Wall clock time and date at job start Sat Apr 11 2020 07:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99853 * 2 1 4 4 O 1.21269 * 120.00295 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99354 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.49794 * 299.93174 * 5 3 2 7 7 C 1.53038 * 109.51840 * 179.85366 * 5 3 2 8 8 C 1.53041 * 109.53924 * 178.66699 * 7 5 3 9 9 C 1.52769 * 109.38140 * 61.23414 * 8 7 5 10 10 N 1.46915 * 109.00916 * 305.59410 * 9 8 7 11 11 C 1.34776 * 120.63029 * 233.58070 * 10 9 8 12 12 O 1.21588 * 120.00411 * 184.89140 * 11 10 9 13 13 N 1.34783 * 119.99773 * 4.89472 * 11 10 9 14 14 C 1.39948 * 119.99670 * 185.22395 * 13 11 10 15 15 C 1.38867 * 120.06861 * 33.15655 * 14 13 11 16 16 C 1.38118 * 119.92513 * 179.97438 * 15 14 13 17 17 C 1.38279 * 120.07075 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.92779 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.47256 * 89.99892 * 18 17 16 20 20 H 1.08000 * 119.99889 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99763 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99523 * 180.27762 * 21 19 18 23 23 Si 1.86797 * 120.00474 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46982 * 89.99898 * 23 21 19 25 25 H 1.48493 * 109.47345 * 209.99995 * 23 21 19 26 26 H 1.48502 * 109.46751 * 329.99966 * 23 21 19 27 27 C 1.38277 * 120.14246 * 0.27246 * 17 16 15 28 28 C 1.38118 * 120.06556 * 359.44901 * 27 17 16 29 29 C 1.46921 * 118.74266 * 53.30890 * 10 9 8 30 30 H 1.09001 * 109.47559 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47379 * 300.00368 * 1 2 3 32 32 H 1.09007 * 109.46906 * 60.00460 * 1 2 3 33 33 H 0.97001 * 119.99450 * 179.97438 * 2 1 3 34 34 H 1.09003 * 109.46170 * 298.68248 * 7 5 3 35 35 H 1.08995 * 109.46737 * 58.64543 * 7 5 3 36 36 H 1.08994 * 109.50397 * 181.31246 * 8 7 5 37 37 H 1.09001 * 109.49741 * 301.38430 * 8 7 5 38 38 H 1.08997 * 109.50503 * 185.70420 * 9 8 7 39 39 H 1.09001 * 109.42999 * 65.43047 * 9 8 7 40 40 H 0.96999 * 119.99999 * 5.21973 * 13 11 10 41 41 H 1.07993 * 120.03793 * 359.97438 * 15 14 13 42 42 H 1.08004 * 119.96267 * 180.02562 * 16 15 14 43 43 H 1.08997 * 109.47708 * 329.99961 * 18 17 16 44 44 H 1.09003 * 109.47291 * 209.99997 * 18 17 16 45 45 H 0.96994 * 119.99588 * 179.72667 * 22 21 19 46 46 H 1.07997 * 119.96766 * 179.72868 * 27 17 16 47 47 H 1.08003 * 120.03426 * 180.25094 * 28 27 17 48 48 H 1.09000 * 109.58852 * 66.42918 * 29 10 9 49 49 H 1.09000 * 109.59175 * 186.85311 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2174 -0.0005 5 6 3.6459 1.1671 0.0006 6 1 4.0093 0.6546 0.8913 7 6 4.1574 2.6095 -0.0032 8 6 5.6874 2.6101 0.0309 9 6 6.2226 1.9035 -1.2133 10 7 5.6211 0.5659 -1.3000 11 6 6.3971 -0.5296 -1.4179 12 8 5.8870 -1.6217 -1.5781 13 7 7.7387 -0.4147 -1.3582 14 6 8.5477 -1.5330 -1.5894 15 6 8.1455 -2.5080 -2.4928 16 6 8.9465 -3.6102 -2.7190 17 6 10.1474 -3.7437 -2.0467 18 6 11.0186 -4.9479 -2.2956 19 6 11.9721 -4.6534 -3.4249 20 1 11.9492 -3.6906 -3.9138 21 6 12.8736 -5.6131 -3.8340 22 7 13.7094 -5.3541 -4.8159 23 14 12.9127 -7.2785 -2.9890 24 1 11.9864 -8.2081 -3.6840 25 1 14.2922 -7.8261 -3.0376 26 1 12.4906 -7.1254 -1.5735 27 6 10.5478 -2.7777 -1.1420 28 6 9.7541 -1.6703 -0.9155 29 6 4.1577 0.4447 -1.2496 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.9499 -0.8401 0.0004 34 1 3.8142 3.1141 -0.9064 35 1 3.7745 3.1329 0.8727 36 1 6.0505 3.6376 0.0517 37 1 6.0316 2.0844 0.9216 38 1 7.3065 1.8130 -1.1426 39 1 5.9592 2.4808 -2.0996 40 1 8.1434 0.4431 -1.1551 41 1 7.2075 -2.4044 -3.0178 42 1 8.6344 -4.3686 -3.4219 43 1 10.3932 -5.8002 -2.5612 44 1 11.5845 -5.1797 -1.3934 45 1 14.3463 -6.0278 -5.1010 46 1 11.4842 -2.8870 -0.6152 47 1 10.0692 -0.9141 -0.2117 48 1 3.7224 0.9006 -2.1389 49 1 3.8796 -0.6081 -1.2029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932576996.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:02 Heat of formation + Delta-G solvation = -36.562020 kcal Electronic energy + Delta-G solvation = -29506.986564 eV Core-core repulsion = 25433.865814 eV Total energy + Delta-G solvation = -4073.120750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19099 -40.19182 -38.70940 -37.39287 -35.13188 -35.02704 -33.48152 -32.75598 -31.93513 -30.65766 -30.33844 -27.50237 -27.18655 -25.54836 -24.32553 -22.93734 -22.40370 -21.85779 -20.75143 -20.23131 -19.64871 -18.79290 -17.67943 -17.13669 -16.75479 -16.42655 -16.04145 -15.81496 -15.41696 -14.90881 -14.83238 -14.70752 -14.49786 -14.31622 -14.08646 -13.68457 -13.42022 -13.35942 -13.22654 -12.96352 -12.85907 -12.71701 -12.43625 -12.38346 -12.01060 -11.69735 -11.51735 -11.47359 -11.41431 -11.13966 -10.86424 -10.50444 -10.38237 -10.25571 -10.16293 -9.90758 -9.60480 -9.58337 -9.31940 -9.03664 -8.57170 -8.33185 -7.38456 -6.06342 -4.05126 1.87566 2.01585 2.07720 2.37349 2.77132 3.03767 3.29906 3.37532 3.40575 3.56201 4.11091 4.18985 4.34375 4.42698 4.43788 4.47485 4.54762 4.73212 4.83657 4.94129 5.03820 5.06845 5.20269 5.25400 5.29691 5.33849 5.35385 5.38193 5.44000 5.52488 5.62940 5.81183 5.84860 5.92066 5.92824 5.96234 6.12192 6.12969 6.45925 6.58357 6.83242 6.92092 6.97055 6.97905 7.05785 7.09738 7.60127 7.62165 7.69595 7.73305 7.74282 8.37394 8.51137 8.99217 9.54196 11.06583 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.001906 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.706576 B =14690.570219 C =15455.787509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.735 5.735 3 C 0.521 3.479 4 O -0.536 6.536 5 C -0.125 4.125 6 H 0.103 0.897 7 C -0.098 4.098 8 C -0.137 4.137 9 C 0.107 3.893 10 N -0.628 5.628 11 C 0.707 3.293 12 O -0.570 6.570 13 N -0.680 5.680 14 C 0.126 3.874 15 C -0.116 4.116 16 C -0.104 4.104 17 C -0.040 4.040 18 C 0.014 3.986 19 C -0.511 4.511 20 H 0.074 0.926 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 C -0.104 4.104 28 C -0.145 4.145 29 C 0.142 3.858 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.405 0.595 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.401 0.599 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.023 0.977 44 H 0.028 0.972 45 H 0.264 0.736 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.072 0.928 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.134 16.240 11.936 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.387 5.387 3 C 0.307 3.693 4 O -0.412 6.412 5 C -0.148 4.148 6 H 0.121 0.879 7 C -0.136 4.136 8 C -0.175 4.175 9 C -0.016 4.016 10 N -0.366 5.366 11 C 0.410 3.590 12 O -0.446 6.446 13 N -0.329 5.329 14 C 0.033 3.967 15 C -0.136 4.136 16 C -0.123 4.123 17 C -0.041 4.041 18 C -0.023 4.023 19 C -0.549 4.549 20 H 0.092 0.908 21 C -0.133 4.133 22 N -0.539 5.539 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 C -0.123 4.123 28 C -0.165 4.165 29 C 0.018 3.982 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.240 0.760 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.238 0.762 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.042 0.958 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.141 0.859 47 H 0.132 0.868 48 H 0.091 0.909 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.852 16.154 11.687 30.327 hybrid contribution 0.576 -0.777 0.448 1.066 sum -22.276 15.376 12.135 29.663 Atomic orbital electron populations 1.21564 0.79419 1.02473 1.02345 1.45898 1.08027 1.08966 1.75803 1.20478 0.89632 0.83635 0.75566 1.90709 1.70249 1.31279 1.48985 1.21793 0.91648 0.99998 1.01318 0.87888 1.21321 0.94515 0.93790 1.04000 1.21902 0.95903 1.01450 0.98235 1.21641 0.97802 0.83210 0.98924 1.47191 1.05981 1.05319 1.78098 1.15781 0.81332 0.83936 0.77989 1.90946 1.72856 1.24840 1.55965 1.42677 1.04197 1.12037 1.73984 1.17318 0.91888 0.89089 0.98379 1.20999 1.00392 0.94703 0.97548 1.20965 0.94139 0.97627 0.99536 1.20283 0.93676 0.97107 0.93047 1.18804 0.94350 0.91233 0.97894 1.20947 1.16237 1.02103 1.15652 0.90808 1.25009 0.95126 0.98490 0.94722 1.69904 1.21134 1.34885 1.27987 0.86803 0.77332 0.84527 0.80833 1.20176 1.21313 1.18916 1.20830 0.99128 0.93368 0.98944 1.20680 0.95343 0.99533 1.00981 1.21314 0.78820 1.02163 0.95900 0.90461 0.92203 0.92100 0.76041 0.90758 0.90652 0.89829 0.91149 0.90156 0.90683 0.76150 0.85608 0.86034 0.95836 0.95423 0.92647 0.85929 0.86764 0.90942 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 10.70 59.85 0.64 1.09 16 2 N -0.74 -4.55 5.62 -67.07 -0.38 -4.93 16 3 C 0.52 4.36 7.16 -10.98 -0.08 4.28 16 4 O -0.54 -6.38 15.98 5.57 0.09 -6.29 16 5 C -0.13 -0.85 2.68 -91.65 -0.25 -1.10 16 6 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.10 -0.63 4.46 -26.69 -0.12 -0.75 16 8 C -0.14 -0.67 6.07 -26.83 -0.16 -0.84 16 9 C 0.11 0.64 6.40 -3.93 -0.03 0.61 16 10 N -0.63 -5.59 2.98 -178.77 -0.53 -6.12 16 11 C 0.71 9.02 8.04 -86.91 -0.70 8.33 16 12 O -0.57 -9.33 13.45 5.29 0.07 -9.26 16 13 N -0.68 -8.30 5.24 -14.22 -0.07 -8.38 16 14 C 0.13 2.01 6.28 -83.69 -0.53 1.48 16 15 C -0.12 -2.09 8.66 -39.39 -0.34 -2.44 16 16 C -0.10 -2.06 9.69 -39.61 -0.38 -2.44 16 17 C -0.04 -0.85 5.07 -104.59 -0.53 -1.38 16 18 C 0.01 0.34 4.17 -29.03 -0.12 0.22 16 19 C -0.51 -14.44 9.65 -34.44 -0.33 -14.78 16 20 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 23 Si 0.88 21.35 27.47 -169.99 -4.67 16.69 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 27 C -0.10 -1.93 9.69 -39.61 -0.38 -2.31 16 28 C -0.14 -2.27 9.96 -39.39 -0.39 -2.66 16 29 C 0.14 1.11 5.56 -3.71 -0.02 1.09 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 1.79 8.37 -40.82 -0.34 1.44 16 34 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 35 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.39 5.58 -51.93 -0.29 0.10 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.40 3.54 6.31 -40.82 -0.26 3.29 16 41 H 0.13 2.27 6.40 -52.49 -0.34 1.93 16 42 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 43 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 44 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 47 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.10 0.85 6.63 -51.93 -0.34 0.51 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -35.89 394.89 -9.99 -45.88 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.41 Total: 2.89 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -3.82 Total: -9.72 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.21 Total: -46.15 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.16 Total: -15.54 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.89 -9.99 -45.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932576996.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.317 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds