Wall clock time and date at job start Sat Apr 11 2020 07:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99947 * 2 1 4 4 O 1.21279 * 119.99560 * 354.93160 * 3 2 1 5 5 C 1.50690 * 119.99877 * 174.92557 * 3 2 1 6 6 N 1.46504 * 110.01896 * 324.32920 * 5 3 2 7 7 C 1.34774 * 120.00016 * 303.30055 * 6 5 3 8 8 O 1.21587 * 120.00254 * 354.91085 * 7 6 5 9 9 N 1.34785 * 119.99798 * 174.90139 * 7 6 5 10 10 C 1.39942 * 119.99631 * 184.82539 * 9 7 6 11 11 C 1.38869 * 120.07151 * 325.02815 * 10 9 7 12 12 C 1.38110 * 119.92891 * 179.77413 * 11 10 9 13 13 C 1.38279 * 120.07217 * 0.51170 * 12 11 10 14 14 C 1.50700 * 119.93233 * 179.72550 * 13 12 11 15 15 C 1.50698 * 109.46902 * 270.01766 * 14 13 12 16 16 H 1.07997 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00144 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99833 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00454 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47345 * 89.99613 * 19 17 15 21 21 H 1.48503 * 109.47074 * 210.00285 * 19 17 15 22 22 H 1.48506 * 109.46800 * 329.99759 * 19 17 15 23 23 C 1.38287 * 120.13909 * 359.73822 * 13 12 11 24 24 C 1.38111 * 120.06801 * 0.02562 * 23 13 12 25 25 C 1.54269 * 110.03073 * 202.94268 * 5 3 2 26 26 C 1.54972 * 104.15908 * 217.13628 * 25 5 3 27 27 C 1.54893 * 102.77491 * 37.88802 * 26 25 5 28 28 C 1.53874 * 110.03397 * 85.72693 * 5 3 2 29 29 H 1.08997 * 109.47384 * 59.72105 * 1 2 3 30 30 H 1.09000 * 109.46625 * 179.72265 * 1 2 3 31 31 H 1.09006 * 109.47006 * 299.71563 * 1 2 3 32 32 H 0.96999 * 120.00200 * 180.28231 * 2 1 3 33 33 H 0.97000 * 119.99635 * 123.30473 * 6 5 3 34 34 H 0.96995 * 120.00001 * 4.82446 * 9 7 6 35 35 H 1.08003 * 120.03438 * 0.02562 * 11 10 9 36 36 H 1.08004 * 119.96165 * 180.25223 * 12 11 10 37 37 H 1.08996 * 109.47119 * 30.01879 * 14 13 12 38 38 H 1.08999 * 109.47023 * 150.01807 * 14 13 12 39 39 H 0.96997 * 120.00256 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.96635 * 180.02562 * 23 13 12 41 41 H 1.07997 * 120.03624 * 179.97438 * 24 23 13 42 42 H 1.09001 * 110.48761 * 335.77895 * 25 5 3 43 43 H 1.08996 * 110.49060 * 98.42893 * 25 5 3 44 44 H 1.08992 * 110.71806 * 279.56860 * 26 25 5 45 45 H 1.09005 * 110.91880 * 156.29270 * 26 25 5 46 46 H 1.09001 * 110.48293 * 203.40271 * 27 26 25 47 47 H 1.08996 * 110.49051 * 80.76110 * 27 26 25 48 48 H 1.09006 * 110.02634 * 238.56839 * 28 5 3 49 49 H 1.09001 * 110.03268 * 359.97438 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2154 -0.0928 5 6 3.6414 1.1698 0.1154 6 7 4.0780 0.0890 1.0028 7 6 3.6087 0.0218 2.2644 8 8 2.8964 0.9076 2.6961 9 7 3.9289 -1.0275 3.0475 10 6 3.3615 -1.1489 4.3210 11 6 3.1021 -0.0141 5.0783 12 6 2.5378 -0.1371 6.3328 13 6 2.2408 -1.3890 6.8394 14 6 1.6308 -1.5199 8.2111 15 6 2.7265 -1.6405 9.2387 16 1 3.7611 -1.6245 8.9292 17 6 2.4082 -1.7724 10.5737 18 7 1.1483 -1.7934 10.9503 19 14 3.7664 -1.9212 11.8475 20 1 4.1456 -0.5680 12.3272 21 1 3.2844 -2.7352 12.9922 22 1 4.9489 -2.5789 11.2357 23 6 2.5026 -2.5213 6.0898 24 6 3.0623 -2.4048 4.8326 25 6 4.1272 2.5291 0.6596 26 6 5.4450 2.7968 -0.1108 27 6 5.1273 2.2613 -1.5291 28 6 4.2772 0.9993 -1.2754 29 1 -0.3634 0.5181 -0.8874 30 1 -0.3632 -1.0277 -0.0050 31 1 -0.3633 0.5094 0.8926 32 1 1.9500 -0.8400 -0.0041 33 1 4.7050 -0.5782 0.6824 34 1 4.5525 -1.6984 2.7284 35 1 3.3377 0.9637 4.6850 36 1 2.3321 0.7454 6.9206 37 1 1.0268 -0.6383 8.4258 38 1 1.0010 -2.4089 8.2454 39 1 0.9243 -1.8858 11.8895 40 1 2.2691 -3.4976 6.4880 41 1 3.2670 -3.2894 4.2479 42 1 3.3959 3.3088 0.4466 43 1 4.3171 2.4653 1.7310 44 1 6.2714 2.2434 0.3350 45 1 5.6681 3.8633 -0.1415 46 1 6.0469 2.0027 -2.0540 47 1 4.5575 2.9974 -2.0960 48 1 4.9113 0.1128 -1.2898 49 1 3.4990 0.9143 -2.0338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932568886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:41 Heat of formation + Delta-G solvation = -43.431070 kcal Electronic energy + Delta-G solvation = -30393.188632 eV Core-core repulsion = 26319.770018 eV Total energy + Delta-G solvation = -4073.418614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.36738 -39.83744 -38.31553 -37.50351 -34.93903 -34.81487 -33.87756 -32.92167 -30.51887 -30.25468 -29.31271 -28.70968 -26.76699 -26.31530 -23.41748 -22.35556 -22.21326 -21.79436 -20.92393 -20.12399 -19.87129 -18.45992 -18.20427 -17.07490 -16.35144 -16.26778 -15.97889 -15.50121 -15.24038 -15.02969 -14.82390 -14.71246 -14.23346 -14.19152 -13.96094 -13.55751 -13.08748 -12.98751 -12.83230 -12.61586 -12.53033 -12.42342 -12.04585 -11.93183 -11.69521 -11.62034 -11.46595 -11.28981 -11.25170 -10.94667 -10.83823 -10.59190 -10.41818 -10.39876 -10.09562 -9.85775 -9.42963 -9.32375 -9.28391 -9.21194 -8.40720 -8.26139 -7.36429 -6.01966 -4.05970 1.94348 2.08846 2.22342 2.57036 2.95269 3.14872 3.31483 3.37598 3.41340 3.94269 4.06112 4.13123 4.38335 4.39870 4.58527 4.69588 4.97291 5.01750 5.04723 5.08523 5.26683 5.30779 5.31896 5.33900 5.42391 5.50117 5.56775 5.62351 5.65579 5.71872 5.89090 5.93594 6.03536 6.09363 6.11836 6.17183 6.22184 6.26757 6.50765 6.68570 6.94841 7.00590 7.19130 7.24531 7.25697 7.53903 7.73746 7.79636 7.89388 7.93829 8.03051 8.34454 8.43468 8.99393 9.57616 11.07639 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.002250 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.742192 B =12443.402716 C =12991.938289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.729 5.729 3 C 0.526 3.474 4 O -0.529 6.529 5 C 0.178 3.822 6 N -0.740 5.740 7 C 0.698 3.302 8 O -0.555 6.555 9 N -0.679 5.679 10 C 0.119 3.881 11 C -0.115 4.115 12 C -0.109 4.109 13 C -0.042 4.042 14 C 0.048 3.952 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.109 4.109 24 C -0.144 4.144 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.118 4.118 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.398 0.602 33 H 0.398 0.602 34 H 0.400 0.600 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.262 0.738 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.117 0.967 -29.004 30.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.379 5.379 3 C 0.310 3.690 4 O -0.404 6.404 5 C 0.088 3.912 6 N -0.400 5.400 7 C 0.399 3.601 8 O -0.429 6.429 9 N -0.326 5.326 10 C 0.027 3.973 11 C -0.135 4.135 12 C -0.127 4.127 13 C -0.043 4.043 14 C 0.011 3.989 15 C -0.548 4.548 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.128 4.128 24 C -0.165 4.165 25 C -0.158 4.158 26 C -0.162 4.162 27 C -0.160 4.160 28 C -0.156 4.156 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.231 0.769 33 H 0.233 0.767 34 H 0.235 0.765 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.834 2.548 -28.550 29.467 hybrid contribution 1.491 -1.375 0.558 2.104 sum 8.325 1.173 -27.992 29.227 Atomic orbital electron populations 1.21532 0.79424 1.02165 1.02391 1.45631 1.07775 1.08576 1.75967 1.20515 0.89506 0.83735 0.75231 1.90685 1.69440 1.31418 1.48815 1.21020 0.90511 0.89181 0.90532 1.45399 1.51216 1.31593 1.11767 1.15982 0.80685 0.82921 0.80549 1.91011 1.40941 1.38227 1.72729 1.42434 1.48265 1.26351 1.15578 1.17271 1.02002 0.94285 0.83788 1.21156 1.00692 0.97974 0.93698 1.21022 0.99321 0.97874 0.94529 1.20708 0.94532 0.91910 0.97138 1.18348 0.95863 0.98251 0.86459 1.21063 0.92677 1.50212 0.90880 0.92480 1.25019 0.95499 0.95305 0.98581 1.69957 1.16560 1.50278 1.16537 0.86543 0.82068 0.78119 0.81006 1.20597 1.21195 1.19841 1.20854 0.99723 0.98977 0.93237 1.20692 1.03403 0.94839 0.97555 1.22725 0.97287 0.94593 1.01233 1.22540 0.97418 1.01434 0.94764 1.22359 0.99421 0.96381 0.97789 1.22392 0.99707 1.00088 0.93453 0.92288 0.90806 0.91968 0.76908 0.76687 0.76543 0.85257 0.86182 0.95326 0.95358 0.92863 0.86085 0.86979 0.88827 0.89713 0.91403 0.90890 0.90933 0.90886 0.89980 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.71 59.85 0.64 1.50 16 2 N -0.73 -7.32 5.36 -67.08 -0.36 -7.68 16 3 C 0.53 6.49 5.10 -10.99 -0.06 6.44 16 4 O -0.53 -8.62 15.56 5.56 0.09 -8.54 16 5 C 0.18 1.63 0.85 -131.85 -0.11 1.51 16 6 N -0.74 -5.81 4.52 -52.45 -0.24 -6.05 16 7 C 0.70 8.55 7.41 -86.91 -0.64 7.90 16 8 O -0.55 -9.44 11.52 5.29 0.06 -9.37 16 9 N -0.68 -7.77 5.34 -14.22 -0.08 -7.85 16 10 C 0.12 1.90 6.30 -83.69 -0.53 1.37 16 11 C -0.12 -2.14 8.70 -39.39 -0.34 -2.49 16 12 C -0.11 -2.25 9.69 -39.61 -0.38 -2.64 16 13 C -0.04 -0.93 5.07 -104.59 -0.53 -1.46 16 14 C 0.05 1.24 5.10 -29.04 -0.15 1.09 16 15 C -0.51 -14.34 9.09 -34.44 -0.31 -14.65 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.11 -2.08 9.69 -39.61 -0.38 -2.47 16 24 C -0.14 -2.27 9.97 -39.39 -0.39 -2.67 16 25 C -0.12 -1.29 5.54 -25.03 -0.14 -1.43 16 26 C -0.12 -0.90 6.91 -24.69 -0.17 -1.07 16 27 C -0.12 -0.69 6.83 -25.07 -0.17 -0.87 16 28 C -0.12 -0.67 6.24 -25.62 -0.16 -0.83 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.40 3.00 8.33 -40.82 -0.34 2.66 16 33 H 0.40 1.62 8.09 -40.82 -0.33 1.29 16 34 H 0.40 3.00 8.84 -40.82 -0.36 2.64 16 35 H 0.13 2.45 6.21 -52.48 -0.33 2.13 16 36 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 37 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.09 1.21 6.79 -51.93 -0.35 0.85 16 43 H 0.08 1.11 6.59 -51.93 -0.34 0.76 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.26 7.45 -51.93 -0.39 -0.13 16 49 H 0.08 0.46 7.67 -51.93 -0.40 0.06 16 LS Contribution 398.47 15.07 6.00 6.00 Total: -1.00 -36.06 398.47 -10.18 -46.24 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.45 Total: 5.72 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -3.93 Total: -9.22 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.06 Total: -47.43 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.15 Total: -17.91 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.06 -10.18 -46.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.814 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds