Wall clock time and date at job start Sat Apr 11 2020 07:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 119.99948 * 2 1 4 4 O 1.21280 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99954 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.43297 * 85.53744 * 5 3 2 7 7 C 1.54893 * 110.60017 * 322.92156 * 5 3 2 8 8 C 1.54888 * 102.74906 * 203.32081 * 7 5 3 9 9 C 1.54272 * 104.19585 * 37.94129 * 8 7 5 10 10 C 1.53880 * 106.59602 * 336.39075 * 9 8 7 11 11 H 1.08996 * 110.06970 * 240.69102 * 10 9 8 12 12 N 1.46501 * 110.03074 * 119.28286 * 10 9 8 13 13 C 1.34776 * 119.99947 * 91.86641 * 12 10 9 14 14 O 1.21590 * 120.00017 * 0.02562 * 13 12 10 15 15 N 1.34776 * 120.00023 * 179.97438 * 13 12 10 16 16 C 1.39949 * 119.99892 * 185.10186 * 15 13 12 17 17 C 1.38870 * 120.06890 * 30.95061 * 16 15 13 18 18 C 1.38113 * 119.92860 * 179.97438 * 17 16 15 19 19 C 1.38278 * 120.07042 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.93133 * 180.02562 * 19 18 17 21 21 C 1.50703 * 109.47365 * 270.02047 * 20 19 18 22 22 H 1.08003 * 119.99310 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00311 * 179.97438 * 21 20 19 24 24 N 1.31510 * 119.99941 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99967 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47160 * 89.99942 * 25 23 21 27 27 H 1.48493 * 109.47053 * 210.00187 * 25 23 21 28 28 H 1.48505 * 109.47232 * 329.99716 * 25 23 21 29 29 C 1.38285 * 120.14427 * 0.04562 * 19 18 17 30 30 C 1.38117 * 120.06570 * 359.95345 * 29 19 18 31 31 H 1.08995 * 109.47020 * 59.99779 * 1 2 3 32 32 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46906 * 300.00016 * 1 2 3 34 34 H 0.96994 * 120.00237 * 179.97438 * 2 1 3 35 35 H 1.08993 * 110.75432 * 321.63513 * 7 5 3 36 36 H 1.09004 * 110.75762 * 84.82324 * 7 5 3 37 37 H 1.08999 * 110.48583 * 156.61795 * 8 7 5 38 38 H 1.09000 * 110.48665 * 279.26670 * 8 7 5 39 39 H 1.09000 * 110.03442 * 217.10422 * 9 8 7 40 40 H 1.08998 * 110.03126 * 95.67231 * 9 8 7 41 41 H 0.96996 * 119.99889 * 271.86263 * 12 10 9 42 42 H 0.96994 * 120.00136 * 5.10510 * 15 13 12 43 43 H 1.07997 * 120.03648 * 359.70384 * 17 16 15 44 44 H 1.07998 * 119.96787 * 179.97438 * 18 17 16 45 45 H 1.08997 * 109.47319 * 30.02373 * 20 19 18 46 46 H 1.09006 * 109.47588 * 150.02436 * 20 19 18 47 47 H 0.96993 * 119.99920 * 180.02562 * 24 23 21 48 48 H 1.07993 * 119.97041 * 179.97438 * 29 19 18 49 49 H 1.07996 * 120.03842 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0268 1.0875 -1.0175 7 6 4.1905 0.0107 0.8752 8 6 5.6092 0.5055 1.2514 9 6 5.4339 2.0217 1.4760 10 6 4.1855 2.4423 0.6806 11 1 4.4541 3.1824 -0.0731 12 7 3.1752 2.9936 1.5871 13 6 3.1388 4.3188 1.8297 14 8 3.9440 5.0570 1.2958 15 7 2.2090 4.8260 2.6632 16 6 2.1021 6.2111 2.8326 17 6 2.4202 7.0667 1.7860 18 6 2.3132 8.4331 1.9562 19 6 1.8893 8.9494 3.1669 20 6 1.7731 10.4408 3.3489 21 6 3.0812 10.9881 3.8593 22 1 3.9136 10.3224 4.0340 23 6 3.2157 12.3386 4.1024 24 7 2.2022 13.1492 3.8892 25 14 4.8373 13.0169 4.7343 26 1 5.6993 13.3907 3.5843 27 1 4.5798 14.2168 5.5704 28 1 5.5221 11.9825 5.5507 29 6 1.5722 8.1002 4.2112 30 6 1.6771 6.7328 4.0473 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.9500 -0.8400 0.0004 35 1 3.5781 -0.1205 1.7672 36 1 4.2406 -0.9158 0.3031 37 1 5.9520 0.0215 2.1659 38 1 6.3072 0.3190 0.4352 39 1 6.3091 2.5573 1.1081 40 1 5.2880 2.2276 2.5363 41 1 2.5326 2.4047 2.0127 42 1 1.6140 4.2311 3.1457 43 1 2.7551 6.6642 0.8414 44 1 2.5608 9.0991 1.1428 45 1 1.5329 10.9060 2.3929 46 1 0.9830 10.6588 4.0676 47 1 2.2970 14.0993 4.0598 48 1 1.2418 8.5065 5.1556 49 1 1.4289 6.0700 4.8630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932571583.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:46 Heat of formation + Delta-G solvation = -66.527312 kcal Electronic energy + Delta-G solvation = -29831.595153 eV Core-core repulsion = 25757.175010 eV Total energy + Delta-G solvation = -4074.420142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.98916 -41.03311 -39.68576 -38.33420 -36.22128 -35.75401 -35.03515 -34.37652 -32.08529 -31.75534 -30.78495 -29.05573 -27.93334 -27.19780 -25.17940 -23.86194 -23.07667 -22.53723 -21.63642 -21.38456 -20.75045 -19.71382 -18.78913 -18.50633 -18.10195 -16.97928 -16.82862 -16.74116 -16.59195 -16.15192 -15.92966 -15.74217 -15.48657 -15.39024 -14.88141 -14.60866 -14.49061 -14.43239 -14.23964 -13.83610 -13.70442 -13.43480 -13.32074 -13.17008 -13.10706 -12.65669 -12.61423 -12.45315 -12.35854 -12.04244 -12.02301 -11.95267 -11.70807 -11.56856 -11.48918 -11.18263 -10.93429 -10.79354 -10.60057 -10.17048 -9.94185 -9.75810 -8.78972 -8.17674 -6.32500 0.50099 0.58108 1.38261 1.40124 1.51595 1.60026 1.61714 2.12827 2.28858 2.40407 3.03463 3.10439 3.16912 3.32664 3.55366 3.86113 4.05156 4.16912 4.19863 4.34150 4.39498 4.42572 4.44014 4.51380 4.57708 4.61564 4.64769 4.66692 4.73383 4.76884 4.97486 4.99486 5.04518 5.13763 5.22282 5.24573 5.30837 5.33593 5.40984 5.42802 5.46443 5.51860 5.57173 5.65063 5.76613 5.96439 6.09469 6.14412 6.27715 6.57849 6.79586 6.98503 7.29301 7.35419 7.52674 8.89664 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.002103 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.002596 B =13313.323297 C =14214.261916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.717 5.717 3 C 0.510 3.490 4 O -0.573 6.573 5 C -0.115 4.115 6 H 0.134 0.866 7 C -0.110 4.110 8 C -0.113 4.113 9 C -0.137 4.137 10 C 0.169 3.831 11 H 0.065 0.935 12 N -0.703 5.703 13 C 0.702 3.298 14 O -0.620 6.620 15 N -0.669 5.669 16 C 0.142 3.858 17 C -0.129 4.129 18 C -0.118 4.118 19 C -0.079 4.079 20 C 0.059 3.941 21 C -0.528 4.528 22 H 0.050 0.950 23 C 0.004 3.996 24 N -0.929 5.929 25 Si 0.965 3.035 26 H -0.274 1.274 27 H -0.275 1.275 28 H -0.267 1.267 29 C -0.109 4.109 30 C -0.132 4.132 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.049 0.951 34 H 0.419 0.581 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.403 0.597 42 H 0.419 0.581 43 H 0.119 0.881 44 H 0.108 0.892 45 H 0.000 1.000 46 H 0.010 0.990 47 H 0.266 0.734 48 H 0.130 0.870 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -40.101 -5.514 40.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.370 5.370 3 C 0.297 3.703 4 O -0.451 6.451 5 C -0.137 4.137 6 H 0.152 0.848 7 C -0.147 4.147 8 C -0.151 4.151 9 C -0.176 4.176 10 C 0.063 3.937 11 H 0.083 0.917 12 N -0.358 5.358 13 C 0.403 3.597 14 O -0.501 6.501 15 N -0.317 5.317 16 C 0.047 3.953 17 C -0.150 4.150 18 C -0.137 4.137 19 C -0.079 4.079 20 C 0.022 3.978 21 C -0.566 4.566 22 H 0.068 0.932 23 C -0.194 4.194 24 N -0.569 5.569 25 Si 0.789 3.211 26 H -0.200 1.200 27 H -0.200 1.200 28 H -0.191 1.191 29 C -0.128 4.128 30 C -0.153 4.153 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.068 0.932 34 H 0.257 0.743 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.239 0.761 42 H 0.257 0.743 43 H 0.136 0.864 44 H 0.126 0.874 45 H 0.018 0.982 46 H 0.029 0.971 47 H 0.075 0.925 48 H 0.148 0.852 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.928 -38.632 -6.026 39.110 hybrid contribution 0.166 0.552 0.320 0.659 sum 1.095 -38.080 -5.706 38.521 Atomic orbital electron populations 1.21631 0.79322 1.04039 1.01159 1.45785 1.07965 1.08674 1.74622 1.20833 0.90344 0.83728 0.75427 1.90808 1.71115 1.32956 1.50270 1.22567 0.90781 0.96641 1.03687 0.84820 1.22646 0.96088 0.96684 0.99299 1.22318 0.97276 0.92471 1.03030 1.22634 0.96503 0.98378 1.00039 1.21355 0.87304 0.94099 0.90954 0.91653 1.44856 1.36541 1.04635 1.49726 1.16065 0.80808 0.83254 0.79604 1.90910 1.43790 1.59416 1.55942 1.42253 1.37012 1.04997 1.47445 1.17403 1.01828 0.82261 0.93815 1.21035 1.02304 0.92676 0.98951 1.20892 1.00605 0.94591 0.97584 1.20390 0.96773 0.96921 0.93862 1.18070 0.96319 0.87652 0.95713 1.21379 0.98157 0.92986 1.44074 0.93161 1.25923 1.00517 0.97266 0.95721 1.70075 1.32646 1.04367 1.49818 0.85446 0.79144 0.77968 0.78508 1.19958 1.20009 1.19119 1.20963 1.00524 0.92746 0.98527 1.20959 1.03821 0.95034 0.95447 0.93993 0.87203 0.93176 0.74345 0.90192 0.86956 0.89900 0.89779 0.91815 0.91993 0.76085 0.74321 0.86359 0.87373 0.98181 0.97146 0.92531 0.85241 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.70 127.77 1.37 1.94 16 2 N -0.72 -4.45 5.55 -484.52 -2.69 -7.14 16 3 C 0.51 7.06 6.28 87.66 0.55 7.61 16 4 O -0.57 -14.26 14.55 -3.03 -0.04 -14.30 16 5 C -0.11 -1.11 3.32 -10.47 -0.03 -1.14 16 6 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 7 C -0.11 -0.25 5.32 31.89 0.17 -0.08 16 8 C -0.11 -0.64 6.83 31.67 0.22 -0.42 16 9 C -0.14 -1.99 6.60 31.32 0.21 -1.78 16 10 C 0.17 3.12 3.02 45.72 0.14 3.25 16 11 H 0.07 1.68 7.44 -2.39 -0.02 1.66 16 12 N -0.70 -15.45 3.17 -454.35 -1.44 -16.89 16 13 C 0.70 22.20 8.32 179.05 1.49 23.69 16 14 O -0.62 -25.54 13.44 -4.00 -0.05 -25.60 16 15 N -0.67 -19.29 5.36 -317.17 -1.70 -20.99 16 16 C 0.14 5.15 6.33 38.15 0.24 5.39 16 17 C -0.13 -5.54 8.67 22.39 0.19 -5.35 16 18 C -0.12 -5.54 9.69 22.25 0.22 -5.32 16 19 C -0.08 -3.84 5.07 -19.84 -0.10 -3.94 16 20 C 0.06 3.40 5.10 29.10 0.15 3.54 16 21 C -0.53 -32.07 9.09 25.60 0.23 -31.84 16 22 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 23 C 0.00 0.22 5.46 84.66 0.46 0.69 16 24 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 25 Si 0.97 46.61 29.54 68.60 2.03 48.64 16 26 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 28 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 29 C -0.11 -4.49 9.69 22.25 0.22 -4.27 16 30 C -0.13 -4.47 9.96 22.39 0.22 -4.25 16 31 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.42 -0.45 7.87 -92.71 -0.73 -1.18 16 35 H 0.08 0.15 8.05 -2.39 -0.02 0.13 16 36 H 0.11 -0.42 8.06 -2.39 -0.02 -0.44 16 37 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.06 7.92 -2.39 -0.02 1.04 16 41 H 0.40 6.96 7.28 -92.71 -0.67 6.29 16 42 H 0.42 8.54 8.82 -92.71 -0.82 7.72 16 43 H 0.12 5.30 6.21 -2.91 -0.02 5.28 16 44 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 45 H 0.00 -0.01 8.08 -2.39 -0.02 -0.03 16 46 H 0.01 0.61 8.08 -2.38 -0.02 0.59 16 47 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 48 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 49 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -87.13 400.71 1.09 -86.04 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -1.23 Total: 20.30 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 5.94 Total: -12.27 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -5.54 Total: -102.81 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.10 Total: -39.90 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -87.13 1.09 -86.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932571583.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.512 kcal (2) G-P(sol) polarization free energy of solvation -87.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds