Wall clock time and date at job start Sat Apr 11 2020 07:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99865 * 2 1 4 4 C 1.46899 * 111.00354 * 123.95776 * 2 1 3 5 5 C 1.52999 * 109.47077 * 76.23261 * 4 2 1 6 6 O 1.42898 * 109.47262 * 64.43094 * 5 4 2 7 7 C 1.35902 * 116.99803 * 180.02562 * 6 5 4 8 8 C 1.38736 * 120.05728 * 359.72103 * 7 6 5 9 9 C 1.38142 * 119.94326 * 179.70381 * 8 7 6 10 10 C 1.38264 * 120.05604 * 0.59811 * 9 8 7 11 11 C 1.50703 * 119.94564 * 179.70437 * 10 9 8 12 12 C 1.52998 * 109.46849 * 269.97830 * 11 10 9 13 13 C 1.50703 * 109.47227 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99591 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99875 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99543 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00393 * 29.07648 * 16 15 13 18 18 C 1.38952 * 120.00058 * 209.07537 * 16 15 13 19 19 N 1.31415 * 119.99615 * 354.72910 * 18 16 15 20 20 Si 1.86796 * 120.00255 * 174.72895 * 18 16 15 21 21 H 1.48499 * 109.47409 * 60.00003 * 20 18 16 22 22 H 1.48503 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47241 * 299.99864 * 20 18 16 24 24 C 1.46494 * 120.00182 * 0.02562 * 15 13 12 25 25 C 1.47198 * 109.47151 * 84.47978 * 24 15 13 26 26 N 8.91660 * 157.67074 * 207.52169 * 5 1 2 27 27 C 1.38268 * 120.11355 * 359.67673 * 10 9 8 28 28 C 1.38150 * 120.05087 * 0.02769 * 27 10 9 29 29 H 1.09002 * 109.46907 * 296.03573 * 1 2 3 30 30 H 1.08997 * 109.47365 * 56.04435 * 1 2 3 31 31 H 1.09005 * 109.46570 * 176.04436 * 1 2 3 32 32 H 1.08992 * 109.47268 * 188.80031 * 3 2 1 33 33 H 1.08999 * 109.47262 * 308.80420 * 3 2 1 34 34 H 1.09005 * 109.46600 * 68.80075 * 3 2 1 35 35 H 1.08999 * 109.46565 * 316.23002 * 4 2 1 36 36 H 1.09000 * 109.46984 * 196.22830 * 4 2 1 37 37 H 1.09000 * 109.46928 * 304.42813 * 5 4 2 38 38 H 1.08996 * 109.46946 * 184.43723 * 5 4 2 39 39 H 1.08001 * 120.02436 * 359.97438 * 8 7 6 40 40 H 1.08000 * 119.97057 * 180.27906 * 9 8 7 41 41 H 1.08992 * 109.47032 * 29.97389 * 11 10 9 42 42 H 1.09005 * 109.47401 * 149.97793 * 11 10 9 43 43 H 1.09005 * 109.47064 * 299.99913 * 12 11 10 44 44 H 1.08996 * 109.47379 * 59.99886 * 12 11 10 45 45 H 0.96997 * 119.99750 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.46926 * 204.47558 * 24 15 13 47 47 H 1.09000 * 109.47481 * 324.47404 * 24 15 13 48 48 H 1.07994 * 119.97882 * 179.97438 * 27 10 9 49 49 H 1.08000 * 120.02342 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8579 -2.2628 0.8519 6 8 2.6774 -2.6119 -0.2655 7 6 2.6697 -3.9144 -0.6532 8 6 1.8938 -4.8386 0.0313 9 6 1.8830 -6.1608 -0.3686 10 6 2.6540 -6.5658 -1.4424 11 6 2.6455 -8.0102 -1.8725 12 6 3.7430 -8.7710 -1.1258 13 6 3.7349 -10.2153 -1.5563 14 8 2.9307 -10.5981 -2.3796 15 7 4.6219 -11.0811 -1.0271 16 6 4.6141 -12.3951 -1.4183 17 1 4.2809 -12.6611 -2.4106 18 6 5.0349 -13.3845 -0.5382 19 7 5.5373 -13.0541 0.6303 20 14 4.8866 -15.1843 -1.0159 21 1 5.6798 -15.4370 -2.2456 22 1 5.4017 -16.0335 0.0880 23 1 3.4609 -15.5131 -1.2701 24 6 5.5935 -10.6185 -0.0331 25 6 4.9755 -10.6370 1.3028 26 7 4.5011 -10.6483 2.3360 27 6 3.4326 -5.6478 -2.1229 28 6 3.4421 -4.3232 -1.7306 29 1 -0.3633 0.4511 0.9234 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0737 1.3468 -0.1572 33 1 1.5244 1.9415 -0.8008 34 1 1.7786 1.8438 0.9582 35 1 1.4329 -0.5144 2.0365 36 1 3.0469 -0.5197 1.2859 37 1 0.8172 -2.4953 0.6259 38 1 2.1752 -2.8303 1.7267 39 1 1.2955 -4.5237 0.8735 40 1 1.2757 -6.8798 0.1612 41 1 1.6761 -8.4520 -1.6422 42 1 2.8269 -8.0709 -2.9456 43 1 4.7125 -8.3291 -1.3560 44 1 3.5616 -8.7103 -0.0528 45 1 5.8314 -13.7448 1.2446 46 1 6.4623 -11.2766 -0.0406 47 1 5.9052 -9.6024 -0.2751 48 1 4.0343 -5.9666 -2.9611 49 1 4.0507 -3.6066 -2.2621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931297907.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:25 Heat of formation + Delta-G solvation = -7.468130 kcal Electronic energy + Delta-G solvation = -28957.300508 eV Core-core repulsion = 24885.441364 eV Total energy + Delta-G solvation = -4071.859144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.21224 -38.94289 -38.22272 -37.10699 -35.75796 -34.31788 -33.12423 -31.77784 -31.13455 -30.47168 -28.63207 -28.00850 -27.33920 -25.32224 -24.82657 -23.38883 -22.74322 -21.41761 -20.63443 -18.97697 -18.28883 -17.79701 -16.65728 -16.59274 -16.28789 -16.16916 -15.54381 -15.17431 -14.96248 -14.94337 -14.62294 -14.32511 -14.16922 -14.07294 -13.38653 -13.25733 -13.12366 -12.93794 -12.87594 -12.77412 -12.61288 -12.42230 -12.12337 -12.10348 -11.83172 -11.65232 -11.54485 -11.43055 -11.31319 -11.15631 -11.01303 -10.82086 -10.73102 -10.53388 -10.49076 -10.40957 -10.27065 -9.12844 -8.93369 -8.77940 -8.60737 -7.96403 -7.94699 -6.44218 -4.07947 1.40973 1.50905 3.08825 3.15763 3.23476 3.25513 3.47923 3.62740 3.79935 3.86517 4.04852 4.16714 4.49079 4.59447 4.74874 4.77177 4.85707 4.89569 4.91717 4.96272 4.97342 5.04017 5.11653 5.18558 5.21360 5.30854 5.33156 5.42977 5.47296 5.47932 5.51110 5.57184 5.66204 5.73717 5.85173 5.99809 6.10531 6.25038 6.33016 6.37515 6.45064 6.53163 6.55620 6.57751 6.72581 6.85211 6.86815 7.44086 7.46109 8.00176 8.32483 8.80985 9.03419 9.21062 9.77173 10.59977 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025954 B = 0.001803 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.566635 B =15522.748577 C =16026.277465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.054 3.946 5 C 0.066 3.934 6 O -0.301 6.301 7 C 0.120 3.880 8 C -0.209 4.209 9 C -0.076 4.076 10 C -0.111 4.111 11 C -0.058 4.058 12 C -0.130 4.130 13 C 0.462 3.538 14 O -0.572 6.572 15 N -0.450 5.450 16 C -0.306 4.306 17 H 0.102 0.898 18 C 0.034 3.966 19 N -0.891 5.891 20 Si 0.932 3.068 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.222 3.778 25 C 0.253 3.747 26 N -0.485 5.485 27 C -0.077 4.077 28 C -0.150 4.150 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.273 0.727 46 H 0.136 0.864 47 H 0.077 0.923 48 H 0.130 0.870 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 24.874 -0.134 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.074 4.074 5 C -0.010 4.010 6 O -0.214 6.214 7 C 0.075 3.925 8 C -0.228 4.228 9 C -0.095 4.095 10 C -0.111 4.111 11 C -0.096 4.096 12 C -0.171 4.171 13 C 0.251 3.749 14 O -0.454 6.454 15 N -0.171 5.171 16 C -0.434 4.434 17 H 0.120 0.880 18 C -0.169 4.169 19 N -0.531 5.531 20 Si 0.759 3.241 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.199 1.199 24 C 0.094 3.906 25 C -0.065 4.065 26 N -0.166 5.166 27 C -0.095 4.095 28 C -0.169 4.169 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.154 0.846 47 H 0.095 0.905 48 H 0.147 0.853 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.174 24.477 0.620 24.838 hybrid contribution -0.260 -0.753 0.708 1.066 sum -4.434 23.723 1.328 24.171 Atomic orbital electron populations 1.22480 0.87305 1.02460 1.00529 1.61904 1.07874 1.13905 1.42802 1.22397 1.01205 0.88465 1.00198 1.22204 1.01592 0.91901 0.91680 1.22763 0.94765 0.95271 0.88207 1.86129 1.64242 1.23054 1.48008 1.18998 0.95875 0.82966 0.94635 1.21171 1.04277 0.94333 1.02989 1.20896 0.97862 0.94925 0.95774 1.19965 0.98164 0.96288 0.96696 1.20244 0.99623 0.89042 1.00643 1.21622 1.00107 0.94107 1.01248 1.20314 0.81811 0.87515 0.85248 1.90541 1.39441 1.79521 1.35909 1.43552 1.28262 1.09134 1.36152 1.19599 1.43597 0.80308 0.99878 0.88019 1.25401 0.96115 1.00718 0.94627 1.69639 1.40846 1.34366 1.08290 0.85901 0.78969 0.81377 0.77901 1.19736 1.21007 1.19874 1.18823 0.93615 0.99596 0.78546 1.29403 0.92897 0.89451 0.94710 1.80930 1.09397 1.13052 1.13212 1.20912 0.97713 0.91702 0.99165 1.20375 1.02324 0.96451 0.97730 0.95648 0.91142 0.91279 0.91079 0.91288 0.95744 0.92428 0.89611 0.92119 0.91713 0.86046 0.85889 0.90616 0.90349 0.89880 0.90324 0.91576 0.84644 0.90523 0.85255 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.39 60.07 0.56 0.70 16 2 N -0.54 -4.29 4.88 -251.26 -1.23 -5.51 16 3 C 0.03 0.16 9.52 60.07 0.57 0.73 16 4 C 0.05 0.39 5.39 -3.82 -0.02 0.36 16 5 C 0.07 0.56 4.93 37.16 0.18 0.74 16 6 O -0.30 -3.51 10.08 -19.43 -0.20 -3.71 16 7 C 0.12 1.50 6.69 -39.22 -0.26 1.24 16 8 C -0.21 -2.52 9.04 -39.43 -0.36 -2.88 16 9 C -0.08 -1.01 9.69 -39.61 -0.38 -1.39 16 10 C -0.11 -1.52 5.13 -104.60 -0.54 -2.05 16 11 C -0.06 -0.90 4.63 -27.88 -0.13 -1.03 16 12 C -0.13 -2.21 4.28 -27.88 -0.12 -2.33 16 13 C 0.46 10.29 7.57 -10.98 -0.08 10.21 16 14 O -0.57 -14.64 15.75 5.55 0.09 -14.56 16 15 N -0.45 -10.45 2.60 -117.94 -0.31 -10.75 16 16 C -0.31 -7.87 9.16 -14.93 -0.14 -8.00 16 17 H 0.10 2.71 7.51 -52.49 -0.39 2.32 16 18 C 0.03 0.84 5.35 -17.47 -0.09 0.75 16 19 N -0.89 -22.45 8.79 55.50 0.49 -21.96 16 20 Si 0.93 20.22 29.56 -169.99 -5.02 15.20 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.22 4.42 4.91 -6.83 -0.03 4.39 16 25 C 0.25 5.64 12.85 -20.73 -0.27 5.38 16 26 N -0.49 -11.62 18.54 42.19 0.78 -10.84 16 27 C -0.08 -0.95 9.69 -39.60 -0.38 -1.34 16 28 C -0.15 -1.83 9.99 -39.43 -0.39 -2.23 16 29 H 0.02 0.14 8.08 -51.93 -0.42 -0.28 16 30 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 31 H 0.07 0.47 6.84 -51.93 -0.35 0.11 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 34 H 0.02 0.13 8.13 -51.93 -0.42 -0.29 16 35 H 0.06 0.32 7.95 -51.93 -0.41 -0.10 16 36 H 0.09 0.60 7.93 -51.93 -0.41 0.19 16 37 H 0.06 0.49 6.36 -51.93 -0.33 0.16 16 38 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 39 H 0.12 1.22 6.30 -52.49 -0.33 0.89 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 42 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 43 H 0.08 1.20 7.41 -51.93 -0.38 0.82 16 44 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 45 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 46 H 0.14 2.81 6.49 -51.93 -0.34 2.47 16 47 H 0.08 1.19 6.67 -51.93 -0.35 0.84 16 48 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 49 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 407.40 15.07 6.14 6.14 Total: -1.00 -31.72 407.40 -8.57 -40.29 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.43 Total: 2.47 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.88 Total: 3.24 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.26 Total: -49.07 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.11 Total: -18.27 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.72 -8.57 -40.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297907.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.821 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds