Wall clock time and date at job start Sat Apr 11 2020 07:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99803 * 2 1 4 4 C 1.53006 * 109.46942 * 269.99866 * 3 2 1 5 5 N 1.46497 * 109.46942 * 179.97438 * 4 3 2 6 6 C 1.46768 * 124.35029 * 269.72271 * 5 4 3 7 7 C 1.54660 * 105.38095 * 162.85521 * 6 5 4 8 8 C 1.54633 * 101.68686 * 25.76843 * 7 6 5 9 9 C 1.34425 * 124.35036 * 90.02460 * 5 4 3 10 10 O 1.21276 * 124.94018 * 0.42906 * 9 5 4 11 11 C 1.34775 * 120.00009 * 179.97438 * 2 1 3 12 12 O 1.21582 * 119.99680 * 179.97438 * 11 2 1 13 13 N 1.34772 * 120.00058 * 359.97438 * 11 2 1 14 14 C 1.39952 * 119.99832 * 184.58529 * 13 11 2 15 15 C 1.38861 * 120.07256 * 324.91304 * 14 13 11 16 16 C 1.38116 * 119.93160 * 180.02562 * 15 14 13 17 17 C 1.38278 * 120.06803 * 0.02593 * 16 15 14 18 18 C 1.50694 * 119.92935 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47186 * 89.99663 * 18 17 16 20 20 H 1.07998 * 120.00172 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99673 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00428 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99656 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47697 * 59.99494 * 23 21 19 25 25 H 1.48504 * 109.47320 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47145 * 299.99304 * 23 21 19 27 27 C 1.38279 * 120.13849 * 0.22833 * 17 16 15 28 28 C 1.38115 * 120.07367 * 359.49638 * 27 17 16 29 29 H 1.09001 * 109.46741 * 270.00226 * 1 2 3 30 30 H 1.09002 * 109.47172 * 30.00202 * 1 2 3 31 31 H 1.08999 * 109.47038 * 150.00342 * 1 2 3 32 32 H 1.09001 * 109.47414 * 29.99671 * 3 2 1 33 33 H 1.08997 * 109.47290 * 149.99878 * 3 2 1 34 34 H 1.09001 * 109.46906 * 300.00115 * 4 3 2 35 35 H 1.09002 * 109.47138 * 60.00360 * 4 3 2 36 36 H 1.08995 * 110.24962 * 281.98442 * 6 5 4 37 37 H 1.08996 * 110.24507 * 43.98878 * 6 5 4 38 38 H 1.08995 * 111.19754 * 267.59307 * 7 6 5 39 39 H 1.09004 * 110.82051 * 143.77662 * 7 6 5 40 40 H 1.08996 * 110.48824 * 216.30423 * 8 7 6 41 41 H 1.09004 * 110.59824 * 93.71732 * 8 7 6 42 42 H 0.96997 * 120.00176 * 4.58952 * 13 11 2 43 43 H 1.07997 * 120.03473 * 359.97438 * 15 14 13 44 44 H 1.07998 * 119.96262 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47332 * 209.99730 * 18 17 16 46 46 H 1.09000 * 109.47402 * 329.99691 * 18 17 16 47 47 H 0.96999 * 120.00372 * 179.97438 * 22 21 19 48 48 H 1.08009 * 119.96092 * 179.72456 * 27 17 16 49 49 H 1.07995 * 120.03573 * 180.25334 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 7 3.1844 2.9794 -1.4426 6 6 2.5485 4.3022 -1.4486 7 6 3.6531 5.2904 -1.0067 8 6 4.9351 4.5380 -1.4327 9 6 4.5247 3.0820 -1.4429 10 8 5.2931 2.1438 -1.4506 11 6 2.1389 -1.1672 0.0005 12 8 3.3547 -1.1671 0.0001 13 7 1.4651 -2.3344 0.0016 14 6 2.1616 -3.5443 0.0990 15 6 3.4056 -3.6815 -0.5025 16 6 4.0902 -4.8771 -0.4049 17 6 3.5377 -5.9370 0.2903 18 6 4.2871 -7.2403 0.3943 19 6 5.1632 -7.2196 1.6204 20 1 5.1763 -6.3496 2.2601 21 6 5.9487 -8.3111 1.9248 22 7 5.9332 -9.3704 1.1456 23 14 7.0341 -8.2858 3.4449 24 1 6.1900 -8.1030 4.6529 25 1 7.7727 -9.5700 3.5473 26 1 8.0022 -7.1643 3.3432 27 6 2.2967 -5.8053 0.8859 28 6 1.6096 -4.6105 0.7969 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 3.0416 0.9507 -1.9563 35 1 1.5001 1.8407 -1.9564 36 1 2.1980 4.5476 -2.4511 37 1 1.7189 4.3251 -0.7421 38 1 3.6330 5.4473 0.0717 39 1 3.5614 6.2372 -1.5390 40 1 5.7333 4.7044 -0.7093 41 1 5.2515 4.8521 -2.4274 42 1 0.4974 -2.3358 -0.0653 43 1 3.8371 -2.8544 -1.0466 44 1 5.0580 -4.9842 -0.8721 45 1 3.5763 -8.0632 0.4695 46 1 4.9064 -7.3751 -0.4925 47 1 6.4861 -10.1382 1.3596 48 1 1.8659 -6.6365 1.4245 49 1 0.6423 -4.5070 1.2657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932571386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:44 Heat of formation + Delta-G solvation = -24.825951 kcal Electronic energy + Delta-G solvation = -29336.284441 eV Core-core repulsion = 25263.672605 eV Total energy + Delta-G solvation = -4072.611836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.87133 -40.43667 -38.43639 -36.75778 -36.04206 -34.90868 -33.49918 -32.81853 -30.48535 -30.18443 -29.18541 -27.96303 -27.10470 -26.28989 -24.13783 -22.85872 -22.32280 -22.22238 -20.54591 -19.75607 -19.67920 -18.45209 -17.34309 -17.05142 -16.93322 -16.23112 -15.87094 -15.69916 -15.40079 -14.83496 -14.61839 -14.16051 -14.14587 -14.07467 -13.96408 -13.75438 -13.47976 -13.41992 -13.07363 -12.95554 -12.78227 -12.62203 -12.58316 -12.45125 -11.97651 -11.89288 -11.50828 -11.41754 -11.31446 -11.16681 -10.71433 -10.57218 -10.30970 -10.15321 -10.03073 -9.66899 -9.46376 -9.40496 -9.20218 -8.75205 -8.34414 -8.19113 -7.29038 -5.96317 -3.99739 1.99215 2.14836 2.25470 2.38245 2.79357 3.19854 3.38957 3.41922 3.46854 3.77066 3.93915 3.99527 4.31535 4.45928 4.52584 4.59178 4.63697 4.65485 4.68794 4.90528 4.97197 5.00529 5.10038 5.20738 5.22102 5.31320 5.37537 5.41507 5.47551 5.50516 5.63935 5.69261 5.97550 6.04333 6.13123 6.17285 6.29164 6.32529 6.57026 6.76158 6.77979 7.03281 7.04990 7.25438 7.31239 7.59024 7.80751 7.82950 7.91219 7.95087 7.99812 8.40971 8.53399 9.05499 9.63650 11.13176 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.002059 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.080177 B =13592.788264 C =14849.287056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.634 5.634 3 C 0.121 3.879 4 C 0.112 3.888 5 N -0.622 5.622 6 C 0.102 3.898 7 C -0.132 4.132 8 C -0.156 4.156 9 C 0.511 3.489 10 O -0.514 6.514 11 C 0.699 3.301 12 O -0.557 6.557 13 N -0.680 5.680 14 C 0.118 3.882 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.044 4.044 18 C 0.048 3.952 19 C -0.510 4.510 20 H 0.057 0.943 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.109 4.109 28 C -0.145 4.145 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.399 0.601 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.028 0.972 46 H 0.029 0.971 47 H 0.262 0.738 48 H 0.121 0.879 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.306 31.530 -6.141 36.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.373 5.373 3 C -0.004 4.004 4 C -0.012 4.012 5 N -0.358 5.358 6 C -0.021 4.021 7 C -0.170 4.170 8 C -0.196 4.196 9 C 0.298 3.702 10 O -0.388 6.388 11 C 0.401 3.599 12 O -0.431 6.431 13 N -0.329 5.329 14 C 0.025 3.975 15 C -0.135 4.135 16 C -0.127 4.127 17 C -0.044 4.044 18 C 0.012 3.988 19 C -0.548 4.548 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.128 4.128 28 C -0.165 4.165 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.236 0.764 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.139 0.861 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.965 30.821 -6.152 34.810 hybrid contribution -0.138 0.059 0.876 0.889 sum -15.103 30.880 -5.277 34.778 Atomic orbital electron populations 1.21760 0.79732 1.02991 1.02007 1.46934 1.06272 1.04763 1.79295 1.21636 0.98389 0.83521 0.96862 1.21765 0.96836 0.84861 0.97725 1.48217 1.06897 1.06313 1.74369 1.22128 0.96397 0.81782 1.01811 1.22627 0.93358 0.98337 1.02657 1.22344 0.99487 0.92942 1.04837 1.21008 0.82180 0.91592 0.75444 1.90833 1.55349 1.44057 1.48584 1.15920 0.85506 0.80252 0.78229 1.91016 1.11093 1.85409 1.55621 1.42586 1.09687 1.03600 1.77020 1.17315 0.94616 0.84431 1.01090 1.21172 0.94467 0.97948 0.99929 1.21026 0.99620 0.92179 0.99902 1.20708 0.93232 0.97932 0.92564 1.18341 0.94594 0.88138 0.97761 1.21052 1.23919 1.01129 1.08684 0.92512 1.25008 0.96990 0.95475 0.96909 1.69947 1.40379 1.05251 1.37891 0.86603 0.80664 0.77179 0.83284 1.20218 1.21283 1.20129 1.20848 0.95168 0.96592 1.00186 1.20699 1.00884 0.93831 1.01104 0.92349 0.90747 0.91373 0.90471 0.89149 0.89312 0.90447 0.91013 0.90389 0.89831 0.89139 0.87945 0.87819 0.76429 0.85246 0.86130 0.95350 0.95312 0.92870 0.86070 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 10.24 59.85 0.61 1.03 16 2 N -0.63 -6.39 2.87 -187.35 -0.54 -6.93 16 3 C 0.12 1.15 5.73 -4.04 -0.02 1.12 16 4 C 0.11 1.00 6.26 -4.04 -0.03 0.98 16 5 N -0.62 -5.09 2.93 -172.30 -0.51 -5.60 16 6 C 0.10 0.38 7.36 -3.02 -0.02 0.36 16 7 C -0.13 -0.39 7.19 -25.00 -0.18 -0.57 16 8 C -0.16 -0.94 6.86 -26.74 -0.18 -1.12 16 9 C 0.51 5.63 8.02 -10.86 -0.09 5.54 16 10 O -0.51 -8.70 17.59 5.56 0.10 -8.61 16 11 C 0.70 10.41 8.12 -86.92 -0.71 9.70 16 12 O -0.56 -11.08 13.36 5.29 0.07 -11.01 16 13 N -0.68 -9.29 5.22 -14.23 -0.07 -9.36 16 14 C 0.12 2.08 6.30 -83.69 -0.53 1.55 16 15 C -0.12 -2.31 8.69 -39.40 -0.34 -2.65 16 16 C -0.11 -2.37 9.69 -39.61 -0.38 -2.75 16 17 C -0.04 -1.00 5.07 -104.59 -0.53 -1.53 16 18 C 0.05 1.30 5.10 -29.04 -0.15 1.15 16 19 C -0.51 -14.88 9.09 -34.44 -0.31 -15.19 16 20 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 23 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.11 -2.19 9.69 -39.61 -0.38 -2.58 16 28 C -0.14 -2.47 9.97 -39.39 -0.39 -2.86 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 31 H 0.07 0.30 6.30 -51.93 -0.33 -0.02 16 32 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.09 1.22 7.42 -51.93 -0.39 0.83 16 34 H 0.09 1.14 7.92 -51.93 -0.41 0.73 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.40 3.85 6.52 -40.82 -0.27 3.58 16 43 H 0.13 2.67 6.22 -52.49 -0.33 2.34 16 44 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 45 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 46 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 49 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -38.96 407.01 -10.42 -49.38 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.59 Total: 1.24 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.73 Total: -6.26 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.38 Total: -48.31 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.17 Total: -19.62 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.96 -10.42 -49.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932571386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.550 kcal (2) G-P(sol) polarization free energy of solvation -38.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds