Wall clock time and date at job start Sat Apr 11 2020 07:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99865 * 2 1 4 4 C 1.46899 * 111.00354 * 123.95776 * 2 1 3 5 5 C 1.52999 * 109.47077 * 76.23261 * 4 2 1 6 6 O 1.42898 * 109.47262 * 64.43094 * 5 4 2 7 7 C 1.35902 * 116.99803 * 180.02562 * 6 5 4 8 8 C 1.38736 * 120.05728 * 359.72103 * 7 6 5 9 9 C 1.38142 * 119.94326 * 179.70381 * 8 7 6 10 10 C 1.38264 * 120.05604 * 0.59811 * 9 8 7 11 11 C 1.50703 * 119.94564 * 179.70437 * 10 9 8 12 12 C 1.52998 * 109.46849 * 269.97830 * 11 10 9 13 13 C 1.50703 * 109.47227 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99591 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99875 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99543 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00393 * 29.07648 * 16 15 13 18 18 C 1.38952 * 120.00058 * 209.07537 * 16 15 13 19 19 N 1.31415 * 119.99615 * 354.72910 * 18 16 15 20 20 Si 1.86796 * 120.00255 * 174.72895 * 18 16 15 21 21 H 1.48499 * 109.47409 * 60.00003 * 20 18 16 22 22 H 1.48503 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47241 * 299.99864 * 20 18 16 24 24 C 1.46494 * 120.00182 * 0.02562 * 15 13 12 25 25 C 1.47198 * 109.47151 * 84.47978 * 24 15 13 26 26 N 8.91660 * 157.67074 * 207.52169 * 5 1 2 27 27 C 1.38268 * 120.11355 * 359.67673 * 10 9 8 28 28 C 1.38150 * 120.05087 * 0.02769 * 27 10 9 29 29 H 1.09002 * 109.46907 * 296.03573 * 1 2 3 30 30 H 1.08997 * 109.47365 * 56.04435 * 1 2 3 31 31 H 1.09005 * 109.46570 * 176.04436 * 1 2 3 32 32 H 1.08992 * 109.47268 * 188.80031 * 3 2 1 33 33 H 1.08999 * 109.47262 * 308.80420 * 3 2 1 34 34 H 1.09005 * 109.46600 * 68.80075 * 3 2 1 35 35 H 1.08999 * 109.46565 * 316.23002 * 4 2 1 36 36 H 1.09000 * 109.46984 * 196.22830 * 4 2 1 37 37 H 1.09000 * 109.46928 * 304.42813 * 5 4 2 38 38 H 1.08996 * 109.46946 * 184.43723 * 5 4 2 39 39 H 1.08001 * 120.02436 * 359.97438 * 8 7 6 40 40 H 1.08000 * 119.97057 * 180.27906 * 9 8 7 41 41 H 1.08992 * 109.47032 * 29.97389 * 11 10 9 42 42 H 1.09005 * 109.47401 * 149.97793 * 11 10 9 43 43 H 1.09005 * 109.47064 * 299.99913 * 12 11 10 44 44 H 1.08996 * 109.47379 * 59.99886 * 12 11 10 45 45 H 0.96997 * 119.99750 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.46926 * 204.47558 * 24 15 13 47 47 H 1.09000 * 109.47481 * 324.47404 * 24 15 13 48 48 H 1.07994 * 119.97882 * 179.97438 * 27 10 9 49 49 H 1.08000 * 120.02342 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8579 -2.2628 0.8519 6 8 2.6774 -2.6119 -0.2655 7 6 2.6697 -3.9144 -0.6532 8 6 1.8938 -4.8386 0.0313 9 6 1.8830 -6.1608 -0.3686 10 6 2.6540 -6.5658 -1.4424 11 6 2.6455 -8.0102 -1.8725 12 6 3.7430 -8.7710 -1.1258 13 6 3.7349 -10.2153 -1.5563 14 8 2.9307 -10.5981 -2.3796 15 7 4.6219 -11.0811 -1.0271 16 6 4.6141 -12.3951 -1.4183 17 1 4.2809 -12.6611 -2.4106 18 6 5.0349 -13.3845 -0.5382 19 7 5.5373 -13.0541 0.6303 20 14 4.8866 -15.1843 -1.0159 21 1 5.6798 -15.4370 -2.2456 22 1 5.4017 -16.0335 0.0880 23 1 3.4609 -15.5131 -1.2701 24 6 5.5935 -10.6185 -0.0331 25 6 4.9755 -10.6370 1.3028 26 7 4.5011 -10.6483 2.3360 27 6 3.4326 -5.6478 -2.1229 28 6 3.4421 -4.3232 -1.7306 29 1 -0.3633 0.4511 0.9234 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0737 1.3468 -0.1572 33 1 1.5244 1.9415 -0.8008 34 1 1.7786 1.8438 0.9582 35 1 1.4329 -0.5144 2.0365 36 1 3.0469 -0.5197 1.2859 37 1 0.8172 -2.4953 0.6259 38 1 2.1752 -2.8303 1.7267 39 1 1.2955 -4.5237 0.8735 40 1 1.2757 -6.8798 0.1612 41 1 1.6761 -8.4520 -1.6422 42 1 2.8269 -8.0709 -2.9456 43 1 4.7125 -8.3291 -1.3560 44 1 3.5616 -8.7103 -0.0528 45 1 5.8314 -13.7448 1.2446 46 1 6.4623 -11.2766 -0.0406 47 1 5.9052 -9.6024 -0.2751 48 1 4.0343 -5.9666 -2.9611 49 1 4.0507 -3.6066 -2.2621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931297907.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:24 Heat of formation + Delta-G solvation = -25.561381 kcal Electronic energy + Delta-G solvation = -28958.085091 eV Core-core repulsion = 24885.441364 eV Total energy + Delta-G solvation = -4072.643726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.13109 -40.58004 -39.05068 -37.86236 -37.52553 -36.13473 -34.40808 -33.59493 -32.03124 -31.23256 -29.81074 -29.01624 -28.47924 -26.86778 -25.57980 -24.75403 -23.55167 -22.24974 -21.52610 -20.61888 -19.64534 -19.13208 -18.24927 -17.95489 -17.28134 -17.06588 -16.62485 -16.10978 -15.96878 -15.91614 -15.90455 -15.63270 -15.43453 -15.12719 -14.70510 -14.56890 -14.41019 -14.16820 -13.88397 -13.72962 -13.56133 -13.43292 -13.29392 -13.25474 -13.06836 -12.96473 -12.90034 -12.60508 -12.44473 -12.35380 -12.29207 -12.22350 -12.11546 -12.08483 -11.84544 -11.57108 -11.49240 -11.00984 -10.40925 -9.87351 -9.84044 -9.28280 -8.92688 -8.34678 -6.03905 0.47208 0.52434 1.41392 1.45541 1.53234 1.87895 2.08358 2.28996 2.33132 2.37881 2.83966 2.98889 3.04302 3.20759 3.65864 3.84285 3.90224 3.98430 4.02188 4.08122 4.23689 4.24650 4.26987 4.39061 4.42502 4.42612 4.47539 4.53983 4.58201 4.63921 4.65792 4.74779 4.81348 4.84000 4.87747 5.02057 5.03087 5.03774 5.08980 5.20613 5.30242 5.41497 5.46551 5.48353 5.81952 5.89821 6.05193 6.09129 6.12455 6.45280 6.58464 7.05219 7.15110 7.37977 7.95788 8.65623 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025954 B = 0.001803 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.566635 B =15522.748577 C =16026.277465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.564 5.564 3 C 0.026 3.974 4 C 0.056 3.944 5 C 0.060 3.940 6 O -0.312 6.312 7 C 0.117 3.883 8 C -0.211 4.211 9 C -0.087 4.087 10 C -0.123 4.123 11 C -0.048 4.048 12 C -0.118 4.118 13 C 0.456 3.544 14 O -0.613 6.613 15 N -0.463 5.463 16 C -0.330 4.330 17 H 0.081 0.919 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.984 3.016 21 H -0.260 1.260 22 H -0.280 1.280 23 H -0.286 1.286 24 C 0.223 3.777 25 C 0.264 3.736 26 N -0.518 5.518 27 C -0.074 4.074 28 C -0.157 4.157 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.272 0.728 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.147 0.853 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 26.570 0.200 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.289 5.289 3 C -0.121 4.121 4 C -0.072 4.072 5 C -0.016 4.016 6 O -0.226 6.226 7 C 0.071 3.929 8 C -0.229 4.229 9 C -0.105 4.105 10 C -0.123 4.123 11 C -0.086 4.086 12 C -0.158 4.158 13 C 0.247 3.753 14 O -0.498 6.498 15 N -0.183 5.183 16 C -0.458 4.458 17 H 0.099 0.901 18 C -0.198 4.198 19 N -0.540 5.540 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.205 1.205 23 H -0.212 1.212 24 C 0.097 3.903 25 C -0.053 4.053 26 N -0.200 5.200 27 C -0.092 4.092 28 C -0.175 4.175 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.164 0.836 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.490 26.197 0.968 26.446 hybrid contribution -0.511 -1.198 0.601 1.435 sum -4.001 24.998 1.569 25.365 Atomic orbital electron populations 1.22472 0.86751 1.02261 1.01189 1.61897 1.08622 1.14880 1.43470 1.22397 1.01017 0.87838 1.00887 1.22217 1.01886 0.90859 0.92190 1.23002 0.94536 0.96414 0.87622 1.86125 1.64855 1.22536 1.49096 1.19184 0.95628 0.83431 0.94625 1.21329 1.04357 0.93776 1.03469 1.21004 0.98037 0.95573 0.95911 1.19797 0.99612 0.95252 0.97639 1.20089 0.98098 0.90153 1.00286 1.21591 1.02494 0.90502 1.01191 1.21227 0.80642 0.89390 0.84071 1.90512 1.40910 1.80718 1.37670 1.43744 1.29296 1.08653 1.36645 1.19554 1.44543 0.82102 0.99580 0.90069 1.25970 0.95650 1.03523 0.94637 1.69739 1.40866 1.34917 1.08526 0.85109 0.78106 0.77691 0.78191 1.18427 1.20486 1.21248 1.19093 0.92191 1.02335 0.76690 1.29868 0.92147 0.88390 0.94906 1.80931 1.10385 1.14298 1.14361 1.21072 0.97354 0.91532 0.99270 1.20595 1.02456 0.96657 0.97830 0.94606 0.90925 0.91839 0.91336 0.90902 0.94794 0.90586 0.89665 0.91833 0.90667 0.84295 0.85913 0.92568 0.90622 0.86485 0.90187 0.91814 0.85214 0.85194 0.83569 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.39 127.69 1.20 1.44 16 2 N -0.56 -8.05 4.88 -948.84 -4.63 -12.68 16 3 C 0.03 0.28 9.52 127.69 1.22 1.50 16 4 C 0.06 0.69 5.39 86.30 0.46 1.16 16 5 C 0.06 0.91 4.93 71.98 0.36 1.26 16 6 O -0.31 -6.77 10.08 -92.45 -0.93 -7.70 16 7 C 0.12 2.70 6.69 22.51 0.15 2.85 16 8 C -0.21 -4.75 9.04 22.37 0.20 -4.55 16 9 C -0.09 -2.20 9.69 22.25 0.22 -1.98 16 10 C -0.12 -3.19 5.13 -19.85 -0.10 -3.29 16 11 C -0.05 -1.47 4.63 29.85 0.14 -1.33 16 12 C -0.12 -3.80 4.28 29.85 0.13 -3.68 16 13 C 0.46 20.14 7.57 87.66 0.66 20.81 16 14 O -0.61 -31.94 15.75 -3.06 -0.05 -31.99 16 15 N -0.46 -21.26 2.60 -645.43 -1.68 -22.93 16 16 C -0.33 -17.07 9.16 84.04 0.77 -16.30 16 17 H 0.08 4.45 7.51 -2.91 -0.02 4.43 16 18 C 0.00 0.15 5.35 84.93 0.45 0.61 16 19 N -0.90 -44.91 8.79 21.66 0.19 -44.72 16 20 Si 0.98 41.38 29.56 68.60 2.03 43.41 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 22 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 24 C 0.22 8.54 4.91 84.57 0.42 8.96 16 25 C 0.26 11.46 12.85 89.43 1.15 12.61 16 26 N -0.52 -24.47 18.54 20.02 0.37 -24.10 16 27 C -0.07 -1.69 9.69 22.26 0.22 -1.48 16 28 C -0.16 -3.51 9.99 22.37 0.22 -3.29 16 29 H 0.04 0.33 8.08 -2.39 -0.02 0.31 16 30 H 0.07 0.78 8.07 -2.39 -0.02 0.76 16 31 H 0.06 0.78 6.84 -2.38 -0.02 0.77 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.70 8.04 -2.39 -0.02 0.68 16 34 H 0.03 0.29 8.13 -2.38 -0.02 0.27 16 35 H 0.08 0.65 7.95 -2.39 -0.02 0.63 16 36 H 0.08 1.05 7.93 -2.39 -0.02 1.03 16 37 H 0.06 0.92 6.36 -2.39 -0.02 0.91 16 38 H 0.08 0.98 7.65 -2.39 -0.02 0.96 16 39 H 0.14 2.53 6.30 -2.91 -0.02 2.51 16 40 H 0.12 3.02 8.06 -2.91 -0.02 2.99 16 41 H 0.06 1.90 8.04 -2.39 -0.02 1.88 16 42 H 0.08 2.31 8.04 -2.38 -0.02 2.29 16 43 H 0.12 2.98 7.41 -2.38 -0.02 2.97 16 44 H 0.08 2.61 7.53 -2.39 -0.02 2.59 16 45 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 46 H 0.13 5.20 6.49 -2.39 -0.02 5.19 16 47 H 0.13 3.56 6.67 -2.39 -0.02 3.54 16 48 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 49 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -68.39 407.40 4.11 -64.28 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.95 Total: 21.13 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 7.86 Total: 15.30 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -5.75 Total: -104.43 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.98 Total: -39.69 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -68.39 4.11 -64.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297907.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.720 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds