Wall clock time and date at job start Sat Apr 11 2020 07:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35653 * 116.99648 * 2 1 4 4 C 1.38711 * 120.15405 * 0.23279 * 3 2 1 5 5 C 1.38052 * 120.09074 * 180.27716 * 4 3 2 6 6 C 1.38553 * 120.38412 * 359.74323 * 5 4 3 7 7 C 1.37786 * 120.30530 * 359.97438 * 6 5 4 8 8 C 1.39715 * 119.90248 * 0.02562 * 7 6 5 9 9 C 1.47542 * 120.18742 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99873 * 232.26939 * 9 8 7 11 11 N 1.34783 * 119.99541 * 52.26981 * 9 8 7 12 12 C 1.47074 * 120.87733 * 174.93691 * 11 9 8 13 13 C 1.53242 * 108.52228 * 231.20417 * 12 11 9 14 14 N 1.46899 * 109.33771 * 306.17246 * 13 12 11 15 15 C 1.46901 * 110.99358 * 187.25180 * 14 13 12 16 16 C 1.53949 * 113.74046 * 273.73610 * 15 14 13 17 17 N 1.47816 * 86.03744 * 222.08817 * 16 15 14 18 18 C 1.36936 * 134.45956 * 204.64740 * 17 16 15 19 19 H 1.07995 * 120.00347 * 179.87194 * 18 17 16 20 20 C 1.38811 * 119.99683 * 359.86563 * 18 17 16 21 21 N 1.31618 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47346 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47174 * 120.00050 * 22 20 18 25 25 H 1.48498 * 109.47211 * 239.99981 * 22 20 18 26 26 C 1.47582 * 91.05115 * 24.55197 * 17 16 15 27 27 C 1.46895 * 111.26895 * 63.10450 * 14 13 12 28 28 C 1.47080 * 120.88473 * 354.95836 * 11 9 8 29 29 H 1.09006 * 109.46559 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47082 * 299.99474 * 1 2 3 31 31 H 1.09004 * 109.47280 * 60.00063 * 1 2 3 32 32 H 1.08003 * 119.95353 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.81050 * 179.76881 * 5 4 3 34 34 H 1.08001 * 119.84550 * 180.02562 * 6 5 4 35 35 H 1.07996 * 120.04506 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.62799 * 111.49317 * 12 11 9 37 37 H 1.09007 * 109.63242 * 350.91577 * 12 11 9 38 38 H 1.09000 * 109.49612 * 186.20993 * 13 12 11 39 39 H 1.09001 * 109.48817 * 66.13296 * 13 12 11 40 40 H 1.09002 * 112.95012 * 45.33614 * 15 14 13 41 41 H 1.08996 * 113.76890 * 336.35526 * 16 15 14 42 42 H 1.08996 * 113.76251 * 107.75528 * 16 15 14 43 43 H 0.96999 * 120.00261 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.76986 * 221.15354 * 26 17 16 45 45 H 1.09003 * 113.87116 * 89.76171 * 26 17 16 46 46 H 1.08999 * 109.49451 * 56.85682 * 27 14 13 47 47 H 1.09004 * 109.49433 * 176.93415 * 27 14 13 48 48 H 1.08998 * 109.62672 * 248.50521 * 28 11 9 49 49 H 1.09001 * 109.62768 * 9.08411 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 0.0049 5 6 1.9204 3.6034 -0.0009 6 6 3.3035 3.6838 -0.0062 7 6 4.0667 2.5365 -0.0053 8 6 3.4440 1.2858 0.0005 9 6 4.2550 0.0533 0.0010 10 8 4.0478 -0.8110 -0.8286 11 7 5.2255 -0.1143 0.9211 12 6 5.9711 -1.3790 1.0100 13 6 5.9411 -1.8606 2.4644 14 7 6.4295 -0.7886 3.3420 15 6 6.5790 -1.2662 4.7231 16 6 5.2870 -1.1718 5.5549 17 7 6.1503 -0.6849 6.6515 18 6 6.0532 -0.6774 8.0174 19 1 6.8462 -0.2498 8.6129 20 6 4.9354 -1.2194 8.6367 21 7 3.9690 -1.7410 7.9111 22 14 4.8025 -1.2086 10.4999 23 1 6.0114 -0.5693 11.0787 24 1 3.5961 -0.4435 10.9057 25 1 4.6940 -2.6038 10.9966 26 6 7.1595 -0.2126 5.6839 27 6 5.5526 0.3885 3.2840 28 6 5.5668 0.9623 1.8632 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2137 2.3194 0.0083 33 1 1.3301 4.5078 -0.0009 34 1 3.7858 4.6501 -0.0103 35 1 5.1445 2.6041 -0.0099 36 1 7.0033 -1.2181 0.6987 37 1 5.5040 -2.1254 0.3673 38 1 6.5802 -2.7372 2.5706 39 1 4.9190 -2.1197 2.7406 40 1 7.0717 -2.2365 4.7863 41 1 4.5814 -0.4267 5.1874 42 1 4.8223 -2.1371 5.7556 43 1 3.1877 -2.1194 8.3438 44 1 8.1870 -0.4135 5.9873 45 1 7.0067 0.8148 5.3533 46 1 4.5360 0.0982 3.5490 47 1 5.9100 1.1432 3.9846 48 1 6.5601 1.3482 1.6340 49 1 4.8324 1.7640 1.7848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941649062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:19 Heat of formation + Delta-G solvation = 45.882052 kcal Electronic energy + Delta-G solvation = -31074.256246 eV Core-core repulsion = 27004.710540 eV Total energy + Delta-G solvation = -4069.545706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.90798 -39.72651 -38.64425 -37.52283 -36.48865 -33.76463 -32.19741 -31.58675 -30.70417 -30.41430 -28.09496 -27.51973 -26.29945 -24.84431 -24.04234 -23.73201 -22.48416 -22.29204 -21.18346 -19.63204 -18.68304 -17.96554 -17.26243 -16.83085 -16.56697 -16.18715 -15.88085 -15.33739 -15.27421 -15.05435 -14.88162 -14.74162 -14.60217 -14.19041 -13.83127 -13.74717 -13.59972 -13.00581 -12.80478 -12.45599 -12.28415 -12.21897 -12.06845 -11.84786 -11.77168 -11.54424 -11.41696 -11.36075 -11.15985 -10.97772 -10.80235 -10.69263 -10.53148 -10.14667 -9.88702 -9.82324 -9.49563 -9.19630 -8.80625 -8.65445 -8.46047 -7.79297 -6.85548 -5.77228 -3.09867 0.77269 1.12912 2.68306 2.97353 3.01769 3.37587 3.42892 3.45601 3.50066 4.15665 4.33335 4.49071 4.52520 4.63323 4.81405 4.92921 4.96132 5.00363 5.06338 5.11072 5.20731 5.23900 5.28949 5.34080 5.38620 5.43410 5.49320 5.51013 5.63482 5.70689 5.80008 5.88735 5.92139 5.98292 6.03459 6.12866 6.15855 6.22002 6.35021 6.40547 6.49707 6.58937 6.64190 7.02313 7.10182 7.21555 7.39481 7.42816 7.54027 7.64266 7.97363 8.19591 9.03480 9.70217 10.59236 11.39495 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.002883 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.674425 B = 9708.149424 C =10451.406341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.299 6.299 3 C 0.175 3.825 4 C -0.215 4.215 5 C -0.060 4.060 6 C -0.163 4.163 7 C -0.052 4.052 8 C -0.161 4.161 9 C 0.570 3.430 10 O -0.532 6.532 11 N -0.605 5.605 12 C 0.120 3.880 13 C 0.042 3.958 14 N -0.528 5.528 15 C 0.035 3.965 16 C 0.132 3.868 17 N -0.609 5.609 18 C -0.220 4.220 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.127 3.873 27 C 0.037 3.963 28 C 0.105 3.895 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.099 0.901 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.045 0.955 45 H 0.037 0.963 46 H 0.047 0.953 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 9.275 -19.123 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.210 6.210 3 C 0.128 3.872 4 C -0.233 4.233 5 C -0.078 4.078 6 C -0.182 4.182 7 C -0.070 4.070 8 C -0.165 4.165 9 C 0.358 3.642 10 O -0.409 6.409 11 N -0.339 5.339 12 C -0.002 4.002 13 C -0.087 4.087 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.006 3.994 17 N -0.336 5.336 18 C -0.348 4.348 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.000 4.000 27 C -0.092 4.092 28 C -0.018 4.018 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.117 0.883 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.617 8.657 -19.421 21.424 hybrid contribution -1.344 0.057 1.532 2.039 sum -3.961 8.714 -17.889 20.289 Atomic orbital electron populations 1.23145 0.78065 1.04455 1.01306 1.86193 1.21514 1.26094 1.87237 1.18935 0.90743 0.84855 0.92694 1.21224 1.00324 0.92041 1.09754 1.21096 0.94771 0.97026 0.94933 1.20995 0.93815 0.98441 1.04917 1.21172 1.00248 0.90378 0.95237 1.19199 0.90916 0.94438 1.11920 1.18000 0.79183 0.86104 0.80905 1.90768 1.68495 1.43821 1.37787 1.48077 1.36047 1.16092 1.33667 1.21735 0.96262 0.85451 0.96755 1.22411 0.99580 0.94686 0.92003 1.62036 1.47978 1.05896 1.09357 1.24287 0.99989 0.98957 0.84176 1.22940 0.92086 0.99114 0.85310 1.45826 1.18971 1.68422 1.00389 1.19060 1.03073 1.33196 0.79498 0.90139 1.24783 0.96563 1.01180 0.97962 1.69839 1.09178 1.44354 1.33509 0.86058 0.77450 0.77316 0.85025 1.20412 1.21797 1.21705 1.22649 0.94014 0.95194 0.88111 1.22573 0.96548 0.94398 0.95666 1.22184 1.01378 0.89704 0.88552 0.87911 0.92356 0.92505 0.84850 0.85338 0.85132 0.84588 0.90801 0.89019 0.89618 0.94167 0.88289 0.95200 0.91347 0.93771 0.93682 0.94592 0.93460 0.89004 0.90515 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.10 9.63 -24.54 -0.24 -4.34 16 3 C 0.18 2.25 6.68 -38.70 -0.26 1.99 16 4 C -0.21 -2.09 9.03 -39.47 -0.36 -2.45 16 5 C -0.06 -0.50 10.03 -39.53 -0.40 -0.89 16 6 C -0.16 -1.36 10.02 -39.63 -0.40 -1.76 16 7 C -0.05 -0.52 7.40 -39.20 -0.29 -0.81 16 8 C -0.16 -2.12 4.98 -104.84 -0.52 -2.64 16 9 C 0.57 8.76 6.91 -12.46 -0.09 8.67 16 10 O -0.53 -9.86 16.14 -0.58 -0.01 -9.86 16 11 N -0.61 -8.34 3.01 -173.69 -0.52 -8.86 16 12 C 0.12 1.60 6.58 -3.60 -0.02 1.57 16 13 C 0.04 0.60 5.61 -3.70 -0.02 0.58 16 14 N -0.53 -8.21 4.76 -228.22 -1.09 -9.29 16 15 C 0.03 0.65 4.03 -69.90 -0.28 0.37 16 16 C 0.13 3.11 6.81 -2.83 -0.02 3.09 16 17 N -0.61 -15.61 3.70 -177.84 -0.66 -16.27 16 18 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -27.57 11.39 55.49 0.63 -26.94 16 22 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 C 0.13 2.57 8.42 -2.96 -0.02 2.55 16 27 C 0.04 0.55 4.47 -3.71 -0.02 0.53 16 28 C 0.10 1.27 5.56 -3.60 -0.02 1.25 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 31 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 32 H 0.13 0.99 6.30 -52.48 -0.33 0.66 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 1.12 7.18 -52.49 -0.38 0.74 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.27 7.10 -51.93 -0.37 0.90 16 38 H 0.09 1.12 8.04 -51.93 -0.42 0.70 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.85 8.04 -51.93 -0.42 1.44 16 41 H 0.03 0.73 5.65 -51.93 -0.29 0.43 16 42 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.70 6.23 -51.93 -0.32 0.38 16 46 H 0.05 0.83 6.45 -51.93 -0.33 0.49 16 47 H 0.09 1.41 6.06 -51.93 -0.31 1.09 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.09 1.00 4.74 -51.93 -0.25 0.75 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -35.10 383.27 -10.20 -45.31 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.10 Total: 0.73 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -1.98 Total: 6.56 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -1.64 Total: -61.36 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.25 Total: -14.20 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.10 -10.20 -45.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941649062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.190 kcal (2) G-P(sol) polarization free energy of solvation -35.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds