Wall clock time and date at job start Sat Apr 11 2020 07:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 119.99948 * 2 1 4 4 O 1.21280 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99954 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.43297 * 85.53744 * 5 3 2 7 7 C 1.54893 * 110.60017 * 322.92156 * 5 3 2 8 8 C 1.54888 * 102.74906 * 203.32081 * 7 5 3 9 9 C 1.54272 * 104.19585 * 37.94129 * 8 7 5 10 10 C 1.53880 * 106.59602 * 336.39075 * 9 8 7 11 11 H 1.08996 * 110.06970 * 240.69102 * 10 9 8 12 12 N 1.46501 * 110.03074 * 119.28286 * 10 9 8 13 13 C 1.34776 * 119.99947 * 91.86641 * 12 10 9 14 14 O 1.21590 * 120.00017 * 0.02562 * 13 12 10 15 15 N 1.34776 * 120.00023 * 179.97438 * 13 12 10 16 16 C 1.39949 * 119.99892 * 185.10186 * 15 13 12 17 17 C 1.38870 * 120.06890 * 30.95061 * 16 15 13 18 18 C 1.38113 * 119.92860 * 179.97438 * 17 16 15 19 19 C 1.38278 * 120.07042 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.93133 * 180.02562 * 19 18 17 21 21 C 1.50703 * 109.47365 * 270.02047 * 20 19 18 22 22 H 1.08003 * 119.99310 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00311 * 179.97438 * 21 20 19 24 24 N 1.31510 * 119.99941 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99967 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47160 * 89.99942 * 25 23 21 27 27 H 1.48493 * 109.47053 * 210.00187 * 25 23 21 28 28 H 1.48505 * 109.47232 * 329.99716 * 25 23 21 29 29 C 1.38285 * 120.14427 * 0.04562 * 19 18 17 30 30 C 1.38117 * 120.06570 * 359.95345 * 29 19 18 31 31 H 1.08995 * 109.47020 * 59.99779 * 1 2 3 32 32 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46906 * 300.00016 * 1 2 3 34 34 H 0.96994 * 120.00237 * 179.97438 * 2 1 3 35 35 H 1.08993 * 110.75432 * 321.63513 * 7 5 3 36 36 H 1.09004 * 110.75762 * 84.82324 * 7 5 3 37 37 H 1.08999 * 110.48583 * 156.61795 * 8 7 5 38 38 H 1.09000 * 110.48665 * 279.26670 * 8 7 5 39 39 H 1.09000 * 110.03442 * 217.10422 * 9 8 7 40 40 H 1.08998 * 110.03126 * 95.67231 * 9 8 7 41 41 H 0.96996 * 119.99889 * 271.86263 * 12 10 9 42 42 H 0.96994 * 120.00136 * 5.10510 * 15 13 12 43 43 H 1.07997 * 120.03648 * 359.70384 * 17 16 15 44 44 H 1.07998 * 119.96787 * 179.97438 * 18 17 16 45 45 H 1.08997 * 109.47319 * 30.02373 * 20 19 18 46 46 H 1.09006 * 109.47588 * 150.02436 * 20 19 18 47 47 H 0.96993 * 119.99920 * 180.02562 * 24 23 21 48 48 H 1.07993 * 119.97041 * 179.97438 * 29 19 18 49 49 H 1.07996 * 120.03842 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0268 1.0875 -1.0175 7 6 4.1905 0.0107 0.8752 8 6 5.6092 0.5055 1.2514 9 6 5.4339 2.0217 1.4760 10 6 4.1855 2.4423 0.6806 11 1 4.4541 3.1824 -0.0731 12 7 3.1752 2.9936 1.5871 13 6 3.1388 4.3188 1.8297 14 8 3.9440 5.0570 1.2958 15 7 2.2090 4.8260 2.6632 16 6 2.1021 6.2111 2.8326 17 6 2.4202 7.0667 1.7860 18 6 2.3132 8.4331 1.9562 19 6 1.8893 8.9494 3.1669 20 6 1.7731 10.4408 3.3489 21 6 3.0812 10.9881 3.8593 22 1 3.9136 10.3224 4.0340 23 6 3.2157 12.3386 4.1024 24 7 2.2022 13.1492 3.8892 25 14 4.8373 13.0169 4.7343 26 1 5.6993 13.3907 3.5843 27 1 4.5798 14.2168 5.5704 28 1 5.5221 11.9825 5.5507 29 6 1.5722 8.1002 4.2112 30 6 1.6771 6.7328 4.0473 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.9500 -0.8400 0.0004 35 1 3.5781 -0.1205 1.7672 36 1 4.2406 -0.9158 0.3031 37 1 5.9520 0.0215 2.1659 38 1 6.3072 0.3190 0.4352 39 1 6.3091 2.5573 1.1081 40 1 5.2880 2.2276 2.5363 41 1 2.5326 2.4047 2.0127 42 1 1.6140 4.2311 3.1457 43 1 2.7551 6.6642 0.8414 44 1 2.5608 9.0991 1.1428 45 1 1.5329 10.9060 2.3929 46 1 0.9830 10.6588 4.0676 47 1 2.2970 14.0993 4.0598 48 1 1.2418 8.5065 5.1556 49 1 1.4289 6.0700 4.8630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932571583.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:47 Heat of formation + Delta-G solvation = -40.595586 kcal Electronic energy + Delta-G solvation = -29830.470669 eV Core-core repulsion = 25757.175010 eV Total energy + Delta-G solvation = -4073.295658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.10120 -39.93948 -38.35556 -37.50097 -35.17405 -34.63075 -33.59165 -32.79654 -30.32248 -30.27235 -30.10262 -28.08573 -26.79801 -26.24427 -23.32247 -22.40381 -22.19483 -21.32270 -20.84888 -20.14612 -19.97954 -18.52420 -17.97789 -16.99294 -16.22947 -16.17776 -16.13184 -15.72259 -15.21474 -15.04356 -14.77145 -14.59652 -14.34225 -14.09894 -13.92726 -13.62365 -13.19406 -12.98910 -12.83013 -12.78083 -12.65478 -12.49355 -12.18590 -11.80941 -11.79719 -11.60571 -11.40842 -11.34939 -11.14518 -11.04801 -10.68778 -10.51776 -10.25295 -10.16097 -10.05133 -9.63768 -9.61343 -9.38658 -9.14376 -8.97798 -8.32909 -8.12487 -7.16239 -5.94335 -3.97615 2.11322 2.21195 2.23316 2.68580 2.79240 3.37890 3.40217 3.43514 3.48976 3.85797 4.00069 4.15424 4.35491 4.49161 4.60085 4.72033 4.78418 4.87706 4.90641 5.01847 5.05771 5.10099 5.15467 5.30930 5.35396 5.39510 5.51856 5.56308 5.62391 5.73811 5.82120 5.87993 5.91125 6.10657 6.22310 6.26586 6.35722 6.49343 6.72886 6.83322 6.97257 7.12763 7.23490 7.31484 7.36938 7.62841 7.78803 7.88442 7.99645 8.02117 8.08442 8.44036 8.73931 9.08061 9.65638 11.15131 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.002103 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.002596 B =13313.323297 C =14214.261916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.737 5.737 3 C 0.513 3.487 4 O -0.516 6.516 5 C -0.124 4.124 6 H 0.119 0.881 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.138 4.138 10 C 0.180 3.820 11 H 0.101 0.899 12 N -0.725 5.725 13 C 0.709 3.291 14 O -0.575 6.575 15 N -0.680 5.680 16 C 0.129 3.871 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.049 4.049 20 C 0.049 3.951 21 C -0.508 4.508 22 H 0.057 0.943 23 C 0.056 3.944 24 N -0.896 5.896 25 Si 0.894 3.106 26 H -0.280 1.280 27 H -0.287 1.287 28 H -0.273 1.273 29 C -0.107 4.107 30 C -0.150 4.150 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.401 0.599 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.391 0.609 42 H 0.398 0.602 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.261 0.739 48 H 0.120 0.880 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 -35.710 -6.689 36.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.390 5.390 3 C 0.298 3.702 4 O -0.390 6.390 5 C -0.146 4.146 6 H 0.137 0.863 7 C -0.159 4.159 8 C -0.159 4.159 9 C -0.177 4.177 10 C 0.074 3.926 11 H 0.119 0.881 12 N -0.380 5.380 13 C 0.410 3.590 14 O -0.451 6.451 15 N -0.326 5.326 16 C 0.036 3.964 17 C -0.139 4.139 18 C -0.125 4.125 19 C -0.049 4.049 20 C 0.012 3.988 21 C -0.546 4.546 22 H 0.075 0.925 23 C -0.145 4.145 24 N -0.535 5.535 25 Si 0.722 3.278 26 H -0.206 1.206 27 H -0.213 1.213 28 H -0.198 1.198 29 C -0.126 4.126 30 C -0.171 4.171 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.235 0.765 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.225 0.775 42 H 0.232 0.768 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.070 0.930 48 H 0.138 0.862 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.162 -34.104 -7.207 34.857 hybrid contribution 0.453 -0.669 0.762 1.111 sum 0.614 -34.773 -6.446 35.371 Atomic orbital electron populations 1.21546 0.79555 1.02183 1.02547 1.45917 1.07773 1.08756 1.76586 1.20521 0.89682 0.83738 0.76231 1.90822 1.70011 1.30868 1.47332 1.22593 0.91961 0.97497 1.02569 0.86346 1.22614 0.97345 0.96745 0.99245 1.22338 0.96096 0.95559 1.01936 1.22698 0.98086 0.95557 1.01403 1.21149 0.86655 0.93334 0.91508 0.88123 1.44979 1.36405 1.06225 1.50377 1.15802 0.81180 0.82122 0.79887 1.90935 1.41941 1.57944 1.54302 1.42421 1.36742 1.06142 1.47336 1.17312 1.03913 0.80826 0.94363 1.21094 1.01470 0.93068 0.98312 1.20987 0.99712 0.93832 0.98002 1.20663 0.93441 0.98689 0.92151 1.18329 0.97615 0.84887 0.97954 1.21106 0.97494 0.92430 1.43562 0.92460 1.25013 0.96647 0.97049 0.95742 1.69959 1.30490 1.03895 1.49187 0.86546 0.83896 0.78440 0.78897 1.20614 1.21253 1.19829 1.20826 1.01004 0.91671 0.99088 1.20659 1.05914 0.95764 0.94730 0.92170 0.90721 0.92120 0.76547 0.90830 0.90525 0.91047 0.90977 0.90427 0.90756 0.77514 0.76776 0.85411 0.86250 0.95388 0.95407 0.92960 0.86171 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 10.70 59.85 0.64 1.03 16 2 N -0.74 -3.38 5.55 -67.08 -0.37 -3.75 16 3 C 0.51 4.00 6.28 -10.99 -0.07 3.93 16 4 O -0.52 -6.49 14.55 5.56 0.08 -6.41 16 5 C -0.12 -0.73 3.32 -90.11 -0.30 -1.03 16 6 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 7 C -0.12 -0.39 5.32 -24.74 -0.13 -0.53 16 8 C -0.12 -0.54 6.83 -25.07 -0.17 -0.71 16 9 C -0.14 -1.07 6.60 -25.61 -0.17 -1.24 16 10 C 0.18 1.68 3.02 -66.81 -0.20 1.48 16 11 H 0.10 1.20 7.44 -51.93 -0.39 0.82 16 12 N -0.72 -8.12 3.17 -57.58 -0.18 -8.31 16 13 C 0.71 11.16 8.32 -86.92 -0.72 10.43 16 14 O -0.57 -11.37 13.44 5.29 0.07 -11.30 16 15 N -0.68 -10.19 5.36 -14.22 -0.08 -10.27 16 16 C 0.13 2.39 6.33 -83.68 -0.53 1.86 16 17 C -0.12 -2.47 8.67 -39.39 -0.34 -2.81 16 18 C -0.11 -2.37 9.69 -39.61 -0.38 -2.75 16 19 C -0.05 -1.14 5.07 -104.59 -0.53 -1.67 16 20 C 0.05 1.32 5.10 -29.03 -0.15 1.17 16 21 C -0.51 -14.89 9.09 -34.44 -0.31 -15.20 16 22 H 0.06 1.69 7.74 -52.48 -0.41 1.28 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 24 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 25 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 29 C -0.11 -2.22 9.69 -39.61 -0.38 -2.60 16 30 C -0.15 -2.69 9.96 -39.39 -0.39 -3.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.40 0.67 7.87 -40.82 -0.32 0.35 16 35 H 0.07 0.24 8.05 -51.93 -0.42 -0.18 16 36 H 0.08 0.09 8.06 -51.93 -0.42 -0.33 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 41 H 0.39 3.66 7.28 -40.82 -0.30 3.37 16 42 H 0.40 4.55 8.82 -40.82 -0.36 4.19 16 43 H 0.13 2.70 6.21 -52.49 -0.33 2.38 16 44 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 45 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 46 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 49 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -37.42 400.71 -10.52 -47.94 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.55 Total: 5.36 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -4.24 Total: -10.14 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.11 Total: -48.89 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.15 Total: -17.71 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.42 -10.52 -47.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932571583.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.343 kcal (2) G-P(sol) polarization free energy of solvation -37.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds