Wall clock time and date at job start Sat Apr 11 2020 07:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99853 * 2 1 4 4 O 1.21269 * 120.00295 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99354 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.49794 * 299.93174 * 5 3 2 7 7 C 1.53038 * 109.51840 * 179.85366 * 5 3 2 8 8 C 1.53041 * 109.53924 * 178.66699 * 7 5 3 9 9 C 1.52769 * 109.38140 * 61.23414 * 8 7 5 10 10 N 1.46915 * 109.00916 * 305.59410 * 9 8 7 11 11 C 1.34776 * 120.63029 * 233.58070 * 10 9 8 12 12 O 1.21588 * 120.00411 * 184.89140 * 11 10 9 13 13 N 1.34783 * 119.99773 * 4.89472 * 11 10 9 14 14 C 1.39948 * 119.99670 * 185.22395 * 13 11 10 15 15 C 1.38867 * 120.06861 * 33.15655 * 14 13 11 16 16 C 1.38118 * 119.92513 * 179.97438 * 15 14 13 17 17 C 1.38279 * 120.07075 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.92779 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.47256 * 89.99892 * 18 17 16 20 20 H 1.08000 * 119.99889 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99763 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99523 * 180.27762 * 21 19 18 23 23 Si 1.86797 * 120.00474 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46982 * 89.99898 * 23 21 19 25 25 H 1.48493 * 109.47345 * 209.99995 * 23 21 19 26 26 H 1.48502 * 109.46751 * 329.99966 * 23 21 19 27 27 C 1.38277 * 120.14246 * 0.27246 * 17 16 15 28 28 C 1.38118 * 120.06556 * 359.44901 * 27 17 16 29 29 C 1.46921 * 118.74266 * 53.30890 * 10 9 8 30 30 H 1.09001 * 109.47559 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47379 * 300.00368 * 1 2 3 32 32 H 1.09007 * 109.46906 * 60.00460 * 1 2 3 33 33 H 0.97001 * 119.99450 * 179.97438 * 2 1 3 34 34 H 1.09003 * 109.46170 * 298.68248 * 7 5 3 35 35 H 1.08995 * 109.46737 * 58.64543 * 7 5 3 36 36 H 1.08994 * 109.50397 * 181.31246 * 8 7 5 37 37 H 1.09001 * 109.49741 * 301.38430 * 8 7 5 38 38 H 1.08997 * 109.50503 * 185.70420 * 9 8 7 39 39 H 1.09001 * 109.42999 * 65.43047 * 9 8 7 40 40 H 0.96999 * 119.99999 * 5.21973 * 13 11 10 41 41 H 1.07993 * 120.03793 * 359.97438 * 15 14 13 42 42 H 1.08004 * 119.96267 * 180.02562 * 16 15 14 43 43 H 1.08997 * 109.47708 * 329.99961 * 18 17 16 44 44 H 1.09003 * 109.47291 * 209.99997 * 18 17 16 45 45 H 0.96994 * 119.99588 * 179.72667 * 22 21 19 46 46 H 1.07997 * 119.96766 * 179.72868 * 27 17 16 47 47 H 1.08003 * 120.03426 * 180.25094 * 28 27 17 48 48 H 1.09000 * 109.58852 * 66.42918 * 29 10 9 49 49 H 1.09000 * 109.59175 * 186.85311 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2174 -0.0005 5 6 3.6459 1.1671 0.0006 6 1 4.0093 0.6546 0.8913 7 6 4.1574 2.6095 -0.0032 8 6 5.6874 2.6101 0.0309 9 6 6.2226 1.9035 -1.2133 10 7 5.6211 0.5659 -1.3000 11 6 6.3971 -0.5296 -1.4179 12 8 5.8870 -1.6217 -1.5781 13 7 7.7387 -0.4147 -1.3582 14 6 8.5477 -1.5330 -1.5894 15 6 8.1455 -2.5080 -2.4928 16 6 8.9465 -3.6102 -2.7190 17 6 10.1474 -3.7437 -2.0467 18 6 11.0186 -4.9479 -2.2956 19 6 11.9721 -4.6534 -3.4249 20 1 11.9492 -3.6906 -3.9138 21 6 12.8736 -5.6131 -3.8340 22 7 13.7094 -5.3541 -4.8159 23 14 12.9127 -7.2785 -2.9890 24 1 11.9864 -8.2081 -3.6840 25 1 14.2922 -7.8261 -3.0376 26 1 12.4906 -7.1254 -1.5735 27 6 10.5478 -2.7777 -1.1420 28 6 9.7541 -1.6703 -0.9155 29 6 4.1577 0.4447 -1.2496 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.9499 -0.8401 0.0004 34 1 3.8142 3.1141 -0.9064 35 1 3.7745 3.1329 0.8727 36 1 6.0505 3.6376 0.0517 37 1 6.0316 2.0844 0.9216 38 1 7.3065 1.8130 -1.1426 39 1 5.9592 2.4808 -2.0996 40 1 8.1434 0.4431 -1.1551 41 1 7.2075 -2.4044 -3.0178 42 1 8.6344 -4.3686 -3.4219 43 1 10.3932 -5.8002 -2.5612 44 1 11.5845 -5.1797 -1.3934 45 1 14.3463 -6.0278 -5.1010 46 1 11.4842 -2.8870 -0.6152 47 1 10.0692 -0.9141 -0.2117 48 1 3.7224 0.9006 -2.1389 49 1 3.8796 -0.6081 -1.2029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932576996.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:01 Heat of formation + Delta-G solvation = -60.734051 kcal Electronic energy + Delta-G solvation = -29508.034742 eV Core-core repulsion = 25433.865814 eV Total energy + Delta-G solvation = -4074.168928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.05773 -41.01314 -39.88820 -38.25756 -36.34829 -35.69467 -35.00291 -34.00256 -32.61219 -32.19862 -31.74078 -28.84344 -27.93165 -26.44260 -24.99561 -24.44549 -23.79666 -22.62376 -21.89893 -21.20917 -20.55768 -19.61569 -18.93599 -18.55723 -17.97430 -17.12653 -16.81970 -16.79090 -16.48291 -16.24043 -15.92634 -15.75749 -15.40327 -15.23121 -15.00812 -14.82775 -14.42252 -14.32967 -14.30575 -14.16160 -13.94211 -13.79527 -13.53668 -13.45423 -13.20000 -13.11621 -12.56223 -12.47775 -12.26375 -12.01832 -12.00092 -11.82128 -11.76290 -11.67852 -11.57980 -11.24539 -11.01532 -10.89338 -10.76060 -10.18611 -9.80950 -9.73171 -8.75124 -8.27140 -6.31638 0.50243 0.60621 1.31252 1.38929 1.39842 1.52120 1.60198 2.00653 2.24117 2.37660 2.74869 3.02249 3.07111 3.57283 3.63906 3.77011 3.98691 4.04510 4.07920 4.17716 4.21240 4.34908 4.41134 4.45538 4.48878 4.59879 4.61749 4.66171 4.71240 4.72022 4.74415 4.87794 4.92307 5.01708 5.08782 5.10391 5.14166 5.26391 5.33870 5.37117 5.40955 5.44924 5.46357 5.59089 5.67017 5.83666 6.04461 6.19800 6.32665 6.44334 6.74547 6.78517 7.15035 7.31531 7.40262 8.89125 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.001906 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.706576 B =14690.570219 C =15455.787509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.727 5.727 3 C 0.519 3.481 4 O -0.575 6.575 5 C -0.114 4.114 6 H 0.111 0.889 7 C -0.097 4.097 8 C -0.127 4.127 9 C 0.100 3.900 10 N -0.618 5.618 11 C 0.704 3.296 12 O -0.610 6.610 13 N -0.668 5.668 14 C 0.141 3.859 15 C -0.126 4.126 16 C -0.118 4.118 17 C -0.077 4.077 18 C 0.021 3.979 19 C -0.516 4.516 20 H 0.029 0.971 21 C 0.006 3.994 22 N -0.949 5.949 23 Si 0.950 3.050 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.244 1.244 27 C -0.110 4.110 28 C -0.132 4.132 29 C 0.143 3.857 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.415 0.585 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.420 0.580 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.025 0.975 44 H 0.034 0.966 45 H 0.267 0.733 46 H 0.131 0.869 47 H 0.158 0.842 48 H 0.075 0.925 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.685 17.082 14.166 31.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.379 5.379 3 C 0.305 3.695 4 O -0.455 6.455 5 C -0.136 4.136 6 H 0.129 0.871 7 C -0.135 4.135 8 C -0.165 4.165 9 C -0.022 4.022 10 N -0.354 5.354 11 C 0.406 3.594 12 O -0.489 6.489 13 N -0.319 5.319 14 C 0.046 3.954 15 C -0.146 4.146 16 C -0.136 4.136 17 C -0.078 4.078 18 C -0.016 4.016 19 C -0.554 4.554 20 H 0.048 0.952 21 C -0.191 4.191 22 N -0.590 5.590 23 Si 0.773 3.227 24 H -0.194 1.194 25 H -0.208 1.208 26 H -0.168 1.168 27 C -0.129 4.129 28 C -0.152 4.152 29 C 0.019 3.981 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.261 0.739 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.043 0.957 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.149 0.851 47 H 0.175 0.825 48 H 0.094 0.906 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.427 17.041 13.941 32.149 hybrid contribution 0.616 -0.867 -0.281 1.100 sum -22.811 16.175 13.660 31.121 Atomic orbital electron populations 1.21678 0.78791 1.04103 1.01592 1.45927 1.08609 1.08906 1.74426 1.20749 0.90260 0.83531 0.74976 1.90692 1.71048 1.32666 1.51074 1.21704 0.90533 1.00403 1.00974 0.87112 1.21314 0.95707 0.93115 1.03408 1.21858 0.94445 1.02568 0.97636 1.21940 0.98642 0.81573 1.00035 1.47219 1.06074 1.05523 1.76616 1.15938 0.81461 0.84236 0.77791 1.90928 1.73535 1.26762 1.57655 1.42496 1.03919 1.11858 1.73650 1.17379 0.92079 0.89218 0.96689 1.21004 1.00095 0.95038 0.98480 1.20953 0.94441 0.98465 0.99785 1.20157 0.94300 0.97567 0.95746 1.18647 0.93904 0.92864 0.96215 1.21178 1.17268 1.00342 1.16661 0.95234 1.25981 0.94604 1.03046 0.95431 1.70060 1.22330 1.36596 1.29969 0.85664 0.77606 0.78856 0.80592 1.19355 1.20816 1.16769 1.21009 0.99833 0.93669 0.98389 1.20987 0.94307 0.99223 1.00727 1.21341 0.78291 1.01913 0.96561 0.87675 0.92853 0.92964 0.74895 0.91495 0.91179 0.87750 0.90908 0.88591 0.89607 0.73855 0.85949 0.86846 0.95696 0.94733 0.92439 0.85130 0.82455 0.90648 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.70 127.77 1.37 2.16 16 2 N -0.73 -8.31 5.62 -484.52 -2.72 -11.03 16 3 C 0.52 8.29 7.16 87.66 0.63 8.92 16 4 O -0.58 -13.60 15.98 -2.99 -0.05 -13.64 16 5 C -0.11 -1.38 2.68 -11.46 -0.03 -1.41 16 6 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 7 C -0.10 -1.06 4.46 30.62 0.14 -0.92 16 8 C -0.13 -0.84 6.07 30.53 0.19 -0.65 16 9 C 0.10 0.85 6.40 86.22 0.55 1.41 16 10 N -0.62 -9.54 2.98 -837.77 -2.49 -12.03 16 11 C 0.70 16.49 8.04 179.05 1.44 17.93 16 12 O -0.61 -19.38 13.45 -3.99 -0.05 -19.43 16 13 N -0.67 -14.35 5.24 -317.17 -1.66 -16.01 16 14 C 0.14 4.18 6.28 38.14 0.24 4.42 16 15 C -0.13 -4.50 8.66 22.39 0.19 -4.30 16 16 C -0.12 -4.75 9.69 22.25 0.22 -4.54 16 17 C -0.08 -3.27 5.07 -19.85 -0.10 -3.37 16 18 C 0.02 1.01 4.17 29.10 0.12 1.13 16 19 C -0.52 -30.07 9.65 25.60 0.25 -29.82 16 20 H 0.03 1.92 7.98 -2.91 -0.02 1.89 16 21 C 0.01 0.36 5.47 84.65 0.46 0.83 16 22 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 23 Si 0.95 44.11 27.47 68.60 1.88 45.99 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 27 C -0.11 -3.95 9.69 22.25 0.22 -3.73 16 28 C -0.13 -3.75 9.96 22.39 0.22 -3.53 16 29 C 0.14 2.02 5.56 86.36 0.48 2.50 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.42 3.13 8.37 -92.71 -0.78 2.35 16 34 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 35 H 0.07 0.87 8.07 -2.39 -0.02 0.85 16 36 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 0.53 5.58 -2.39 -0.01 0.52 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.42 5.69 6.31 -92.71 -0.58 5.11 16 41 H 0.12 4.44 6.40 -2.91 -0.02 4.42 16 42 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.02 1.17 7.51 -2.39 -0.02 1.15 16 44 H 0.03 1.59 7.14 -2.39 -0.02 1.57 16 45 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 46 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 47 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.09 1.48 6.63 -2.39 -0.02 1.46 16 Total: -1.00 -80.96 394.89 1.34 -79.62 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.44 Total: 18.81 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 6.58 Total: -12.98 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -6.58 Total: -98.37 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.10 Total: -33.07 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -80.96 1.34 -79.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932576996.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.887 kcal (2) G-P(sol) polarization free energy of solvation -80.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds