Wall clock time and date at job start Sat Apr 11 2020 07:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 120.00168 * 2 1 4 4 O 1.21552 * 120.00168 * 184.65425 * 3 2 1 5 5 C 1.47855 * 119.99703 * 4.65905 * 3 2 1 6 6 C 1.39707 * 120.07370 * 320.56162 * 5 3 2 7 7 C 1.38059 * 120.14533 * 179.97438 * 6 5 3 8 8 C 1.38101 * 120.29615 * 359.97438 * 7 6 5 9 9 C 1.39661 * 120.14565 * 0.27796 * 8 7 6 10 10 C 1.47854 * 120.07501 * 179.74821 * 9 8 7 11 11 N 1.34781 * 119.99873 * 359.97438 * 10 9 8 12 12 O 1.21553 * 120.00212 * 179.97438 * 10 9 8 13 13 C 1.39297 * 120.07560 * 140.54569 * 5 3 2 14 14 C 1.46503 * 120.00222 * 180.02562 * 2 1 3 15 15 H 1.08999 * 109.49338 * 179.97438 * 14 2 1 16 16 C 1.52571 * 109.49233 * 59.94534 * 14 2 1 17 17 C 1.47089 * 114.32390 * 155.02349 * 16 14 2 18 18 C 1.54859 * 110.32507 * 62.80591 * 17 16 14 19 19 N 1.44580 * 109.60079 * 288.73608 * 18 17 16 20 20 C 1.36936 * 118.63950 * 270.72210 * 19 18 17 21 21 H 1.07997 * 120.00574 * 30.14808 * 20 19 18 22 22 C 1.38818 * 119.99613 * 210.15326 * 20 19 18 23 23 N 1.31614 * 120.00391 * 11.21079 * 22 20 19 24 24 Si 1.86801 * 119.99467 * 191.20951 * 22 20 19 25 25 H 1.48499 * 109.47328 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47153 * 119.99756 * 24 22 20 27 27 H 1.48503 * 109.47207 * 239.99845 * 24 22 20 28 28 C 1.47603 * 122.71499 * 90.70203 * 19 18 17 29 29 C 1.50883 * 109.48402 * 300.04117 * 14 2 1 30 30 H 1.08998 * 109.47142 * 86.64545 * 1 2 3 31 31 H 1.09003 * 109.46813 * 206.64624 * 1 2 3 32 32 H 1.09000 * 109.46785 * 326.64312 * 1 2 3 33 33 H 1.08001 * 119.92597 * 359.95807 * 6 5 3 34 34 H 1.07998 * 119.84653 * 180.02562 * 7 6 5 35 35 H 1.07994 * 119.92278 * 179.97438 * 8 7 6 36 36 H 0.97002 * 119.99826 * 0.02562 * 11 10 9 37 37 H 0.97000 * 120.00223 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.14539 * 0.03746 * 13 5 3 39 39 H 1.08993 * 108.51318 * 276.27900 * 16 14 2 40 40 H 1.09005 * 108.50601 * 33.77282 * 16 14 2 41 41 H 1.09003 * 109.32821 * 183.06618 * 17 16 14 42 42 H 1.09001 * 109.32984 * 302.54482 * 17 16 14 43 43 H 1.09002 * 109.45066 * 48.77208 * 18 17 16 44 44 H 1.09000 * 109.45284 * 168.71835 * 18 17 16 45 45 H 0.96995 * 120.00000 * 180.02562 * 23 22 20 46 46 H 1.08999 * 108.94750 * 78.57539 * 28 19 18 47 47 H 1.09002 * 108.94191 * 197.29362 * 28 19 18 48 48 H 1.08995 * 109.37201 * 332.04136 * 29 14 2 49 49 H 1.09000 * 109.36675 * 91.66028 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3515 1.1690 -0.0854 5 6 1.4033 2.4456 0.1040 6 6 0.1937 2.6144 -0.5743 7 6 -0.4947 3.8072 -0.4778 8 6 0.0063 4.8406 0.2892 9 6 1.2170 4.6870 0.9682 10 6 1.7546 5.7964 1.7845 11 7 1.0764 6.9577 1.8735 12 8 2.8083 5.6611 2.3753 13 6 1.9146 3.4842 0.8788 14 6 2.1976 -1.2687 -0.0006 15 1 3.2693 -1.0699 -0.0009 16 6 1.8283 -2.0692 -1.2458 17 6 2.8545 -3.0325 -1.6731 18 6 3.0736 -4.1059 -0.5786 19 7 3.7534 -3.5141 0.5519 20 6 5.1227 -3.5148 0.5683 21 1 5.6739 -3.4771 -0.3596 22 6 5.8022 -3.5641 1.7778 23 7 5.1494 -3.8312 2.8891 24 14 7.6431 -3.2515 1.8281 25 1 8.1363 -2.9766 0.4546 26 1 7.9229 -2.0813 2.6985 27 1 8.3339 -4.4487 2.3711 28 6 3.0324 -2.9088 1.6888 29 6 1.8325 -2.0612 1.2304 30 1 -0.3633 0.0601 -1.0259 31 1 -0.3633 -0.9186 0.4609 32 1 -0.3633 0.8584 0.5651 33 1 -0.2036 1.8101 -1.1757 34 1 -1.4296 3.9323 -1.0039 35 1 -0.5370 5.7713 0.3601 36 1 0.2354 7.0655 1.4023 37 1 1.4293 7.6857 2.4087 38 1 2.8495 3.3589 1.4049 39 1 0.9049 -2.6128 -1.0466 40 1 1.6459 -1.3722 -2.0638 41 1 2.5326 -3.5175 -2.5947 42 1 3.7912 -2.5054 -1.8541 43 1 2.1090 -4.4987 -0.2571 44 1 3.6796 -4.9172 -0.9820 45 1 5.6242 -3.8653 3.7342 46 1 2.6749 -3.7029 2.3443 47 1 3.7205 -2.2731 2.2460 48 1 1.5470 -1.3770 2.0294 49 1 0.9929 -2.7176 1.0019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948556212.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:32 Heat of formation + Delta-G solvation = -37.993015 kcal Electronic energy + Delta-G solvation = -30924.170080 eV Core-core repulsion = 26850.987278 eV Total energy + Delta-G solvation = -4073.182802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81103 -40.87110 -39.53785 -38.67532 -36.87964 -35.11878 -34.81622 -33.16434 -32.63782 -32.16405 -31.58213 -28.21969 -27.71048 -26.12252 -25.26026 -25.12279 -24.15306 -22.17889 -21.28890 -21.11636 -20.35125 -19.20344 -18.60096 -17.97341 -17.92805 -17.19734 -17.16646 -16.93866 -16.49399 -16.12499 -15.91959 -15.76023 -15.43390 -15.25396 -14.96008 -14.90130 -14.71520 -14.28486 -14.20352 -13.93243 -13.68107 -13.66137 -13.22214 -13.08330 -13.02207 -12.82317 -12.66041 -12.48588 -12.34883 -12.10935 -12.07445 -11.82040 -11.51922 -11.39041 -11.36111 -11.33053 -10.90850 -10.81555 -10.49783 -10.11832 -10.04240 -9.64129 -8.61438 -7.88867 -5.38228 -0.35899 -0.00930 1.36565 1.41240 1.49360 1.50333 1.78445 2.00852 2.44880 2.46597 2.76742 3.25890 3.39155 3.65721 3.74054 3.81842 3.82731 3.99808 4.04834 4.11084 4.23852 4.34056 4.38658 4.42657 4.46631 4.56569 4.67019 4.69705 4.79805 4.84904 4.91861 4.95541 5.03306 5.11654 5.14068 5.19958 5.21474 5.23546 5.25293 5.36202 5.52234 5.56303 5.62679 5.68846 5.72979 5.75116 5.82014 6.36226 6.38085 6.40637 7.08811 7.17434 7.23248 7.94702 8.31915 9.15338 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.003053 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.150958 B = 9169.985754 C =10728.797531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.599 5.599 3 C 0.540 3.460 4 O -0.593 6.593 5 C -0.147 4.147 6 C -0.057 4.057 7 C -0.114 4.114 8 C -0.046 4.046 9 C -0.158 4.158 10 C 0.558 3.442 11 N -0.821 5.821 12 O -0.598 6.598 13 C -0.040 4.040 14 C 0.154 3.846 15 H 0.054 0.946 16 C -0.099 4.099 17 C -0.134 4.134 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.259 4.259 21 H 0.057 0.943 22 C -0.047 4.047 23 N -0.932 5.932 24 Si 0.955 3.045 25 H -0.270 1.270 26 H -0.299 1.299 27 H -0.282 1.282 28 C 0.194 3.806 29 C -0.130 4.130 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.168 0.832 34 H 0.189 0.811 35 H 0.180 0.820 36 H 0.421 0.579 37 H 0.414 0.586 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.026 0.974 43 H 0.055 0.945 44 H 0.037 0.963 45 H 0.247 0.753 46 H 0.006 0.994 47 H 0.022 0.978 48 H 0.059 0.941 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.525 18.959 -9.799 33.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.329 5.329 3 C 0.330 3.670 4 O -0.474 6.474 5 C -0.150 4.150 6 C -0.075 4.075 7 C -0.131 4.131 8 C -0.064 4.064 9 C -0.161 4.161 10 C 0.344 3.656 11 N -0.386 5.386 12 O -0.479 6.479 13 C -0.060 4.060 14 C 0.051 3.949 15 H 0.072 0.928 16 C -0.137 4.137 17 C -0.175 4.175 18 C 0.025 3.975 19 N -0.327 5.327 20 C -0.390 4.390 21 H 0.075 0.925 22 C -0.242 4.242 23 N -0.579 5.579 24 Si 0.784 3.216 25 H -0.195 1.195 26 H -0.226 1.226 27 H -0.209 1.209 28 C 0.068 3.932 29 C -0.170 4.170 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.185 0.815 34 H 0.207 0.793 35 H 0.198 0.802 36 H 0.254 0.746 37 H 0.246 0.754 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.024 0.976 47 H 0.041 0.959 48 H 0.077 0.923 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.244 18.669 -9.389 32.007 hybrid contribution 2.084 0.196 0.894 2.276 sum -22.159 18.865 -8.495 30.316 Atomic orbital electron populations 1.22491 0.76780 1.04961 1.03829 1.48073 1.08807 1.04607 1.71419 1.19049 0.86702 0.85233 0.76014 1.90814 1.16686 1.87933 1.51975 1.19708 0.98391 0.93103 1.03768 1.22213 0.90368 0.99939 0.94978 1.21644 1.01766 0.91008 0.98665 1.21969 0.91590 1.01034 0.91793 1.19798 0.98885 0.93709 1.03757 1.18506 0.83325 0.83906 0.79858 1.43467 1.27072 1.14660 1.53428 1.90848 1.25412 1.83016 1.48646 1.21110 0.97785 0.92102 0.95039 1.20360 0.96255 0.82226 0.96042 0.92793 1.20537 0.99790 0.97552 0.95783 1.21320 0.98122 0.98324 0.99714 1.20922 0.95787 0.93417 0.87355 1.43818 1.02114 1.66169 1.20632 1.19433 0.83814 1.43758 0.92025 0.92536 1.25767 1.01396 1.00724 0.96310 1.70155 1.35798 1.53767 0.98131 0.85390 0.81722 0.76912 0.77624 1.19491 1.22610 1.20870 1.20616 0.91031 0.93228 0.88291 1.22213 0.99324 0.98456 0.96970 0.88937 0.89569 0.89265 0.81498 0.79341 0.80242 0.74554 0.75381 0.88755 0.89682 0.91871 0.89387 0.95514 0.92717 0.94429 0.94346 0.97573 0.95932 0.92282 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.97 8.22 127.77 1.05 2.02 16 2 N -0.60 -17.87 2.59 -830.66 -2.16 -20.02 16 3 C 0.54 19.46 7.35 86.79 0.64 20.10 16 4 O -0.59 -29.16 16.25 -3.88 -0.06 -29.22 16 5 C -0.15 -3.85 5.22 -20.12 -0.11 -3.96 16 6 C -0.06 -0.77 7.54 22.58 0.17 -0.60 16 7 C -0.11 -0.72 10.02 22.19 0.22 -0.50 16 8 C -0.05 -0.38 9.54 22.58 0.22 -0.16 16 9 C -0.16 -3.20 5.87 -20.12 -0.12 -3.32 16 10 C 0.56 12.46 8.05 86.79 0.70 13.16 16 11 N -0.82 -7.75 8.82 -175.59 -1.55 -9.30 16 12 O -0.60 -20.91 17.18 -3.88 -0.07 -20.98 16 13 C -0.04 -1.19 9.17 22.79 0.21 -0.98 16 14 C 0.15 5.70 2.13 44.16 0.09 5.79 16 15 H 0.05 2.73 6.25 -2.39 -0.01 2.72 16 16 C -0.10 -2.94 4.30 28.61 0.12 -2.81 16 17 C -0.13 -4.64 5.74 29.39 0.17 -4.47 16 18 C 0.15 6.22 5.66 87.37 0.49 6.72 16 19 N -0.60 -31.42 2.26 -698.48 -1.58 -33.00 16 20 C -0.26 -15.29 9.41 84.04 0.79 -14.50 16 21 H 0.06 3.34 7.85 -2.91 -0.02 3.31 16 22 C -0.05 -2.81 4.96 84.86 0.42 -2.39 16 23 N -0.93 -58.44 11.00 21.65 0.24 -58.20 16 24 Si 0.95 49.57 29.57 68.60 2.03 51.59 16 25 H -0.27 -13.57 7.11 99.48 0.71 -12.87 16 26 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 27 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 28 C 0.19 9.86 4.64 86.47 0.40 10.26 16 29 C -0.13 -4.88 4.38 30.21 0.13 -4.75 16 30 H 0.09 0.87 6.95 -2.39 -0.02 0.85 16 31 H 0.09 1.27 7.20 -2.39 -0.02 1.25 16 32 H 0.09 1.16 5.75 -2.39 -0.01 1.14 16 33 H 0.17 1.37 5.35 -2.91 -0.02 1.35 16 34 H 0.19 -0.57 8.06 -2.91 -0.02 -0.59 16 35 H 0.18 -0.37 6.39 -2.91 -0.02 -0.39 16 36 H 0.42 0.15 6.85 -92.71 -0.64 -0.48 16 37 H 0.41 3.19 8.93 -92.71 -0.83 2.37 16 38 H 0.09 3.67 7.64 -2.91 -0.02 3.65 16 39 H 0.08 2.01 7.36 -2.39 -0.02 1.99 16 40 H 0.06 1.69 8.04 -2.38 -0.02 1.67 16 41 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.05 1.99 8.07 -2.39 -0.02 1.97 16 44 H 0.04 1.59 7.99 -2.39 -0.02 1.57 16 45 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 46 H 0.01 0.34 7.99 -2.39 -0.02 0.32 16 47 H 0.02 1.34 6.48 -2.39 -0.02 1.33 16 48 H 0.06 2.17 7.99 -2.39 -0.02 2.15 16 49 H 0.08 2.60 7.21 -2.39 -0.02 2.58 16 Total: -1.00 -96.46 384.15 1.99 -94.47 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -0.46 Total: 5.05 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 5.61 Total: 19.61 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -5.05 Total: -120.52 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.13 Total: -50.20 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.03 Total: 51.59 kcal Total: -96.46 1.99 -94.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948556212.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.475 kcal (2) G-P(sol) polarization free energy of solvation -96.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds