Wall clock time and date at job start Sat Apr 11 2020 07:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99803 * 2 1 4 4 C 1.53006 * 109.46942 * 269.99866 * 3 2 1 5 5 N 1.46497 * 109.46942 * 179.97438 * 4 3 2 6 6 C 1.46768 * 124.35029 * 269.72271 * 5 4 3 7 7 C 1.54660 * 105.38095 * 162.85521 * 6 5 4 8 8 C 1.54633 * 101.68686 * 25.76843 * 7 6 5 9 9 C 1.34425 * 124.35036 * 90.02460 * 5 4 3 10 10 O 1.21276 * 124.94018 * 0.42906 * 9 5 4 11 11 C 1.34775 * 120.00009 * 179.97438 * 2 1 3 12 12 O 1.21582 * 119.99680 * 179.97438 * 11 2 1 13 13 N 1.34772 * 120.00058 * 359.97438 * 11 2 1 14 14 C 1.39952 * 119.99832 * 184.58529 * 13 11 2 15 15 C 1.38861 * 120.07256 * 324.91304 * 14 13 11 16 16 C 1.38116 * 119.93160 * 180.02562 * 15 14 13 17 17 C 1.38278 * 120.06803 * 0.02593 * 16 15 14 18 18 C 1.50694 * 119.92935 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47186 * 89.99663 * 18 17 16 20 20 H 1.07998 * 120.00172 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99673 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00428 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99656 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47697 * 59.99494 * 23 21 19 25 25 H 1.48504 * 109.47320 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47145 * 299.99304 * 23 21 19 27 27 C 1.38279 * 120.13849 * 0.22833 * 17 16 15 28 28 C 1.38115 * 120.07367 * 359.49638 * 27 17 16 29 29 H 1.09001 * 109.46741 * 270.00226 * 1 2 3 30 30 H 1.09002 * 109.47172 * 30.00202 * 1 2 3 31 31 H 1.08999 * 109.47038 * 150.00342 * 1 2 3 32 32 H 1.09001 * 109.47414 * 29.99671 * 3 2 1 33 33 H 1.08997 * 109.47290 * 149.99878 * 3 2 1 34 34 H 1.09001 * 109.46906 * 300.00115 * 4 3 2 35 35 H 1.09002 * 109.47138 * 60.00360 * 4 3 2 36 36 H 1.08995 * 110.24962 * 281.98442 * 6 5 4 37 37 H 1.08996 * 110.24507 * 43.98878 * 6 5 4 38 38 H 1.08995 * 111.19754 * 267.59307 * 7 6 5 39 39 H 1.09004 * 110.82051 * 143.77662 * 7 6 5 40 40 H 1.08996 * 110.48824 * 216.30423 * 8 7 6 41 41 H 1.09004 * 110.59824 * 93.71732 * 8 7 6 42 42 H 0.96997 * 120.00176 * 4.58952 * 13 11 2 43 43 H 1.07997 * 120.03473 * 359.97438 * 15 14 13 44 44 H 1.07998 * 119.96262 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47332 * 209.99730 * 18 17 16 46 46 H 1.09000 * 109.47402 * 329.99691 * 18 17 16 47 47 H 0.96999 * 120.00372 * 179.97438 * 22 21 19 48 48 H 1.08009 * 119.96092 * 179.72456 * 27 17 16 49 49 H 1.07995 * 120.03573 * 180.25334 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 7 3.1844 2.9794 -1.4426 6 6 2.5485 4.3022 -1.4486 7 6 3.6531 5.2904 -1.0067 8 6 4.9351 4.5380 -1.4327 9 6 4.5247 3.0820 -1.4429 10 8 5.2931 2.1438 -1.4506 11 6 2.1389 -1.1672 0.0005 12 8 3.3547 -1.1671 0.0001 13 7 1.4651 -2.3344 0.0016 14 6 2.1616 -3.5443 0.0990 15 6 3.4056 -3.6815 -0.5025 16 6 4.0902 -4.8771 -0.4049 17 6 3.5377 -5.9370 0.2903 18 6 4.2871 -7.2403 0.3943 19 6 5.1632 -7.2196 1.6204 20 1 5.1763 -6.3496 2.2601 21 6 5.9487 -8.3111 1.9248 22 7 5.9332 -9.3704 1.1456 23 14 7.0341 -8.2858 3.4449 24 1 6.1900 -8.1030 4.6529 25 1 7.7727 -9.5700 3.5473 26 1 8.0022 -7.1643 3.3432 27 6 2.2967 -5.8053 0.8859 28 6 1.6096 -4.6105 0.7969 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 3.0416 0.9507 -1.9563 35 1 1.5001 1.8407 -1.9564 36 1 2.1980 4.5476 -2.4511 37 1 1.7189 4.3251 -0.7421 38 1 3.6330 5.4473 0.0717 39 1 3.5614 6.2372 -1.5390 40 1 5.7333 4.7044 -0.7093 41 1 5.2515 4.8521 -2.4274 42 1 0.4974 -2.3358 -0.0653 43 1 3.8371 -2.8544 -1.0466 44 1 5.0580 -4.9842 -0.8721 45 1 3.5763 -8.0632 0.4695 46 1 4.9064 -7.3751 -0.4925 47 1 6.4861 -10.1382 1.3596 48 1 1.8659 -6.6365 1.4245 49 1 0.6423 -4.5070 1.2657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932571386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:43 Heat of formation + Delta-G solvation = -51.252218 kcal Electronic energy + Delta-G solvation = -29337.430370 eV Core-core repulsion = 25263.672605 eV Total energy + Delta-G solvation = -4073.757764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.90331 -41.29201 -39.89171 -37.66443 -36.99287 -36.34470 -35.06726 -33.98809 -32.17325 -31.77984 -29.98171 -28.47981 -28.43460 -27.40715 -25.46289 -24.38057 -23.77714 -22.71473 -22.07752 -20.99082 -20.43495 -19.50431 -18.53512 -18.38017 -17.91411 -17.54989 -16.97309 -16.71736 -16.61355 -16.18745 -15.96930 -15.79022 -15.17835 -14.88976 -14.72609 -14.62474 -14.48799 -14.46369 -14.28472 -14.17245 -14.02235 -13.63941 -13.45392 -13.33029 -13.28617 -13.20371 -13.01644 -12.61755 -12.47945 -12.33745 -12.12381 -12.06180 -11.84591 -11.75376 -11.57324 -11.19558 -10.94545 -10.88092 -10.61177 -10.19121 -9.77755 -9.54535 -8.85448 -8.19795 -6.34183 0.46011 0.55936 1.33390 1.36731 1.40154 1.48353 1.54424 1.94608 2.13332 2.38591 2.87104 2.99676 3.08690 3.41935 3.64626 3.85503 3.95548 4.03899 4.09338 4.15296 4.20701 4.25760 4.28609 4.37746 4.49674 4.60450 4.61284 4.66297 4.70880 4.72427 4.74879 4.86977 4.89251 4.89548 5.11975 5.12089 5.25247 5.25531 5.31514 5.37567 5.41607 5.48504 5.59714 5.61473 5.74330 5.80320 6.07288 6.11819 6.12196 6.25231 6.77529 6.80182 7.13217 7.33618 7.41519 8.87636 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.002059 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.080177 B =13592.788264 C =14849.287056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.622 5.622 3 C 0.126 3.874 4 C 0.115 3.885 5 N -0.618 5.618 6 C 0.096 3.904 7 C -0.119 4.119 8 C -0.152 4.152 9 C 0.490 3.510 10 O -0.595 6.595 11 C 0.690 3.310 12 O -0.617 6.617 13 N -0.664 5.664 14 C 0.135 3.865 15 C -0.126 4.126 16 C -0.123 4.123 17 C -0.075 4.075 18 C 0.058 3.942 19 C -0.530 4.530 20 H 0.049 0.951 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.964 3.036 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.275 1.275 27 C -0.111 4.111 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.424 0.576 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.013 0.987 46 H -0.001 1.001 47 H 0.266 0.734 48 H 0.131 0.869 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.505 35.231 -4.808 41.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.359 5.359 3 C 0.001 3.999 4 C -0.008 4.008 5 N -0.352 5.352 6 C -0.025 4.025 7 C -0.157 4.157 8 C -0.192 4.192 9 C 0.279 3.721 10 O -0.475 6.475 11 C 0.392 3.608 12 O -0.496 6.496 13 N -0.315 5.315 14 C 0.040 3.960 15 C -0.146 4.146 16 C -0.142 4.142 17 C -0.076 4.076 18 C 0.021 3.979 19 C -0.568 4.568 20 H 0.067 0.933 21 C -0.193 4.193 22 N -0.567 5.567 23 Si 0.788 3.212 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.141 0.859 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.137 0.863 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.265 0.735 43 H 0.135 0.865 44 H 0.122 0.878 45 H 0.031 0.969 46 H 0.018 0.982 47 H 0.075 0.925 48 H 0.149 0.851 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.304 34.608 -4.827 39.921 hybrid contribution 1.046 -0.940 0.391 1.460 sum -18.258 33.668 -4.437 38.556 Atomic orbital electron populations 1.22180 0.75904 1.05405 1.03817 1.46984 1.08413 1.03104 1.77375 1.21660 0.97035 0.84198 0.97021 1.21664 0.97556 0.84350 0.97278 1.48431 1.06355 1.07906 1.72472 1.22534 0.97020 0.79002 1.03946 1.22694 0.90607 0.98856 1.03521 1.22392 1.01333 0.89698 1.05737 1.22039 0.82872 0.92947 0.74203 1.90781 1.57490 1.46864 1.52373 1.16244 0.84968 0.81626 0.77956 1.90999 1.14137 1.86403 1.58105 1.42338 1.10647 1.01991 1.76508 1.17373 0.93536 0.85993 0.99071 1.21096 0.95995 0.96655 1.00870 1.20906 0.99549 0.93058 1.00711 1.20413 0.95009 0.96482 0.95667 1.18082 0.93956 0.90008 0.95806 1.21342 1.24887 1.01063 1.09516 0.93276 1.25908 0.98293 0.94966 1.00177 1.70062 1.41186 1.05880 1.39605 0.85525 0.78724 0.77491 0.79471 1.18947 1.20080 1.20021 1.20990 0.94058 0.98286 0.99601 1.21021 1.02150 0.91773 0.99502 0.90750 0.87237 0.90217 0.85873 0.94190 0.94546 0.86290 0.89010 0.87535 0.89135 0.86077 0.88183 0.86516 0.73535 0.86535 0.87778 0.96909 0.98243 0.92496 0.85081 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 10.24 127.77 1.31 1.69 16 2 N -0.62 -11.19 2.87 -864.91 -2.49 -13.67 16 3 C 0.13 2.22 5.73 86.38 0.50 2.72 16 4 C 0.12 1.98 6.26 86.38 0.54 2.52 16 5 N -0.62 -9.48 2.93 -817.62 -2.40 -11.88 16 6 C 0.10 0.33 7.36 86.89 0.64 0.97 16 7 C -0.12 -0.28 7.19 31.72 0.23 -0.05 16 8 C -0.15 -1.70 6.86 30.59 0.21 -1.49 16 9 C 0.49 11.43 8.02 87.90 0.70 12.14 16 10 O -0.59 -22.60 17.59 -3.02 -0.05 -22.66 16 11 C 0.69 20.30 8.12 179.06 1.45 21.76 16 12 O -0.62 -26.10 13.36 -3.97 -0.05 -26.15 16 13 N -0.66 -16.76 5.22 -317.19 -1.65 -18.42 16 14 C 0.13 4.61 6.30 38.14 0.24 4.85 16 15 C -0.13 -5.30 8.69 22.39 0.19 -5.11 16 16 C -0.12 -5.79 9.69 22.25 0.22 -5.57 16 17 C -0.07 -3.62 5.07 -19.85 -0.10 -3.72 16 18 C 0.06 3.33 5.10 29.10 0.15 3.47 16 19 C -0.53 -32.29 9.09 25.60 0.23 -32.05 16 20 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 21 C 0.00 0.29 5.46 84.66 0.46 0.75 16 22 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 23 Si 0.96 46.90 29.54 68.60 2.03 48.93 16 24 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 27 C -0.11 -4.41 9.69 22.25 0.22 -4.19 16 28 C -0.12 -3.93 9.97 22.39 0.22 -3.71 16 29 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.11 -0.06 8.07 -2.39 -0.02 -0.08 16 31 H 0.08 0.30 6.30 -2.39 -0.02 0.29 16 32 H 0.12 1.05 8.07 -2.39 -0.02 1.03 16 33 H 0.04 1.14 7.42 -2.39 -0.02 1.12 16 34 H 0.04 1.02 7.92 -2.39 -0.02 1.00 16 35 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.03 8.14 -2.39 -0.02 0.02 16 37 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.12 -0.37 8.14 -2.38 -0.02 -0.39 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.12 0.98 8.14 -2.38 -0.02 0.97 16 42 H 0.42 6.44 6.52 -92.71 -0.60 5.84 16 43 H 0.12 5.22 6.22 -2.91 -0.02 5.21 16 44 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 45 H 0.01 0.74 8.08 -2.39 -0.02 0.72 16 46 H 0.00 -0.05 8.08 -2.39 -0.02 -0.07 16 47 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 48 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 49 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -97.11 407.01 3.43 -93.68 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.35 Total: 12.90 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 7.41 Total: -5.02 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -6.25 Total: -101.68 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.11 Total: -48.81 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -97.11 3.43 -93.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932571386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.427 kcal (2) G-P(sol) polarization free energy of solvation -97.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds