Wall clock time and date at job start Sat Apr 11 2020 07:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 120.00168 * 2 1 4 4 O 1.21552 * 120.00168 * 184.65425 * 3 2 1 5 5 C 1.47855 * 119.99703 * 4.65905 * 3 2 1 6 6 C 1.39707 * 120.07370 * 320.56162 * 5 3 2 7 7 C 1.38059 * 120.14533 * 179.97438 * 6 5 3 8 8 C 1.38101 * 120.29615 * 359.97438 * 7 6 5 9 9 C 1.39661 * 120.14565 * 0.27796 * 8 7 6 10 10 C 1.47854 * 120.07501 * 179.74821 * 9 8 7 11 11 N 1.34781 * 119.99873 * 359.97438 * 10 9 8 12 12 O 1.21553 * 120.00212 * 179.97438 * 10 9 8 13 13 C 1.39297 * 120.07560 * 140.54569 * 5 3 2 14 14 C 1.46503 * 120.00222 * 180.02562 * 2 1 3 15 15 H 1.08999 * 109.49338 * 179.97438 * 14 2 1 16 16 C 1.52571 * 109.49233 * 59.94534 * 14 2 1 17 17 C 1.47089 * 114.32390 * 155.02349 * 16 14 2 18 18 C 1.54859 * 110.32507 * 62.80591 * 17 16 14 19 19 N 1.44580 * 109.60079 * 288.73608 * 18 17 16 20 20 C 1.36936 * 118.63950 * 270.72210 * 19 18 17 21 21 H 1.07997 * 120.00574 * 30.14808 * 20 19 18 22 22 C 1.38818 * 119.99613 * 210.15326 * 20 19 18 23 23 N 1.31614 * 120.00391 * 11.21079 * 22 20 19 24 24 Si 1.86801 * 119.99467 * 191.20951 * 22 20 19 25 25 H 1.48499 * 109.47328 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47153 * 119.99756 * 24 22 20 27 27 H 1.48503 * 109.47207 * 239.99845 * 24 22 20 28 28 C 1.47603 * 122.71499 * 90.70203 * 19 18 17 29 29 C 1.50883 * 109.48402 * 300.04117 * 14 2 1 30 30 H 1.08998 * 109.47142 * 86.64545 * 1 2 3 31 31 H 1.09003 * 109.46813 * 206.64624 * 1 2 3 32 32 H 1.09000 * 109.46785 * 326.64312 * 1 2 3 33 33 H 1.08001 * 119.92597 * 359.95807 * 6 5 3 34 34 H 1.07998 * 119.84653 * 180.02562 * 7 6 5 35 35 H 1.07994 * 119.92278 * 179.97438 * 8 7 6 36 36 H 0.97002 * 119.99826 * 0.02562 * 11 10 9 37 37 H 0.97000 * 120.00223 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.14539 * 0.03746 * 13 5 3 39 39 H 1.08993 * 108.51318 * 276.27900 * 16 14 2 40 40 H 1.09005 * 108.50601 * 33.77282 * 16 14 2 41 41 H 1.09003 * 109.32821 * 183.06618 * 17 16 14 42 42 H 1.09001 * 109.32984 * 302.54482 * 17 16 14 43 43 H 1.09002 * 109.45066 * 48.77208 * 18 17 16 44 44 H 1.09000 * 109.45284 * 168.71835 * 18 17 16 45 45 H 0.96995 * 120.00000 * 180.02562 * 23 22 20 46 46 H 1.08999 * 108.94750 * 78.57539 * 28 19 18 47 47 H 1.09002 * 108.94191 * 197.29362 * 28 19 18 48 48 H 1.08995 * 109.37201 * 332.04136 * 29 14 2 49 49 H 1.09000 * 109.36675 * 91.66028 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3515 1.1690 -0.0854 5 6 1.4033 2.4456 0.1040 6 6 0.1937 2.6144 -0.5743 7 6 -0.4947 3.8072 -0.4778 8 6 0.0063 4.8406 0.2892 9 6 1.2170 4.6870 0.9682 10 6 1.7546 5.7964 1.7845 11 7 1.0764 6.9577 1.8735 12 8 2.8083 5.6611 2.3753 13 6 1.9146 3.4842 0.8788 14 6 2.1976 -1.2687 -0.0006 15 1 3.2693 -1.0699 -0.0009 16 6 1.8283 -2.0692 -1.2458 17 6 2.8545 -3.0325 -1.6731 18 6 3.0736 -4.1059 -0.5786 19 7 3.7534 -3.5141 0.5519 20 6 5.1227 -3.5148 0.5683 21 1 5.6739 -3.4771 -0.3596 22 6 5.8022 -3.5641 1.7778 23 7 5.1494 -3.8312 2.8891 24 14 7.6431 -3.2515 1.8281 25 1 8.1363 -2.9766 0.4546 26 1 7.9229 -2.0813 2.6985 27 1 8.3339 -4.4487 2.3711 28 6 3.0324 -2.9088 1.6888 29 6 1.8325 -2.0612 1.2304 30 1 -0.3633 0.0601 -1.0259 31 1 -0.3633 -0.9186 0.4609 32 1 -0.3633 0.8584 0.5651 33 1 -0.2036 1.8101 -1.1757 34 1 -1.4296 3.9323 -1.0039 35 1 -0.5370 5.7713 0.3601 36 1 0.2354 7.0655 1.4023 37 1 1.4293 7.6857 2.4087 38 1 2.8495 3.3589 1.4049 39 1 0.9049 -2.6128 -1.0466 40 1 1.6459 -1.3722 -2.0638 41 1 2.5326 -3.5175 -2.5947 42 1 3.7912 -2.5054 -1.8541 43 1 2.1090 -4.4987 -0.2571 44 1 3.6796 -4.9172 -0.9820 45 1 5.6242 -3.8653 3.7342 46 1 2.6749 -3.7029 2.3443 47 1 3.7205 -2.2731 2.2460 48 1 1.5470 -1.3770 2.0294 49 1 0.9929 -2.7176 1.0019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948556212.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:33 Heat of formation + Delta-G solvation = -10.418569 kcal Electronic energy + Delta-G solvation = -30922.974362 eV Core-core repulsion = 26850.987278 eV Total energy + Delta-G solvation = -4071.987085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.78820 -39.82109 -38.33702 -37.39166 -35.36469 -34.22697 -33.21758 -31.86837 -31.40821 -30.84163 -30.27202 -27.11432 -26.02114 -24.66328 -24.45796 -23.35667 -22.91121 -21.34423 -20.05336 -19.51132 -18.98287 -18.35072 -17.15073 -16.83848 -16.62942 -16.36953 -15.98627 -15.49743 -15.02501 -14.98531 -14.72455 -14.39024 -14.25434 -14.04916 -13.74779 -13.52586 -13.25653 -13.17936 -12.89791 -12.70795 -12.53032 -12.31732 -11.91518 -11.82070 -11.61314 -11.37049 -11.03940 -10.79158 -10.71656 -10.41641 -10.34941 -10.22719 -10.08449 -9.98327 -9.93427 -9.70183 -9.60171 -9.51879 -9.35089 -9.25710 -8.42053 -8.31990 -6.54064 -5.69659 -3.17843 0.37293 0.82109 2.38393 2.87862 3.06555 3.21204 3.46137 3.54364 3.56557 3.58375 4.29072 4.34834 4.44267 4.59221 4.67773 4.79081 5.04409 5.08476 5.18701 5.23649 5.32051 5.42760 5.54049 5.56537 5.57794 5.62546 5.82591 5.85160 5.87490 5.97996 6.00331 6.10610 6.22087 6.28094 6.35473 6.44897 6.51343 6.56306 6.65403 6.72270 6.75100 6.90848 6.93096 7.02472 7.11991 7.46753 7.57043 7.76117 7.89942 7.92105 8.32485 8.58289 9.33367 9.98502 10.44221 11.37768 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.003053 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.150958 B = 9169.985754 C =10728.797531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.604 5.604 3 C 0.551 3.449 4 O -0.519 6.519 5 C -0.126 4.126 6 C -0.068 4.068 7 C -0.134 4.134 8 C -0.070 4.070 9 C -0.147 4.147 10 C 0.564 3.436 11 N -0.852 5.852 12 O -0.531 6.531 13 C -0.006 4.006 14 C 0.149 3.851 15 H 0.117 0.883 16 C -0.104 4.104 17 C -0.146 4.146 18 C 0.158 3.842 19 N -0.591 5.591 20 C -0.257 4.257 21 H 0.064 0.936 22 C 0.008 3.992 23 N -0.906 5.906 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.184 3.816 29 C -0.148 4.148 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.400 0.600 37 H 0.406 0.594 38 H 0.147 0.853 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.031 0.969 44 H 0.046 0.954 45 H 0.252 0.748 46 H 0.029 0.971 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.693 17.279 -6.963 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.336 5.336 3 C 0.338 3.662 4 O -0.395 6.395 5 C -0.129 4.129 6 C -0.087 4.087 7 C -0.152 4.152 8 C -0.089 4.089 9 C -0.150 4.150 10 C 0.349 3.651 11 N -0.417 5.417 12 O -0.407 6.407 13 C -0.026 4.026 14 C 0.047 3.953 15 H 0.135 0.865 16 C -0.142 4.142 17 C -0.187 4.187 18 C 0.030 3.970 19 N -0.313 5.313 20 C -0.387 4.387 21 H 0.082 0.918 22 C -0.191 4.191 23 N -0.550 5.550 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.218 1.218 28 C 0.058 3.942 29 C -0.188 4.188 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.229 0.771 37 H 0.237 0.763 38 H 0.164 0.836 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.290 16.966 -6.505 25.781 hybrid contribution 0.386 0.638 0.056 0.748 sum -17.904 17.603 -6.449 25.923 Atomic orbital electron populations 1.22055 0.80682 1.03500 1.00975 1.48074 1.06583 1.06375 1.72571 1.18259 0.87223 0.83377 0.77350 1.90863 1.13298 1.86788 1.48511 1.20030 0.96320 0.95391 1.01183 1.21911 0.92547 0.97885 0.96337 1.21042 1.00915 0.93021 1.00266 1.21404 0.93969 0.98917 0.94629 1.19786 0.97313 0.95273 1.02666 1.18234 0.83880 0.82576 0.80364 1.43726 1.27092 1.16353 1.54530 1.90875 1.22373 1.81727 1.45769 1.21373 0.98391 0.89602 0.93217 1.20749 0.99004 0.80528 0.94985 0.86462 1.20611 0.99315 0.97677 0.96640 1.21460 0.98918 0.99049 0.99301 1.20699 0.95412 0.92809 0.88107 1.43636 1.02781 1.65381 1.19455 1.19212 0.81881 1.45219 0.92348 0.91829 1.25115 0.97826 0.99803 0.96339 1.70019 1.34783 1.52182 0.98028 0.86249 0.85594 0.77395 0.77721 1.20198 1.21523 1.21789 1.20925 0.90343 0.94202 0.88727 1.22456 1.01105 0.98705 0.96568 0.92687 0.90556 0.91053 0.84077 0.84665 0.85347 0.77079 0.76323 0.83553 0.93185 0.93723 0.93184 0.91906 0.95066 0.93558 0.93783 0.95279 0.90803 0.92455 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 8.22 59.85 0.49 1.21 16 2 N -0.60 -9.17 2.59 -176.52 -0.46 -9.63 16 3 C 0.55 9.36 7.35 -12.32 -0.09 9.27 16 4 O -0.52 -11.39 16.25 5.32 0.09 -11.30 16 5 C -0.13 -1.65 5.22 -105.02 -0.55 -2.19 16 6 C -0.07 -0.61 7.54 -39.10 -0.29 -0.90 16 7 C -0.13 -0.88 10.02 -39.70 -0.40 -1.27 16 8 C -0.07 -0.47 9.54 -39.10 -0.37 -0.85 16 9 C -0.15 -1.55 5.87 -105.02 -0.62 -2.17 16 10 C 0.56 6.27 8.05 -12.32 -0.10 6.17 16 11 N -0.85 -5.05 8.82 30.53 0.27 -4.79 16 12 O -0.53 -8.50 17.18 5.32 0.09 -8.41 16 13 C -0.01 -0.08 9.17 -38.78 -0.36 -0.44 16 14 C 0.15 2.71 2.13 -69.21 -0.15 2.57 16 15 H 0.12 2.74 6.25 -51.93 -0.32 2.42 16 16 C -0.10 -1.69 4.30 -29.79 -0.13 -1.81 16 17 C -0.15 -2.62 5.74 -28.59 -0.16 -2.79 16 18 C 0.16 3.27 5.66 -4.09 -0.02 3.25 16 19 N -0.59 -14.72 2.26 -172.12 -0.39 -15.11 16 20 C -0.26 -7.16 9.41 -15.06 -0.14 -7.31 16 21 H 0.06 1.78 7.85 -52.49 -0.41 1.36 16 22 C 0.01 0.22 4.96 -17.43 -0.09 0.13 16 23 N -0.91 -26.76 11.00 55.49 0.61 -26.15 16 24 Si 0.90 22.81 29.57 -169.99 -5.03 17.78 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 C 0.18 4.41 4.64 -2.97 -0.01 4.40 16 29 C -0.15 -2.78 4.38 -27.33 -0.12 -2.90 16 30 H 0.05 0.44 6.95 -51.93 -0.36 0.08 16 31 H 0.08 0.75 7.20 -51.93 -0.37 0.38 16 32 H 0.07 0.62 5.75 -51.93 -0.30 0.32 16 33 H 0.14 1.01 5.35 -52.49 -0.28 0.73 16 34 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 35 H 0.13 0.37 6.39 -52.49 -0.34 0.03 16 36 H 0.40 1.01 6.85 -40.82 -0.28 0.73 16 37 H 0.41 1.96 8.93 -40.82 -0.36 1.59 16 38 H 0.15 2.35 7.64 -52.49 -0.40 1.95 16 39 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 40 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.03 0.60 8.07 -51.93 -0.42 0.19 16 44 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.03 0.75 7.99 -51.93 -0.42 0.34 16 47 H 0.07 2.04 6.48 -51.93 -0.34 1.71 16 48 H 0.06 1.03 7.99 -51.93 -0.41 0.62 16 49 H 0.05 0.82 7.21 -51.93 -0.37 0.45 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -36.56 384.15 -9.14 -45.71 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.01 Total: 1.73 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -3.11 Total: 4.37 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.03 Total: -55.67 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.18 Total: -19.71 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.56 -9.14 -45.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948556212.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.287 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds