Wall clock time and date at job start Sat Apr 11 2020 07:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35669 * 116.99969 * 2 1 4 4 C 1.38506 * 120.07661 * 359.72385 * 3 2 1 5 5 C 1.39402 * 119.93141 * 179.75006 * 4 3 2 6 6 C 1.43198 * 119.96288 * 180.25354 * 5 4 3 7 7 N 5.83732 * 81.17527 * 359.97438 * 2 1 3 8 8 C 1.39832 * 120.07717 * 0.50258 * 5 4 3 9 9 C 1.37553 * 120.14942 * 359.77274 * 8 5 4 10 10 C 1.39754 * 120.07276 * 359.97438 * 9 8 5 11 11 C 1.47614 * 120.03677 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00084 * 145.69487 * 11 10 9 13 13 N 1.34778 * 120.00162 * 325.68717 * 11 10 9 14 14 C 1.46496 * 120.00275 * 6.60669 * 13 11 10 15 15 C 1.50698 * 109.47248 * 104.37199 * 14 13 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99881 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99965 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99659 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47194 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46731 * 119.99975 * 19 17 15 22 22 H 1.48502 * 109.46778 * 239.99698 * 19 17 15 23 23 C 1.46499 * 119.99768 * 186.60137 * 13 11 10 24 24 C 1.53005 * 109.47212 * 90.00618 * 23 13 11 25 25 C 1.52996 * 109.47368 * 179.97438 * 24 23 13 26 26 N 1.46900 * 109.47233 * 179.97438 * 25 24 23 27 27 C 1.46902 * 110.99943 * 66.04399 * 26 25 24 28 28 C 1.46902 * 111.00099 * 190.00039 * 26 25 24 29 29 H 1.08993 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46990 * 60.00001 * 1 2 3 31 31 H 1.08999 * 109.46893 * 300.00271 * 1 2 3 32 32 H 1.07999 * 120.03448 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.92226 * 179.74471 * 8 5 4 34 34 H 1.08001 * 119.96278 * 179.97438 * 9 8 5 35 35 H 1.08994 * 109.47519 * 224.37993 * 14 13 11 36 36 H 1.09003 * 109.46630 * 344.37248 * 14 13 11 37 37 H 0.97003 * 119.99724 * 180.02562 * 18 17 15 38 38 H 1.09005 * 109.47027 * 210.00119 * 23 13 11 39 39 H 1.09001 * 109.47394 * 330.00313 * 23 13 11 40 40 H 1.09005 * 109.46717 * 299.99691 * 24 23 13 41 41 H 1.09001 * 109.47190 * 59.99570 * 24 23 13 42 42 H 1.09001 * 109.46832 * 300.00069 * 25 24 23 43 43 H 1.09001 * 109.47140 * 59.99755 * 25 24 23 44 44 H 1.08993 * 109.46909 * 60.00463 * 27 26 25 45 45 H 1.08999 * 109.46675 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.46999 * 300.00011 * 27 26 25 47 47 H 1.08997 * 109.46931 * 59.99941 * 28 26 25 48 48 H 1.08999 * 109.46930 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.46845 * 299.99765 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2922 2.3714 -0.0058 5 6 1.9282 3.6119 -0.0005 6 6 1.1505 4.8143 -0.0010 7 7 0.5336 5.7682 -0.0026 8 6 3.3247 3.6835 0.0000 9 6 4.0755 2.5310 0.0000 10 6 3.4444 1.2840 0.0001 11 6 4.2510 0.0477 -0.0005 12 8 3.8549 -0.9368 0.5929 13 7 5.4264 0.0101 -0.6590 14 6 5.9736 1.2332 -1.2512 15 6 7.1065 1.7415 -0.3973 16 1 7.3907 1.2068 0.4969 17 6 7.7802 2.8893 -0.7577 18 7 7.4337 3.5407 -1.8463 19 14 9.1849 3.5190 0.3005 20 1 9.3747 2.6129 1.4615 21 1 10.4316 3.5598 -0.5052 22 1 8.8646 4.8852 0.7865 23 6 6.1568 -1.2538 -0.7823 24 6 5.7130 -1.9772 -2.0554 25 6 6.4762 -3.2969 -2.1846 26 7 6.0497 -3.9917 -3.4066 27 6 6.4458 -3.2401 -4.6050 28 6 6.5789 -5.3615 -3.4453 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 0.2136 2.3170 -0.0107 33 1 3.8148 4.6458 0.0000 34 1 5.1539 2.5897 0.0000 35 1 6.3427 1.0177 -2.2539 36 1 5.1921 1.9910 -1.3069 37 1 7.9079 4.3480 -2.1000 38 1 7.2267 -1.0517 -0.8335 39 1 5.9465 -1.8810 0.0841 40 1 4.6431 -2.1793 -2.0042 41 1 5.9232 -1.3500 -2.9217 42 1 7.5460 -3.0943 -2.2359 43 1 6.2664 -3.9243 -1.3182 44 1 7.5302 -3.1327 -4.6245 45 1 6.1181 -3.7769 -5.4952 46 1 5.9832 -2.2533 -4.5844 47 1 6.2131 -5.9169 -2.5817 48 1 6.2477 -5.8532 -4.3600 49 1 7.6682 -5.3308 -3.4229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930705433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:21 Heat of formation + Delta-G solvation = -3.778723 kcal Electronic energy + Delta-G solvation = -30607.312631 eV Core-core repulsion = 26535.613472 eV Total energy + Delta-G solvation = -4071.699159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.80610 -40.19765 -38.87778 -38.58806 -37.37131 -36.79598 -34.79260 -33.52061 -32.09392 -31.30843 -29.26775 -28.47025 -28.26750 -27.50500 -25.69137 -24.78418 -23.59004 -23.15555 -21.77493 -20.67813 -20.35551 -18.57340 -18.24142 -17.75099 -17.46773 -16.84893 -16.63730 -16.50782 -16.37851 -16.12288 -15.99151 -15.46471 -15.31056 -15.23269 -15.01306 -14.92010 -14.71066 -14.34036 -14.17172 -13.75765 -13.72397 -13.40028 -13.26357 -13.17794 -13.06350 -13.01120 -12.71856 -12.66995 -12.56276 -12.38315 -12.34102 -12.30217 -12.10933 -12.01842 -11.69922 -11.54346 -11.42582 -10.75779 -10.56764 -9.89380 -9.46680 -9.29986 -9.24138 -8.16812 -6.31468 -0.58939 0.34769 1.44584 1.49233 1.50023 1.52985 1.59614 2.12236 2.29061 2.31372 2.47753 2.68748 2.83998 3.06614 3.12850 3.67213 3.82023 3.96907 4.04093 4.08886 4.17466 4.26222 4.39724 4.44133 4.45218 4.45983 4.49721 4.54768 4.66569 4.69377 4.76486 4.78148 4.83599 4.84600 4.92072 4.97843 5.02193 5.03883 5.18633 5.21241 5.26120 5.31441 5.35674 5.64636 5.72952 5.86182 6.06651 6.07423 6.14167 6.30453 6.37388 6.62781 6.85537 7.32558 7.44246 8.87314 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006994 B = 0.004298 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4002.487176 B = 6513.340760 C = 9588.724423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.172 3.828 4 C -0.165 4.165 5 C 0.034 3.966 6 C 0.283 3.717 7 N -0.442 5.442 8 C -0.115 4.115 9 C -0.058 4.058 10 C -0.160 4.160 11 C 0.555 3.445 12 O -0.574 6.574 13 N -0.591 5.591 14 C 0.221 3.779 15 C -0.546 4.546 16 H 0.055 0.945 17 C 0.036 3.964 18 N -0.906 5.906 19 Si 0.947 3.053 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.276 1.276 23 C 0.123 3.877 24 C -0.112 4.112 25 C 0.066 3.934 26 N -0.564 5.564 27 C 0.022 3.978 28 C 0.025 3.975 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.173 0.827 33 H 0.148 0.852 34 H 0.176 0.824 35 H 0.011 0.989 36 H 0.070 0.930 37 H 0.269 0.731 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.079 0.921 44 H 0.027 0.973 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 -8.690 -1.470 11.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.227 6.227 3 C 0.124 3.876 4 C -0.186 4.186 5 C 0.030 3.970 6 C -0.032 4.032 7 N -0.118 5.118 8 C -0.136 4.136 9 C -0.076 4.076 10 C -0.165 4.165 11 C 0.344 3.656 12 O -0.456 6.456 13 N -0.321 5.321 14 C 0.101 3.899 15 C -0.584 4.584 16 H 0.074 0.926 17 C -0.167 4.167 18 N -0.544 5.544 19 Si 0.773 3.227 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.201 1.201 23 C 0.000 4.000 24 C -0.151 4.151 25 C -0.062 4.062 26 N -0.289 5.289 27 C -0.126 4.126 28 C -0.123 4.123 29 H 0.133 0.867 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.190 0.810 33 H 0.166 0.834 34 H 0.193 0.807 35 H 0.029 0.971 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.046 0.954 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.833 -7.815 -1.297 11.865 hybrid contribution 2.010 0.373 0.263 2.061 sum -6.823 -7.442 -1.034 10.150 Atomic orbital electron populations 1.23509 0.76097 1.05883 1.02939 1.86286 1.23660 1.25503 1.87207 1.18725 0.90135 0.85350 0.93358 1.21217 1.01479 0.88944 1.06917 1.15777 0.91283 0.86806 1.03139 1.25513 0.92430 0.92442 0.92822 1.81248 1.09985 1.11063 1.09510 1.21142 0.91309 0.99634 1.01510 1.22375 1.03752 0.89912 0.91581 1.19601 0.91627 0.94435 1.10810 1.18302 0.81153 0.87413 0.78729 1.90677 1.71924 1.37424 1.45543 1.48047 1.19898 1.10950 1.53168 1.20013 0.94823 0.82154 0.92905 1.21574 1.16989 1.09846 1.09988 0.92626 1.25496 0.98796 0.96482 0.95876 1.70003 1.41818 1.18261 1.24314 0.85667 0.79532 0.78443 0.79046 1.19692 1.20844 1.20138 1.21276 0.96338 0.84493 0.97925 1.21733 1.00129 0.95828 0.97400 1.21954 0.96875 0.94414 0.92989 1.61964 1.60658 1.03703 1.02537 1.22439 0.98442 0.98947 0.92780 1.22423 0.97635 0.88693 1.03516 0.86676 0.90730 0.90778 0.80961 0.83421 0.80723 0.97091 0.91287 0.92119 0.90386 0.91154 0.92961 0.92529 0.94246 0.90221 0.95426 0.90067 0.92201 0.90950 0.90234 0.95280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.31 -9.63 9.09 -72.44 -0.66 -10.28 16 3 C 0.17 5.37 6.66 22.80 0.15 5.52 16 4 C -0.16 -3.99 8.72 22.61 0.20 -3.79 16 5 C 0.03 0.87 5.73 -21.37 -0.12 0.75 16 6 C 0.28 7.38 15.31 88.33 1.35 8.73 16 7 N -0.44 -12.92 18.54 19.00 0.35 -12.57 16 8 C -0.12 -3.45 9.72 22.49 0.22 -3.23 16 9 C -0.06 -2.11 7.38 22.47 0.17 -1.94 16 10 C -0.16 -5.97 5.52 -19.97 -0.11 -6.08 16 11 C 0.55 23.50 7.27 86.72 0.63 24.13 16 12 O -0.57 -26.41 15.44 13.44 0.21 -26.21 16 13 N -0.59 -24.60 2.49 -829.83 -2.07 -26.67 16 14 C 0.22 9.92 4.68 85.63 0.40 10.32 16 15 C -0.55 -26.09 7.51 25.60 0.19 -25.90 16 16 H 0.06 2.74 7.81 -2.91 -0.02 2.72 16 17 C 0.04 1.72 5.46 84.66 0.46 2.18 16 18 N -0.91 -45.44 13.29 21.45 0.28 -45.16 16 19 Si 0.95 38.94 29.54 68.60 2.03 40.97 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 23 C 0.12 4.53 5.41 86.38 0.47 4.99 16 24 C -0.11 -3.65 5.46 30.59 0.17 -3.48 16 25 C 0.07 1.78 4.96 86.30 0.43 2.21 16 26 N -0.56 -14.09 5.02 -948.85 -4.76 -18.85 16 27 C 0.02 0.51 9.32 127.69 1.19 1.70 16 28 C 0.03 0.48 9.57 127.69 1.22 1.70 16 29 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.03 7.65 -2.39 -0.02 1.01 16 31 H 0.07 1.04 7.67 -2.39 -0.02 1.03 16 32 H 0.17 2.90 6.29 -2.91 -0.02 2.88 16 33 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 34 H 0.18 7.32 3.90 -2.91 -0.01 7.31 16 35 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 3.11 3.80 -2.69 -0.01 3.10 16 37 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 38 H 0.08 2.86 7.91 -2.38 -0.02 2.84 16 39 H 0.07 2.62 7.34 -2.39 -0.02 2.60 16 40 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.06 1.92 6.55 -2.39 -0.02 1.91 16 42 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 43 H 0.08 2.04 8.06 -2.39 -0.02 2.03 16 44 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 1.55 8.12 -2.39 -0.02 1.54 16 46 H 0.06 1.54 6.47 -2.38 -0.02 1.52 16 47 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 48 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 49 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -60.62 406.24 4.47 -56.15 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.97 Total: 23.53 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 8.13 Total: 19.09 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -6.19 Total: -103.25 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.45 Total: -36.49 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -60.62 4.47 -56.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930705433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.367 kcal (2) G-P(sol) polarization free energy of solvation -60.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds