Wall clock time and date at job start Sat Apr 11 2020 07:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99464 * 2 1 4 4 C 1.50694 * 109.47038 * 89.99800 * 3 2 1 5 5 O 1.21278 * 120.00319 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99803 * 179.97438 * 4 3 2 7 7 C 1.47023 * 125.65057 * 359.69267 * 6 4 3 8 8 C 1.54311 * 107.27929 * 180.96768 * 7 6 4 9 9 C 1.55158 * 102.86297 * 22.52701 * 8 7 6 10 10 C 1.47426 * 125.64956 * 180.02562 * 6 4 3 11 11 C 1.34773 * 120.00479 * 180.27229 * 2 1 3 12 12 O 1.21580 * 120.00279 * 179.72643 * 11 2 1 13 13 N 1.34776 * 119.99616 * 359.72768 * 11 2 1 14 14 C 1.39948 * 120.00210 * 175.41187 * 13 11 2 15 15 C 1.38861 * 120.07010 * 214.81588 * 14 13 11 16 16 C 1.38116 * 119.92763 * 179.76917 * 15 14 13 17 17 C 1.38285 * 120.07058 * 0.49758 * 16 15 14 18 18 C 1.50697 * 119.93122 * 179.72350 * 17 16 15 19 19 C 1.50694 * 109.47484 * 270.02444 * 18 17 16 20 20 H 1.08001 * 120.00002 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00194 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99764 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47444 * 59.99799 * 23 21 19 25 25 H 1.48498 * 109.47371 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46962 * 299.99861 * 23 21 19 27 27 C 1.38287 * 120.13740 * 359.75407 * 17 16 15 28 28 C 1.38114 * 120.06829 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.47173 * 90.00387 * 1 2 3 30 30 H 1.09006 * 109.47137 * 209.99735 * 1 2 3 31 31 H 1.09000 * 109.47643 * 330.00292 * 1 2 3 32 32 H 1.09004 * 109.46419 * 209.99972 * 3 2 1 33 33 H 1.08999 * 109.47281 * 329.99484 * 3 2 1 34 34 H 1.08999 * 109.88021 * 300.51762 * 7 6 4 35 35 H 1.09004 * 109.87839 * 61.67721 * 7 6 4 36 36 H 1.09001 * 110.92692 * 264.11325 * 8 7 6 37 37 H 1.08997 * 110.59225 * 140.78544 * 8 7 6 38 38 H 1.08999 * 111.00403 * 206.23070 * 9 8 7 39 39 H 1.08996 * 111.00538 * 82.37875 * 9 8 7 40 40 H 1.09006 * 110.36661 * 274.67438 * 10 6 4 41 41 H 1.09000 * 110.36579 * 36.88689 * 10 6 4 42 42 H 0.97003 * 120.00628 * 355.40707 * 13 11 2 43 43 H 1.07996 * 120.03750 * 359.97438 * 15 14 13 44 44 H 1.07997 * 119.96569 * 180.25420 * 16 15 14 45 45 H 1.09002 * 109.46904 * 30.02807 * 18 17 16 46 46 H 1.09002 * 109.46750 * 150.02180 * 18 17 16 47 47 H 0.97005 * 120.00054 * 179.97438 * 22 21 19 48 48 H 1.08000 * 119.95983 * 180.02562 * 27 17 16 49 49 H 1.07998 * 120.02696 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4484 1.7039 1.4208 5 8 2.0540 1.0216 2.3426 6 7 3.1113 2.8513 1.6670 7 6 3.6477 3.7664 0.6490 8 6 4.3427 4.9249 1.3947 9 6 4.6582 4.3035 2.7810 10 6 3.4247 3.3931 3.0018 11 6 2.1389 -1.1671 -0.0055 12 8 3.3547 -1.1670 -0.0106 13 7 1.4651 -2.3343 -0.0055 14 6 2.1610 -3.5441 -0.1082 15 6 1.6038 -4.6107 -0.8011 16 6 2.2953 -5.8018 -0.9047 17 6 3.5368 -5.9362 -0.3106 18 6 4.2858 -7.2392 -0.4203 19 6 3.9144 -8.1311 0.7363 20 1 3.2064 -7.7888 1.4765 21 6 4.4776 -9.3846 0.8488 22 7 5.3393 -9.8016 -0.0528 23 14 4.0167 -10.4904 2.2820 24 1 2.5557 -10.7549 2.2534 25 1 4.7548 -11.7744 2.1740 26 1 4.3735 -9.8208 3.5586 27 6 4.0921 -4.8775 0.3846 28 6 3.4080 -3.6821 0.4870 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 3.1498 1.1385 -0.5139 33 1 1.6083 2.0284 -0.5139 34 1 4.3683 3.2417 0.0216 35 1 2.8350 4.1570 0.0366 36 1 3.6729 5.7786 1.4983 37 1 5.2610 5.2137 0.8836 38 1 4.7181 5.0737 3.5499 39 1 5.5757 3.7161 2.7461 40 1 2.5857 3.9766 3.3809 41 1 3.6664 2.5848 3.6921 42 1 0.4977 -2.3360 0.0657 43 1 0.6322 -4.5080 -1.2614 44 1 1.8643 -6.6304 -1.4469 45 1 4.0239 -7.7311 -1.3571 46 1 5.3581 -7.0447 -0.3994 47 1 5.7359 -10.6833 0.0265 48 1 5.0620 -4.9855 0.8471 49 1 3.8421 -2.8559 1.0304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932562239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:31 Heat of formation + Delta-G solvation = -47.455788 kcal Electronic energy + Delta-G solvation = -29427.850270 eV Core-core repulsion = 25354.257131 eV Total energy + Delta-G solvation = -4073.593139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.97719 -40.94746 -39.79448 -38.39313 -36.59363 -36.32861 -34.96294 -32.95345 -32.18744 -31.76922 -30.35522 -29.36247 -28.44226 -27.15220 -25.18875 -24.37043 -23.78899 -22.34911 -22.00750 -21.19926 -20.34964 -19.42955 -18.50950 -18.46882 -18.39999 -17.53866 -17.04515 -16.74679 -16.66763 -16.05530 -15.95010 -15.77772 -15.26304 -15.04337 -14.61740 -14.49257 -14.46625 -14.31035 -14.23420 -14.13735 -13.77490 -13.67157 -13.44933 -13.29026 -13.22259 -13.15289 -12.89481 -12.60654 -12.45755 -12.20743 -12.17089 -12.07265 -11.71880 -11.60666 -11.53965 -11.27883 -11.25804 -10.90464 -10.59229 -9.84551 -9.76420 -9.71461 -8.85190 -8.17582 -6.32159 0.46659 0.57368 1.34205 1.39464 1.42702 1.50722 1.50841 1.85628 2.16075 2.40581 2.80869 3.01079 3.11229 3.42165 3.67268 3.85664 3.97295 4.04477 4.10255 4.13704 4.16540 4.28538 4.31856 4.38743 4.47247 4.57782 4.62480 4.64735 4.67950 4.71836 4.82293 4.83146 4.93368 4.97120 5.10150 5.12981 5.18681 5.24767 5.32653 5.33697 5.39551 5.43178 5.49462 5.61621 5.75446 5.76693 6.08372 6.13278 6.26329 6.42529 6.74397 6.79941 7.05683 7.35745 7.37538 8.90144 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.001954 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.799132 B =14327.005208 C =15033.245834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.612 5.612 3 C 0.122 3.878 4 C 0.501 3.499 5 O -0.584 6.584 6 N -0.622 5.622 7 C 0.086 3.914 8 C -0.123 4.123 9 C -0.130 4.130 10 C 0.096 3.904 11 C 0.702 3.298 12 O -0.615 6.615 13 N -0.666 5.666 14 C 0.134 3.866 15 C -0.124 4.124 16 C -0.110 4.110 17 C -0.075 4.075 18 C 0.058 3.942 19 C -0.528 4.528 20 H 0.054 0.946 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.966 3.034 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.272 1.272 27 C -0.121 4.121 28 C -0.125 4.125 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.421 0.579 43 H 0.162 0.838 44 H 0.131 0.869 45 H 0.010 0.990 46 H -0.002 1.002 47 H 0.266 0.734 48 H 0.107 0.893 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 35.656 -1.848 37.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.347 5.347 3 C -0.005 4.005 4 C 0.290 3.710 5 O -0.464 6.464 6 N -0.357 5.357 7 C -0.035 4.035 8 C -0.161 4.161 9 C -0.168 4.168 10 C -0.027 4.027 11 C 0.404 3.596 12 O -0.494 6.494 13 N -0.317 5.317 14 C 0.040 3.960 15 C -0.145 4.145 16 C -0.129 4.129 17 C -0.075 4.075 18 C 0.021 3.979 19 C -0.566 4.566 20 H 0.072 0.928 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.197 1.197 27 C -0.140 4.140 28 C -0.145 4.145 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.175 0.825 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.262 0.738 43 H 0.180 0.820 44 H 0.149 0.851 45 H 0.028 0.972 46 H 0.016 0.984 47 H 0.074 0.926 48 H 0.125 0.875 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.048 35.163 -1.463 36.887 hybrid contribution 0.067 -1.111 1.072 1.546 sum -10.981 34.052 -0.391 35.781 Atomic orbital electron populations 1.22074 0.76440 1.04365 1.03862 1.46633 1.08176 1.03067 1.76839 1.21358 1.00871 0.85975 0.92276 1.21552 0.77133 0.79323 0.93020 1.90700 1.53285 1.54432 1.47966 1.48715 1.55485 1.22086 1.09434 1.22440 0.99354 0.90701 0.91026 1.22665 1.02018 0.96816 0.94586 1.22790 0.96002 0.98778 0.99229 1.22342 0.98692 0.96883 0.84754 1.16031 0.84954 0.81281 0.77359 1.90899 1.13498 1.86457 1.58563 1.42364 1.10744 1.02266 1.76296 1.17393 0.93485 0.85898 0.99216 1.21009 1.01890 0.91858 0.99709 1.20982 0.93904 0.97777 1.00216 1.20416 0.95919 0.95302 0.95912 1.18081 0.93783 0.89575 0.96434 1.21354 1.25623 1.00125 1.09509 0.92769 1.25945 0.94849 0.99506 0.99222 1.70078 1.30219 1.20026 1.36644 0.85485 0.78833 0.77600 0.79043 1.18909 1.20444 1.19725 1.20898 1.00199 0.92745 1.00127 1.21078 0.96009 0.96881 1.00567 0.89013 0.91076 0.89432 0.87268 0.82510 0.90807 0.88388 0.88711 0.88283 0.87798 0.91505 0.90537 0.93554 0.73837 0.82018 0.85107 0.97181 0.98351 0.92569 0.87510 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.24 127.77 1.31 2.13 16 2 N -0.61 -12.50 2.36 -869.31 -2.05 -14.55 16 3 C 0.12 2.02 5.08 85.63 0.44 2.45 16 4 C 0.50 11.45 7.92 87.66 0.69 12.15 16 5 O -0.58 -19.39 16.68 -3.02 -0.05 -19.44 16 6 N -0.62 -10.26 3.33 -811.85 -2.70 -12.96 16 7 C 0.09 0.63 6.48 86.72 0.56 1.20 16 8 C -0.12 -0.51 6.95 31.78 0.22 -0.29 16 9 C -0.13 -1.10 7.08 31.98 0.23 -0.87 16 10 C 0.10 1.48 6.91 86.85 0.60 2.08 16 11 C 0.70 21.03 8.12 179.06 1.45 22.49 16 12 O -0.61 -23.96 13.35 -3.97 -0.05 -24.02 16 13 N -0.67 -18.13 5.22 -317.19 -1.65 -19.78 16 14 C 0.13 4.67 6.30 38.14 0.24 4.91 16 15 C -0.12 -3.98 9.97 22.39 0.22 -3.76 16 16 C -0.11 -4.37 9.69 22.25 0.22 -4.15 16 17 C -0.07 -3.56 5.07 -19.84 -0.10 -3.66 16 18 C 0.06 3.28 5.10 29.10 0.15 3.43 16 19 C -0.53 -31.38 9.09 25.60 0.23 -31.15 16 20 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 21 C 0.00 0.17 5.46 84.66 0.46 0.63 16 22 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 23 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 24 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 27 C -0.12 -5.56 9.69 22.25 0.22 -5.35 16 28 C -0.12 -5.22 8.69 22.39 0.19 -5.03 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.77 6.30 -2.38 -0.02 0.76 16 31 H 0.09 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.11 2.01 7.41 -2.39 -0.02 1.99 16 33 H 0.16 0.93 8.07 -2.39 -0.02 0.91 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 36 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 40 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.05 1.00 8.03 -2.39 -0.02 0.98 16 42 H 0.42 7.91 6.52 -92.71 -0.60 7.31 16 43 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 44 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 45 H 0.01 0.58 8.08 -2.39 -0.02 0.56 16 46 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 16 47 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 48 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 49 H 0.12 5.17 6.22 -2.91 -0.02 5.15 16 Total: -1.00 -88.61 405.10 3.48 -85.13 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.35 Total: 17.97 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 7.33 Total: -2.81 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -6.12 Total: -104.60 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -0.10 Total: -43.46 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -88.61 3.48 -85.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932562239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.671 kcal (2) G-P(sol) polarization free energy of solvation -88.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds