Wall clock time and date at job start Sat Apr 11 2020 07:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99947 * 2 1 4 4 O 1.21279 * 119.99560 * 354.93160 * 3 2 1 5 5 C 1.50690 * 119.99877 * 174.92557 * 3 2 1 6 6 N 1.46504 * 110.01896 * 324.32920 * 5 3 2 7 7 C 1.34774 * 120.00016 * 303.30055 * 6 5 3 8 8 O 1.21587 * 120.00254 * 354.91085 * 7 6 5 9 9 N 1.34785 * 119.99798 * 174.90139 * 7 6 5 10 10 C 1.39942 * 119.99631 * 184.82539 * 9 7 6 11 11 C 1.38869 * 120.07151 * 325.02815 * 10 9 7 12 12 C 1.38110 * 119.92891 * 179.77413 * 11 10 9 13 13 C 1.38279 * 120.07217 * 0.51170 * 12 11 10 14 14 C 1.50700 * 119.93233 * 179.72550 * 13 12 11 15 15 C 1.50698 * 109.46902 * 270.01766 * 14 13 12 16 16 H 1.07997 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00144 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99833 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00454 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47345 * 89.99613 * 19 17 15 21 21 H 1.48503 * 109.47074 * 210.00285 * 19 17 15 22 22 H 1.48506 * 109.46800 * 329.99759 * 19 17 15 23 23 C 1.38287 * 120.13909 * 359.73822 * 13 12 11 24 24 C 1.38111 * 120.06801 * 0.02562 * 23 13 12 25 25 C 1.54269 * 110.03073 * 202.94268 * 5 3 2 26 26 C 1.54972 * 104.15908 * 217.13628 * 25 5 3 27 27 C 1.54893 * 102.77491 * 37.88802 * 26 25 5 28 28 C 1.53874 * 110.03397 * 85.72693 * 5 3 2 29 29 H 1.08997 * 109.47384 * 59.72105 * 1 2 3 30 30 H 1.09000 * 109.46625 * 179.72265 * 1 2 3 31 31 H 1.09006 * 109.47006 * 299.71563 * 1 2 3 32 32 H 0.96999 * 120.00200 * 180.28231 * 2 1 3 33 33 H 0.97000 * 119.99635 * 123.30473 * 6 5 3 34 34 H 0.96995 * 120.00001 * 4.82446 * 9 7 6 35 35 H 1.08003 * 120.03438 * 0.02562 * 11 10 9 36 36 H 1.08004 * 119.96165 * 180.25223 * 12 11 10 37 37 H 1.08996 * 109.47119 * 30.01879 * 14 13 12 38 38 H 1.08999 * 109.47023 * 150.01807 * 14 13 12 39 39 H 0.96997 * 120.00256 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.96635 * 180.02562 * 23 13 12 41 41 H 1.07997 * 120.03624 * 179.97438 * 24 23 13 42 42 H 1.09001 * 110.48761 * 335.77895 * 25 5 3 43 43 H 1.08996 * 110.49060 * 98.42893 * 25 5 3 44 44 H 1.08992 * 110.71806 * 279.56860 * 26 25 5 45 45 H 1.09005 * 110.91880 * 156.29270 * 26 25 5 46 46 H 1.09001 * 110.48293 * 203.40271 * 27 26 25 47 47 H 1.08996 * 110.49051 * 80.76110 * 27 26 25 48 48 H 1.09006 * 110.02634 * 238.56839 * 28 5 3 49 49 H 1.09001 * 110.03268 * 359.97438 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2154 -0.0928 5 6 3.6414 1.1698 0.1154 6 7 4.0780 0.0890 1.0028 7 6 3.6087 0.0218 2.2644 8 8 2.8964 0.9076 2.6961 9 7 3.9289 -1.0275 3.0475 10 6 3.3615 -1.1489 4.3210 11 6 3.1021 -0.0141 5.0783 12 6 2.5378 -0.1371 6.3328 13 6 2.2408 -1.3890 6.8394 14 6 1.6308 -1.5199 8.2111 15 6 2.7265 -1.6405 9.2387 16 1 3.7611 -1.6245 8.9292 17 6 2.4082 -1.7724 10.5737 18 7 1.1483 -1.7934 10.9503 19 14 3.7664 -1.9212 11.8475 20 1 4.1456 -0.5680 12.3272 21 1 3.2844 -2.7352 12.9922 22 1 4.9489 -2.5789 11.2357 23 6 2.5026 -2.5213 6.0898 24 6 3.0623 -2.4048 4.8326 25 6 4.1272 2.5291 0.6596 26 6 5.4450 2.7968 -0.1108 27 6 5.1273 2.2613 -1.5291 28 6 4.2772 0.9993 -1.2754 29 1 -0.3634 0.5181 -0.8874 30 1 -0.3632 -1.0277 -0.0050 31 1 -0.3633 0.5094 0.8926 32 1 1.9500 -0.8400 -0.0041 33 1 4.7050 -0.5782 0.6824 34 1 4.5525 -1.6984 2.7284 35 1 3.3377 0.9637 4.6850 36 1 2.3321 0.7454 6.9206 37 1 1.0268 -0.6383 8.4258 38 1 1.0010 -2.4089 8.2454 39 1 0.9243 -1.8858 11.8895 40 1 2.2691 -3.4976 6.4880 41 1 3.2670 -3.2894 4.2479 42 1 3.3959 3.3088 0.4466 43 1 4.3171 2.4653 1.7310 44 1 6.2714 2.2434 0.3350 45 1 5.6681 3.8633 -0.1415 46 1 6.0469 2.0027 -2.0540 47 1 4.5575 2.9974 -2.0960 48 1 4.9113 0.1128 -1.2898 49 1 3.4990 0.9143 -2.0338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932568886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:40 Heat of formation + Delta-G solvation = -69.579071 kcal Electronic energy + Delta-G solvation = -30394.322494 eV Core-core repulsion = 26319.770018 eV Total energy + Delta-G solvation = -4074.552476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.29040 -40.95720 -39.60476 -38.36045 -36.23605 -35.83484 -35.08565 -34.53193 -32.14437 -31.73629 -30.02713 -29.58303 -28.22230 -27.34818 -25.19205 -23.81628 -23.01795 -22.90073 -21.89676 -21.34573 -20.75855 -19.42620 -19.11991 -18.51019 -18.15331 -17.24880 -16.84164 -16.71516 -16.51770 -16.04239 -15.94499 -15.88136 -15.68632 -15.29859 -14.93337 -14.59791 -14.50024 -14.27004 -14.20863 -13.89303 -13.66871 -13.33413 -13.25575 -13.17820 -13.16887 -12.74173 -12.62665 -12.44581 -12.35452 -12.12629 -12.05651 -11.99423 -11.64827 -11.56279 -11.52494 -11.27531 -11.15860 -10.86259 -10.60295 -10.19199 -10.17009 -9.73569 -8.82737 -8.17752 -6.32839 0.50745 0.60202 1.28516 1.39702 1.41321 1.52561 1.63671 1.98908 2.26297 2.40478 3.02699 3.10834 3.11164 3.44440 3.45839 3.77020 4.06938 4.16605 4.19105 4.34414 4.36546 4.40625 4.43283 4.49580 4.52011 4.61245 4.67911 4.68842 4.73912 4.79480 4.83900 4.93604 5.07191 5.15293 5.18688 5.22650 5.30805 5.33568 5.35158 5.40865 5.43988 5.45770 5.52005 5.64369 5.76589 5.94147 6.10917 6.14218 6.28021 6.45394 6.80045 6.98897 7.16484 7.35583 7.48255 8.90089 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.002250 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.742192 B =12443.402716 C =12991.938289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.719 5.719 3 C 0.514 3.486 4 O -0.580 6.580 5 C 0.182 3.818 6 N -0.711 5.711 7 C 0.697 3.303 8 O -0.604 6.604 9 N -0.661 5.661 10 C 0.140 3.860 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.075 4.075 14 C 0.057 3.943 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.967 3.033 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.262 1.262 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.110 4.110 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.029 0.971 32 H 0.413 0.587 33 H 0.424 0.576 34 H 0.426 0.574 35 H 0.122 0.878 36 H 0.102 0.898 37 H -0.005 1.005 38 H 0.007 0.993 39 H 0.265 0.735 40 H 0.127 0.873 41 H 0.164 0.836 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.063 0.937 48 H 0.122 0.878 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.537 -1.798 -32.005 34.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.370 5.370 3 C 0.300 3.700 4 O -0.459 6.459 5 C 0.091 3.909 6 N -0.372 5.372 7 C 0.398 3.602 8 O -0.481 6.481 9 N -0.310 5.310 10 C 0.046 3.954 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.076 4.076 14 C 0.020 3.980 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.132 4.132 24 C -0.143 4.143 25 C -0.164 4.164 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.148 4.148 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.048 0.952 32 H 0.249 0.751 33 H 0.264 0.736 34 H 0.266 0.734 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.013 0.987 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.182 0.818 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.120 0.880 47 H 0.082 0.918 48 H 0.141 0.859 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.323 -0.299 -31.618 33.262 hybrid contribution 0.374 -0.458 1.379 1.501 sum 10.697 -0.756 -30.239 32.084 Atomic orbital electron populations 1.21588 0.79388 1.03927 1.00863 1.45613 1.08021 1.08713 1.74669 1.21180 0.90988 0.83518 0.74331 1.90661 1.70721 1.33287 1.51225 1.21020 0.88716 0.88552 0.92616 1.45046 1.50667 1.31612 1.09833 1.16159 0.80252 0.82241 0.81583 1.91018 1.43129 1.40046 1.73956 1.42146 1.48295 1.26874 1.13727 1.17273 0.99918 0.93415 0.84832 1.21114 1.01185 0.98994 0.93161 1.20892 1.00764 0.96971 0.95699 1.20375 0.97506 0.93690 0.96033 1.18085 0.95081 0.95561 0.89276 1.21385 0.93036 1.50076 0.91872 0.92563 1.25971 0.98045 0.94737 1.00893 1.70090 1.18786 1.51145 1.17181 0.85418 0.79060 0.78336 0.78079 1.20065 1.20392 1.18594 1.20970 0.99829 0.97995 0.94412 1.21008 1.00819 0.96358 0.96150 1.22655 0.98668 0.94994 1.00057 1.22522 0.95595 1.01919 0.95436 1.22372 1.00548 0.96062 0.96559 1.22457 1.00106 1.01770 0.90474 0.92187 0.87355 0.95203 0.75119 0.73611 0.73440 0.86014 0.88004 0.98707 0.97439 0.92608 0.85503 0.81828 0.92088 0.92628 0.89932 0.91000 0.87986 0.91849 0.85937 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.71 127.77 1.37 2.99 16 2 N -0.72 -13.37 5.36 -484.52 -2.60 -15.96 16 3 C 0.51 12.52 5.10 87.65 0.45 12.97 16 4 O -0.58 -19.91 15.56 -3.03 -0.05 -19.96 16 5 C 0.18 2.99 0.85 3.58 0.00 2.99 16 6 N -0.71 -8.72 4.52 -438.11 -1.98 -10.70 16 7 C 0.70 15.48 7.41 179.05 1.33 16.81 16 8 O -0.60 -20.63 11.52 -3.99 -0.05 -20.68 16 9 N -0.66 -12.60 5.34 -317.17 -1.70 -14.30 16 10 C 0.14 4.11 6.30 38.15 0.24 4.35 16 11 C -0.12 -4.68 8.70 22.39 0.19 -4.48 16 12 C -0.12 -5.44 9.69 22.25 0.22 -5.22 16 13 C -0.08 -3.45 5.07 -19.84 -0.10 -3.55 16 14 C 0.06 3.15 5.10 29.10 0.15 3.30 16 15 C -0.53 -30.61 9.09 25.60 0.23 -30.37 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 17 C 0.00 0.08 5.46 84.65 0.46 0.54 16 18 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 19 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 C -0.11 -4.22 9.69 22.25 0.22 -4.00 16 24 C -0.12 -3.44 9.97 22.39 0.22 -3.22 16 25 C -0.12 -2.71 5.54 31.70 0.18 -2.53 16 26 C -0.12 -1.49 6.91 31.92 0.22 -1.27 16 27 C -0.12 -0.96 6.83 31.67 0.22 -0.74 16 28 C -0.11 -0.82 6.24 31.32 0.20 -0.63 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.41 4.86 8.33 -92.71 -0.77 4.08 16 33 H 0.42 1.04 8.09 -92.71 -0.75 0.29 16 34 H 0.43 3.92 8.84 -92.71 -0.82 3.10 16 35 H 0.12 4.79 6.21 -2.91 -0.02 4.77 16 36 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 37 H -0.01 -0.33 8.08 -2.39 -0.02 -0.35 16 38 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 42 H 0.06 1.72 6.79 -2.39 -0.02 1.70 16 43 H 0.05 1.51 6.59 -2.39 -0.02 1.50 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.12 -0.03 7.45 -2.38 -0.02 -0.05 16 49 H 0.08 0.66 7.67 -2.39 -0.02 0.64 16 Total: -1.00 -87.13 398.47 0.39 -86.74 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -1.35 Total: 17.07 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 5.79 Total: -12.06 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -5.99 Total: -97.97 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.09 Total: -40.64 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -87.13 0.39 -86.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.163 kcal (2) G-P(sol) polarization free energy of solvation -87.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds