Wall clock time and date at job start Sat Apr 11 2020 07:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35653 * 116.99648 * 2 1 4 4 C 1.38711 * 120.15405 * 0.23279 * 3 2 1 5 5 C 1.38052 * 120.09074 * 180.27716 * 4 3 2 6 6 C 1.38553 * 120.38412 * 359.74323 * 5 4 3 7 7 C 1.37786 * 120.30530 * 359.97438 * 6 5 4 8 8 C 1.39715 * 119.90248 * 0.02562 * 7 6 5 9 9 C 1.47542 * 120.18742 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99873 * 232.26939 * 9 8 7 11 11 N 1.34783 * 119.99541 * 52.26981 * 9 8 7 12 12 C 1.47074 * 120.87733 * 174.93691 * 11 9 8 13 13 C 1.53242 * 108.52228 * 231.20417 * 12 11 9 14 14 N 1.46899 * 109.33771 * 306.17246 * 13 12 11 15 15 C 1.46901 * 110.99358 * 187.25180 * 14 13 12 16 16 C 1.53949 * 113.74046 * 273.73610 * 15 14 13 17 17 N 1.47816 * 86.03744 * 222.08817 * 16 15 14 18 18 C 1.36936 * 134.45956 * 204.64740 * 17 16 15 19 19 H 1.07995 * 120.00347 * 179.87194 * 18 17 16 20 20 C 1.38811 * 119.99683 * 359.86563 * 18 17 16 21 21 N 1.31618 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47346 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47174 * 120.00050 * 22 20 18 25 25 H 1.48498 * 109.47211 * 239.99981 * 22 20 18 26 26 C 1.47582 * 91.05115 * 24.55197 * 17 16 15 27 27 C 1.46895 * 111.26895 * 63.10450 * 14 13 12 28 28 C 1.47080 * 120.88473 * 354.95836 * 11 9 8 29 29 H 1.09006 * 109.46559 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47082 * 299.99474 * 1 2 3 31 31 H 1.09004 * 109.47280 * 60.00063 * 1 2 3 32 32 H 1.08003 * 119.95353 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.81050 * 179.76881 * 5 4 3 34 34 H 1.08001 * 119.84550 * 180.02562 * 6 5 4 35 35 H 1.07996 * 120.04506 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.62799 * 111.49317 * 12 11 9 37 37 H 1.09007 * 109.63242 * 350.91577 * 12 11 9 38 38 H 1.09000 * 109.49612 * 186.20993 * 13 12 11 39 39 H 1.09001 * 109.48817 * 66.13296 * 13 12 11 40 40 H 1.09002 * 112.95012 * 45.33614 * 15 14 13 41 41 H 1.08996 * 113.76890 * 336.35526 * 16 15 14 42 42 H 1.08996 * 113.76251 * 107.75528 * 16 15 14 43 43 H 0.96999 * 120.00261 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.76986 * 221.15354 * 26 17 16 45 45 H 1.09003 * 113.87116 * 89.76171 * 26 17 16 46 46 H 1.08999 * 109.49451 * 56.85682 * 27 14 13 47 47 H 1.09004 * 109.49433 * 176.93415 * 27 14 13 48 48 H 1.08998 * 109.62672 * 248.50521 * 28 11 9 49 49 H 1.09001 * 109.62768 * 9.08411 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 0.0049 5 6 1.9204 3.6034 -0.0009 6 6 3.3035 3.6838 -0.0062 7 6 4.0667 2.5365 -0.0053 8 6 3.4440 1.2858 0.0005 9 6 4.2550 0.0533 0.0010 10 8 4.0478 -0.8110 -0.8286 11 7 5.2255 -0.1143 0.9211 12 6 5.9711 -1.3790 1.0100 13 6 5.9411 -1.8606 2.4644 14 7 6.4295 -0.7886 3.3420 15 6 6.5790 -1.2662 4.7231 16 6 5.2870 -1.1718 5.5549 17 7 6.1503 -0.6849 6.6515 18 6 6.0532 -0.6774 8.0174 19 1 6.8462 -0.2498 8.6129 20 6 4.9354 -1.2194 8.6367 21 7 3.9690 -1.7410 7.9111 22 14 4.8025 -1.2086 10.4999 23 1 6.0114 -0.5693 11.0787 24 1 3.5961 -0.4435 10.9057 25 1 4.6940 -2.6038 10.9966 26 6 7.1595 -0.2126 5.6839 27 6 5.5526 0.3885 3.2840 28 6 5.5668 0.9623 1.8632 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2137 2.3194 0.0083 33 1 1.3301 4.5078 -0.0009 34 1 3.7858 4.6501 -0.0103 35 1 5.1445 2.6041 -0.0099 36 1 7.0033 -1.2181 0.6987 37 1 5.5040 -2.1254 0.3673 38 1 6.5802 -2.7372 2.5706 39 1 4.9190 -2.1197 2.7406 40 1 7.0717 -2.2365 4.7863 41 1 4.5814 -0.4267 5.1874 42 1 4.8223 -2.1371 5.7556 43 1 3.1877 -2.1194 8.3438 44 1 8.1870 -0.4135 5.9873 45 1 7.0067 0.8148 5.3533 46 1 4.5360 0.0982 3.5490 47 1 5.9100 1.1432 3.9846 48 1 6.5601 1.3482 1.6340 49 1 4.8324 1.7640 1.7848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941649062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:18 Heat of formation + Delta-G solvation = 21.660821 kcal Electronic energy + Delta-G solvation = -31075.306558 eV Core-core repulsion = 27004.710540 eV Total energy + Delta-G solvation = -4070.596018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87898 -40.91552 -39.97881 -38.31941 -37.90403 -35.21857 -33.88759 -32.80809 -31.73311 -31.15054 -29.75475 -28.33825 -27.76048 -26.63111 -25.14336 -24.90110 -24.10742 -23.05902 -22.36437 -20.87936 -20.02656 -18.94856 -18.69902 -18.33355 -17.59592 -17.15663 -16.96803 -16.88865 -16.53897 -16.22889 -16.17033 -15.88089 -15.62348 -15.47131 -15.35750 -14.71867 -14.64184 -14.26187 -13.89380 -13.82137 -13.59646 -13.42270 -13.32666 -13.15803 -13.08130 -12.85151 -12.70321 -12.57248 -12.28063 -12.23239 -12.17309 -12.11008 -11.96851 -11.85966 -11.74257 -11.38683 -10.93649 -10.86756 -9.98920 -9.81309 -9.29811 -9.23578 -8.87227 -7.91943 -5.26252 -0.00525 0.39135 1.43844 1.44855 1.55467 1.59221 1.95628 2.28004 2.43918 2.70787 2.85454 3.28260 3.41565 3.48038 3.81389 3.84477 3.89594 3.94288 3.99305 4.13342 4.21300 4.23394 4.30761 4.33709 4.36443 4.41204 4.44659 4.48889 4.52494 4.64175 4.64867 4.70701 4.78220 4.85305 4.87541 4.93494 4.99117 5.06313 5.18433 5.21438 5.32220 5.36189 5.43252 5.47131 5.48645 5.76112 5.88871 6.03316 6.10418 6.28517 6.39508 6.88764 7.07216 7.59002 8.54287 9.24498 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.002883 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.674425 B = 9708.149424 C =10451.406341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.146 3.854 4 C -0.218 4.218 5 C -0.055 4.055 6 C -0.157 4.157 7 C -0.053 4.053 8 C -0.194 4.194 9 C 0.566 3.434 10 O -0.576 6.576 11 N -0.607 5.607 12 C 0.125 3.875 13 C 0.045 3.955 14 N -0.511 5.511 15 C 0.063 3.937 16 C 0.132 3.868 17 N -0.639 5.639 18 C -0.230 4.230 19 H 0.088 0.912 20 C -0.070 4.070 21 N -0.958 5.958 22 Si 0.979 3.021 23 H -0.261 1.261 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.132 3.868 27 C 0.039 3.961 28 C 0.114 3.886 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.012 0.988 40 H 0.104 0.896 41 H 0.019 0.981 42 H 0.026 0.974 43 H 0.246 0.754 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.014 0.986 47 H 0.094 0.906 48 H 0.106 0.894 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 12.126 -19.562 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.099 3.901 4 C -0.237 4.237 5 C -0.073 4.073 6 C -0.175 4.175 7 C -0.072 4.072 8 C -0.198 4.198 9 C 0.356 3.644 10 O -0.456 6.456 11 N -0.339 5.339 12 C 0.002 3.998 13 C -0.084 4.084 14 N -0.235 5.235 15 C -0.046 4.046 16 C 0.005 3.995 17 N -0.366 5.366 18 C -0.358 4.358 19 H 0.106 0.894 20 C -0.263 4.263 21 N -0.607 5.607 22 Si 0.807 3.193 23 H -0.185 1.185 24 H -0.221 1.221 25 H -0.220 1.220 26 C 0.007 3.993 27 C -0.090 4.090 28 C -0.008 4.008 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.171 0.829 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.030 0.970 40 H 0.122 0.878 41 H 0.037 0.963 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.033 0.967 47 H 0.112 0.888 48 H 0.124 0.876 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.239 11.544 -19.869 23.012 hybrid contribution -1.790 -0.769 1.621 2.534 sum -3.029 10.775 -18.248 21.407 Atomic orbital electron populations 1.23365 0.76214 1.05345 1.02649 1.86129 1.23746 1.27481 1.87745 1.19313 0.91131 0.85514 0.94117 1.21520 1.01313 0.91653 1.09204 1.21580 0.95293 0.97545 0.92860 1.21429 0.93936 0.99154 1.03001 1.21422 1.01332 0.89659 0.94761 1.19310 0.91160 0.94571 1.14740 1.18465 0.79022 0.86536 0.80380 1.90724 1.69637 1.45615 1.39666 1.48199 1.35715 1.16533 1.33460 1.21711 0.97354 0.85355 0.95334 1.22455 0.98299 0.95085 0.92522 1.62102 1.47911 1.06200 1.07266 1.23875 0.96343 0.98971 0.85435 1.22842 0.93656 0.96592 0.86410 1.46201 1.20785 1.69180 1.00453 1.19494 1.03033 1.32118 0.81193 0.89430 1.25653 0.96527 1.01546 1.02529 1.70052 1.09675 1.45821 1.35149 0.84994 0.77699 0.76925 0.79644 1.18520 1.22089 1.22027 1.22788 0.93611 0.96191 0.86701 1.22572 0.94467 0.94066 0.97852 1.22258 1.03375 0.89227 0.85951 0.87417 0.91366 0.90666 0.82947 0.81969 0.81821 0.82851 0.88433 0.89998 0.87844 0.96992 0.87842 0.96329 0.95503 0.94511 0.92134 0.92762 0.96727 0.88833 0.87617 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.34 -9.79 9.63 -84.06 -0.81 -10.60 16 3 C 0.15 3.79 6.68 22.84 0.15 3.94 16 4 C -0.22 -3.93 9.03 22.34 0.20 -3.73 16 5 C -0.05 -0.73 10.03 22.30 0.22 -0.50 16 6 C -0.16 -2.06 10.02 22.24 0.22 -1.84 16 7 C -0.05 -0.95 7.40 22.52 0.17 -0.79 16 8 C -0.19 -5.08 4.98 -20.01 -0.10 -5.18 16 9 C 0.57 17.78 6.91 86.70 0.60 18.38 16 10 O -0.58 -22.39 16.14 1.64 0.03 -22.36 16 11 N -0.61 -16.47 3.01 -821.69 -2.47 -18.94 16 12 C 0.12 3.24 6.58 86.35 0.57 3.81 16 13 C 0.05 1.29 5.61 86.38 0.48 1.78 16 14 N -0.51 -15.35 4.76 -875.95 -4.17 -19.51 16 15 C 0.06 2.34 4.03 46.67 0.19 2.53 16 16 C 0.13 6.44 6.81 86.44 0.59 7.03 16 17 N -0.64 -32.93 3.70 -716.56 -2.65 -35.58 16 18 C -0.23 -12.98 10.70 84.03 0.90 -12.08 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.96 -59.34 11.39 21.65 0.25 -59.09 16 22 Si 0.98 46.17 29.55 68.60 2.03 48.19 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 C 0.13 5.15 8.42 86.49 0.73 5.88 16 27 C 0.04 1.14 4.47 86.38 0.39 1.53 16 28 C 0.11 2.55 5.56 86.35 0.48 3.03 16 29 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.07 1.03 7.65 -2.39 -0.02 1.01 16 31 H 0.07 1.01 7.67 -2.39 -0.02 0.99 16 32 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 33 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.15 2.06 7.18 -2.91 -0.02 2.04 16 36 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 2.33 7.10 -2.38 -0.02 2.31 16 38 H 0.10 2.60 8.04 -2.39 -0.02 2.58 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.10 3.79 8.04 -2.39 -0.02 3.77 16 41 H 0.02 0.96 5.65 -2.39 -0.01 0.95 16 42 H 0.03 1.51 7.16 -2.39 -0.02 1.49 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.97 6.23 -2.39 -0.01 1.95 16 46 H 0.01 0.53 6.45 -2.39 -0.02 0.51 16 47 H 0.09 2.72 6.06 -2.39 -0.01 2.71 16 48 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.10 2.10 4.74 -2.39 -0.01 2.09 16 Total: -1.00 -80.44 383.27 0.53 -79.91 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.97 Total: 16.32 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 7.37 Total: 21.65 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -9.05 Total: -133.13 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.78 Total: -32.96 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -80.44 0.53 -79.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941649062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.573 kcal (2) G-P(sol) polarization free energy of solvation -80.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds