005 20 1 9.3747 2.6129 1.4615 21 1 10.4316 3.5598 -0.5052 22 1 8.8646 4.8852 0.7865 23 6 6.1568 -1.2538 -0.7823 24 6 5.7130 -1.9772 -2.0554 25 6 6.4762 -3.2969 -2.1846 26 7 6.0497 -3.9917 -3.4066 27 6 6.4458 -3.2401 -4.6050 28 6 6.5789 -5.3615 -3.4453 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 0.2136 2.3170 -0.0107 33 1 3.8148 4.6458 0.0000 34 1 5.1539 2.5897 0.0000 35 1 6.3427 1.0177 -2.2539 36 1 5.1921 1.9910 -1.3069 37 1 7.9079 4.3480 -2.1000 38 1 7.2267 -1.0517 -0.8335 39 1 5.9465 -1.8810 0.0841 40 1 4.6431 -2.1793 -2.0042 41 1 5.9232 -1.3500 -2.9217 42 1 7.5460 -3.0943 -2.2359 43 1 6.2664 -3.9243 -1.3182 44 1 7.5302 -3.1327 -4.6245 45 1 6.1181 -3.7769 -5.4952 46 1 5.9832 -2.2533 -4.5844 47 1 6.2131 -5.9169 -2.5817 48 1 6.2477 -5.8532 -4.3600 49 1 7.6682 -5.3308 -3.4229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930705433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:22 Heat of formation + Delta-G solvation = 10.708622 kcal Electronic energy + Delta-G solvation = -30606.684412 eV Core-core repulsion = 26535.613472 eV Total energy + Delta-G solvation = -4071.070941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.48240 -38.79327 -37.69622 -37.49144 -36.08226 -35.23520 -33.14525 -32.06686 -30.81154 -30.08822 -27.64433 -27.51406 -27.31704 -26.23381 -24.36668 -23.15575 -22.31652 -21.93462 -20.62654 -19.38995 -18.95104 -16.93991 -16.66066 -16.50613 -16.07830 -15.68484 -15.52547 -15.40880 -14.94839 -14.79929 -14.65184 -14.17074 -13.99985 -13.93556 -13.81186 -13.74183 -13.49156 -12.88362 -12.67823 -12.44012 -12.41489 -12.36365 -12.15281 -12.01436 -11.78239 -11.68297 -11.55905 -11.36052 -11.26151 -11.12130 -11.06295 -11.00472 -10.91303 -10.39154 -10.18722 -10.05432 -9.80019 -9.14151 -8.87106 -8.44561 -8.32014 -8.12432 -7.72252 -6.33316 -4.42968 0.67906 1.57900 2.67050 2.84129 3.14023 3.24436 3.28017 3.36446 3.54260 3.73873 3.89860 4.08963 4.12547 4.25419 4.89493 4.98382 5.00942 5.10236 5.15361 5.17303 5.17929 5.26410 5.32445 5.40497 5.43671 5.49830 5.58625 5.67252 5.73610 5.74190 5.79905 5.84910 5.93102 6.03714 6.04163 6.16492 6.22108 6.42729 6.51021 6.58188 6.65079 6.73128 6.98937 7.06020 7.08778 7.13514 7.41742 7.47612 7.50626 7.62056 7.88166 8.29615 8.67115 8.96834 9.26450 10.71238 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006994 B = 0.004298 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4002.487176 B = 6513.340760 C = 9588.724423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.286 6.286 3 C 0.172 3.828 4 C -0.187 4.187 5 C 0.020 3.980 6 C 0.263 3.737 7 N -0.425 5.425 8 C -0.117 4.117 9 C -0.048 4.048 10 C -0.134 4.134 11 C 0.559 3.441 12 O -0.548 6.548 13 N -0.588 5.588 14 C 0.208 3.792 15 C -0.544 4.544 16 H 0.067 0.933 17 C 0.069 3.931 18 N -0.881 5.881 19 Si 0.894 3.106 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.280 1.280 23 C 0.124 3.876 24 C -0.129 4.129 25 C 0.059 3.941 26 N -0.548 5.548 27 C 0.021 3.979 28 C 0.025 3.975 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.202 0.798 35 H 0.032 0.968 36 H 0.067 0.933 37 H 0.268 0.732 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.025 0.975 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 -8.646 -1.482 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.198 6.198 3 C 0.124 3.876 4 C -0.209 4.209 5 C 0.016 3.984 6 C -0.052 4.052 7 N -0.100 5.100 8 C -0.138 4.138 9 C -0.066 4.066 10 C -0.138 4.138 11 C 0.347 3.653 12 O -0.428 6.428 13 N -0.318 5.318 14 C 0.088 3.912 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.136 4.136 18 N -0.518 5.518 19 Si 0.721 3.279 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.206 1.206 23 C 0.000 4.000 24 C -0.168 4.168 25 C -0.069 4.069 26 N -0.272 5.272 27 C -0.127 4.127 28 C -0.123 4.123 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.219 0.781 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.561 -7.760 -1.303 10.912 hybrid contribution 1.728 0.412 0.263 1.796 sum -5.832 -7.348 -1.041 9.439 Atomic orbital electron populations 1.23118 0.78991 1.04086 1.01105 1.86315 1.20582 1.25429 1.87432 1.18710 0.90832 0.84253 0.93756 1.20942 0.99920 0.90422 1.09598 1.15869 0.91968 0.86526 1.04031 1.25764 0.93025 0.92927 0.93466 1.81208 1.09260 1.10639 1.08940 1.21130 0.90673 1.00113 1.01852 1.22778 1.04876 0.89143 0.89776 1.19635 0.90375 0.95363 1.08439 1.17911 0.81177 0.86801 0.79371 1.90716 1.71381 1.36264 1.44437 1.47995 1.19656 1.10746 1.53373 1.20257 0.95097 0.81519 0.94304 1.21520 1.16532 1.09855 1.10350 0.91503 1.24975 0.97136 0.96377 0.95070 1.69934 1.40846 1.17849 1.23207 0.86485 0.81909 0.78970 0.80511 1.19457 1.20788 1.20600 1.21190 0.96615 0.85086 0.97061 1.21939 1.01097 0.94788 0.98935 1.22073 0.97183 0.95600 0.92059 1.61977 1.59963 1.02525 1.02765 1.22438 0.98408 0.99447 0.92406 1.22362 0.97280 0.90212 1.02469 0.88158 0.92726 0.92660 0.84598 0.84400 0.78127 0.94989 0.91625 0.92238 0.90173 0.90819 0.91143 0.91688 0.94652 0.90767 0.95662 0.91832 0.90717 0.91461 0.91681 0.95860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.29 -4.55 9.09 -36.93 -0.34 -4.89 16 3 C 0.17 2.78 6.66 -38.77 -0.26 2.52 16 4 C -0.19 -2.53 8.72 -39.05 -0.34 -2.87 16 5 C 0.02 0.28 5.73 -106.94 -0.61 -0.33 16 6 C 0.26 3.79 15.31 -22.47 -0.34 3.44 16 7 N -0.43 -6.72 18.54 41.84 0.78 -5.95 16 8 C -0.12 -1.80 9.72 -39.24 -0.38 -2.18 16 9 C -0.05 -0.86 7.38 -39.27 -0.29 -1.15 16 10 C -0.13 -2.46 5.52 -104.79 -0.58 -3.04 16 11 C 0.56 11.46 7.27 -12.43 -0.09 11.37 16 12 O -0.55 -12.26 15.44 -12.93 -0.20 -12.46 16 13 N -0.59 -11.70 2.49 -176.26 -0.44 -12.14 16 14 C 0.21 4.46 4.68 -5.20 -0.02 4.44 16 15 C -0.54 -12.64 7.51 -34.44 -0.26 -12.90 16 16 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 17 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.88 -21.82 13.29 55.43 0.74 -21.08 16 19 Si 0.89 18.87 29.54 -169.99 -5.02 13.84 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 C 0.12 2.19 5.41 -4.04 -0.02 2.17 16 24 C -0.13 -2.02 5.46 -26.73 -0.15 -2.17 16 25 C 0.06 0.79 4.96 -3.83 -0.02 0.78 16 26 N -0.55 -7.04 5.02 -251.26 -1.26 -8.30 16 27 C 0.02 0.25 9.32 60.07 0.56 0.81 16 28 C 0.03 0.26 9.57 60.07 0.57 0.83 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 31 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 32 H 0.14 1.45 6.29 -52.49 -0.33 1.12 16 33 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 34 H 0.20 4.05 3.90 -52.49 -0.20 3.85 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.42 3.80 -52.25 -0.20 1.22 16 37 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 38 H 0.08 1.41 7.91 -51.93 -0.41 1.00 16 39 H 0.07 1.31 7.34 -51.93 -0.38 0.93 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.05 6.55 -51.93 -0.34 0.71 16 42 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 43 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 44 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.07 0.94 6.47 -51.93 -0.34 0.61 16 47 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 48 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 49 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -27.87 406.24 -8.14 -36.01 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.18 Total: 4.34 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.34 Total: 4.49 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.19 Total: -47.47 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.54 Total: -17.34 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -27.87 -8.14 -36.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930705433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.719 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds