Wall clock time and date at job start Sat Apr 11 2020 07:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99464 * 2 1 4 4 C 1.50694 * 109.47038 * 89.99800 * 3 2 1 5 5 O 1.21278 * 120.00319 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99803 * 179.97438 * 4 3 2 7 7 C 1.47023 * 125.65057 * 359.69267 * 6 4 3 8 8 C 1.54311 * 107.27929 * 180.96768 * 7 6 4 9 9 C 1.55158 * 102.86297 * 22.52701 * 8 7 6 10 10 C 1.47426 * 125.64956 * 180.02562 * 6 4 3 11 11 C 1.34773 * 120.00479 * 180.27229 * 2 1 3 12 12 O 1.21580 * 120.00279 * 179.72643 * 11 2 1 13 13 N 1.34776 * 119.99616 * 359.72768 * 11 2 1 14 14 C 1.39948 * 120.00210 * 175.41187 * 13 11 2 15 15 C 1.38861 * 120.07010 * 214.81588 * 14 13 11 16 16 C 1.38116 * 119.92763 * 179.76917 * 15 14 13 17 17 C 1.38285 * 120.07058 * 0.49758 * 16 15 14 18 18 C 1.50697 * 119.93122 * 179.72350 * 17 16 15 19 19 C 1.50694 * 109.47484 * 270.02444 * 18 17 16 20 20 H 1.08001 * 120.00002 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00194 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99764 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47444 * 59.99799 * 23 21 19 25 25 H 1.48498 * 109.47371 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46962 * 299.99861 * 23 21 19 27 27 C 1.38287 * 120.13740 * 359.75407 * 17 16 15 28 28 C 1.38114 * 120.06829 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.47173 * 90.00387 * 1 2 3 30 30 H 1.09006 * 109.47137 * 209.99735 * 1 2 3 31 31 H 1.09000 * 109.47643 * 330.00292 * 1 2 3 32 32 H 1.09004 * 109.46419 * 209.99972 * 3 2 1 33 33 H 1.08999 * 109.47281 * 329.99484 * 3 2 1 34 34 H 1.08999 * 109.88021 * 300.51762 * 7 6 4 35 35 H 1.09004 * 109.87839 * 61.67721 * 7 6 4 36 36 H 1.09001 * 110.92692 * 264.11325 * 8 7 6 37 37 H 1.08997 * 110.59225 * 140.78544 * 8 7 6 38 38 H 1.08999 * 111.00403 * 206.23070 * 9 8 7 39 39 H 1.08996 * 111.00538 * 82.37875 * 9 8 7 40 40 H 1.09006 * 110.36661 * 274.67438 * 10 6 4 41 41 H 1.09000 * 110.36579 * 36.88689 * 10 6 4 42 42 H 0.97003 * 120.00628 * 355.40707 * 13 11 2 43 43 H 1.07996 * 120.03750 * 359.97438 * 15 14 13 44 44 H 1.07997 * 119.96569 * 180.25420 * 16 15 14 45 45 H 1.09002 * 109.46904 * 30.02807 * 18 17 16 46 46 H 1.09002 * 109.46750 * 150.02180 * 18 17 16 47 47 H 0.97005 * 120.00054 * 179.97438 * 22 21 19 48 48 H 1.08000 * 119.95983 * 180.02562 * 27 17 16 49 49 H 1.07998 * 120.02696 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4484 1.7039 1.4208 5 8 2.0540 1.0216 2.3426 6 7 3.1113 2.8513 1.6670 7 6 3.6477 3.7664 0.6490 8 6 4.3427 4.9249 1.3947 9 6 4.6582 4.3035 2.7810 10 6 3.4247 3.3931 3.0018 11 6 2.1389 -1.1671 -0.0055 12 8 3.3547 -1.1670 -0.0106 13 7 1.4651 -2.3343 -0.0055 14 6 2.1610 -3.5441 -0.1082 15 6 1.6038 -4.6107 -0.8011 16 6 2.2953 -5.8018 -0.9047 17 6 3.5368 -5.9362 -0.3106 18 6 4.2858 -7.2392 -0.4203 19 6 3.9144 -8.1311 0.7363 20 1 3.2064 -7.7888 1.4765 21 6 4.4776 -9.3846 0.8488 22 7 5.3393 -9.8016 -0.0528 23 14 4.0167 -10.4904 2.2820 24 1 2.5557 -10.7549 2.2534 25 1 4.7548 -11.7744 2.1740 26 1 4.3735 -9.8208 3.5586 27 6 4.0921 -4.8775 0.3846 28 6 3.4080 -3.6821 0.4870 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 3.1498 1.1385 -0.5139 33 1 1.6083 2.0284 -0.5139 34 1 4.3683 3.2417 0.0216 35 1 2.8350 4.1570 0.0366 36 1 3.6729 5.7786 1.4983 37 1 5.2610 5.2137 0.8836 38 1 4.7181 5.0737 3.5499 39 1 5.5757 3.7161 2.7461 40 1 2.5857 3.9766 3.3809 41 1 3.6664 2.5848 3.6921 42 1 0.4977 -2.3360 0.0657 43 1 0.6322 -4.5080 -1.2614 44 1 1.8643 -6.6304 -1.4469 45 1 4.0239 -7.7311 -1.3571 46 1 5.3581 -7.0447 -0.3994 47 1 5.7359 -10.6833 0.0265 48 1 5.0620 -4.9855 0.8471 49 1 3.8421 -2.8559 1.0304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932562239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:32 Heat of formation + Delta-G solvation = -23.222379 kcal Electronic energy + Delta-G solvation = -29426.799431 eV Core-core repulsion = 25354.257131 eV Total energy + Delta-G solvation = -4072.542299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90717 -40.03944 -38.42623 -37.58186 -35.57041 -34.86072 -32.95544 -32.25756 -30.53089 -30.17821 -29.72958 -28.62175 -27.00602 -25.96698 -23.97372 -23.02527 -22.23980 -21.70478 -20.79489 -19.92252 -19.45698 -18.40723 -17.71675 -17.26977 -16.86489 -16.24930 -15.97466 -15.66394 -15.09912 -14.96420 -14.72856 -14.23034 -14.13624 -14.08271 -13.91346 -13.69274 -13.38090 -13.18079 -12.97343 -12.85900 -12.74596 -12.62851 -12.48628 -12.18003 -11.88924 -11.87163 -11.70727 -11.33402 -11.26162 -11.20946 -10.76632 -10.57536 -10.36494 -10.33877 -10.07252 -9.79282 -9.37219 -9.21821 -9.03017 -8.94009 -8.36064 -8.18180 -7.27785 -5.97627 -4.01341 1.98200 2.16025 2.31043 2.34853 2.71962 3.23171 3.36653 3.40221 3.44133 3.78164 3.96412 4.05654 4.36068 4.44587 4.46696 4.62677 4.68072 4.71048 4.75841 4.86704 4.97980 5.08920 5.13485 5.22833 5.30003 5.35069 5.36159 5.37232 5.47669 5.51520 5.64993 5.68913 5.83821 5.95878 6.05825 6.15833 6.26439 6.29800 6.54319 6.77050 7.04101 7.05477 7.12264 7.25855 7.31511 7.58936 7.81055 7.82338 7.88038 7.95320 7.98325 8.39599 8.52060 9.03807 9.61915 11.11863 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.001954 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.799132 B =14327.005208 C =15033.245834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.618 5.618 3 C 0.122 3.878 4 C 0.511 3.489 5 O -0.525 6.525 6 N -0.623 5.623 7 C 0.096 3.904 8 C -0.131 4.131 9 C -0.135 4.135 10 C 0.105 3.895 11 C 0.711 3.289 12 O -0.569 6.569 13 N -0.677 5.677 14 C 0.120 3.880 15 C -0.144 4.144 16 C -0.109 4.109 17 C -0.044 4.044 18 C 0.048 3.952 19 C -0.510 4.510 20 H 0.057 0.943 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.109 4.109 28 C -0.115 4.115 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.401 0.599 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.262 0.738 48 H 0.120 0.880 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 33.082 -1.193 34.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.355 5.355 3 C -0.005 4.005 4 C 0.298 3.702 5 O -0.400 6.400 6 N -0.360 5.360 7 C -0.027 4.027 8 C -0.169 4.169 9 C -0.173 4.173 10 C -0.018 4.018 11 C 0.413 3.587 12 O -0.445 6.445 13 N -0.325 5.325 14 C 0.027 3.973 15 C -0.165 4.165 16 C -0.128 4.128 17 C -0.045 4.045 18 C 0.012 3.988 19 C -0.548 4.548 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.128 4.128 28 C -0.135 4.135 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.238 0.762 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.138 0.862 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.148 32.496 -0.787 33.511 hybrid contribution -0.812 -0.519 0.880 1.305 sum -8.960 31.978 0.093 33.209 Atomic orbital electron populations 1.21751 0.79154 1.03522 1.01635 1.46518 1.06463 1.03917 1.78598 1.21088 1.00198 0.85755 0.93484 1.21084 0.77405 0.79090 0.92623 1.90735 1.50475 1.52470 1.46304 1.48558 1.56972 1.22461 1.08035 1.22109 0.98234 0.90904 0.91476 1.22631 1.01129 0.97108 0.96069 1.22803 0.98092 0.99032 0.97385 1.22213 0.96875 0.97320 0.85377 1.15737 0.85278 0.80143 0.77517 1.90925 1.11301 1.85647 1.56641 1.42530 1.09895 1.03494 1.76607 1.17318 0.94465 0.84455 1.01075 1.20702 1.00643 0.93853 1.01278 1.20846 0.94964 0.96188 1.00762 1.20704 0.94247 0.96672 0.92863 1.18337 0.95060 0.87658 0.97781 1.21044 1.25514 0.99326 1.08928 0.92513 1.25016 0.95100 0.97948 0.96352 1.69952 1.29270 1.19430 1.34751 0.86600 0.78564 0.79692 0.82833 1.20207 1.21292 1.20191 1.21011 1.00241 0.92035 0.99469 1.21161 0.94604 0.98048 0.99673 0.92122 0.91206 0.90801 0.86573 0.87529 0.90892 0.91179 0.90410 0.89750 0.89684 0.90343 0.91527 0.90338 0.76235 0.86922 0.86048 0.95346 0.95333 0.92856 0.86184 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.24 59.85 0.61 1.21 16 2 N -0.62 -6.95 2.36 -188.74 -0.45 -7.40 16 3 C 0.12 1.13 5.08 -5.19 -0.03 1.10 16 4 C 0.51 5.94 7.92 -10.99 -0.09 5.85 16 5 O -0.53 -8.47 16.68 5.56 0.09 -8.38 16 6 N -0.62 -5.40 3.33 -170.54 -0.57 -5.97 16 7 C 0.10 0.47 6.48 -3.07 -0.02 0.45 16 8 C -0.13 -0.46 6.95 -24.90 -0.17 -0.63 16 9 C -0.14 -0.65 7.08 -24.59 -0.17 -0.83 16 10 C 0.10 0.81 6.91 -2.54 -0.02 0.79 16 11 C 0.71 11.01 8.12 -86.92 -0.71 10.30 16 12 O -0.57 -10.91 13.35 5.30 0.07 -10.84 16 13 N -0.68 -9.89 5.22 -14.23 -0.07 -9.97 16 14 C 0.12 2.15 6.30 -83.69 -0.53 1.63 16 15 C -0.14 -2.49 9.97 -39.40 -0.39 -2.89 16 16 C -0.11 -2.19 9.69 -39.61 -0.38 -2.58 16 17 C -0.04 -1.02 5.07 -104.59 -0.53 -1.55 16 18 C 0.05 1.29 5.10 -29.04 -0.15 1.14 16 19 C -0.51 -14.67 9.09 -34.44 -0.31 -14.98 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 23 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 C -0.11 -2.37 9.69 -39.61 -0.38 -2.76 16 28 C -0.11 -2.33 8.69 -39.40 -0.34 -2.68 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.49 6.30 -51.93 -0.33 0.16 16 31 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.12 1.13 7.41 -51.93 -0.38 0.75 16 33 H 0.11 0.54 8.07 -51.93 -0.42 0.12 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.76 8.03 -51.93 -0.42 0.35 16 42 H 0.40 4.44 6.52 -40.82 -0.27 4.17 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 45 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 46 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 49 H 0.13 2.71 6.22 -52.49 -0.33 2.38 16 LS Contribution 405.10 15.07 6.10 6.10 Total: -1.00 -37.97 405.10 -10.41 -48.37 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.59 Total: 2.11 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.71 Total: -4.85 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.35 Total: -49.57 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.16 Total: -19.22 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.97 -10.41 -48.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.152 kcal (2) G-P(sol) polarization free energy of solvation -37.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds