Wall clock time and date at job start Sat Apr 11 2020 07:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34778 * 120.00267 * 2 1 4 4 O 1.21553 * 119.99750 * 186.95908 * 3 2 1 5 5 C 1.47860 * 119.99767 * 6.95721 * 3 2 1 6 6 C 1.39700 * 120.07456 * 20.38757 * 5 3 2 7 7 C 1.38055 * 120.14410 * 179.74135 * 6 5 3 8 8 C 1.38094 * 120.29716 * 0.51005 * 7 6 5 9 9 C 1.39665 * 120.14602 * 359.76373 * 8 7 6 10 10 C 1.47859 * 120.07814 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99659 * 0.03061 * 10 9 8 12 12 O 1.21549 * 120.00066 * 180.02562 * 10 9 8 13 13 C 1.39297 * 120.06961 * 200.66150 * 5 3 2 14 14 C 1.46508 * 119.99944 * 179.97438 * 2 1 3 15 15 C 1.52997 * 109.46833 * 59.99768 * 14 2 1 16 16 C 1.52999 * 109.47134 * 179.97438 * 15 14 2 17 17 C 1.53006 * 109.46952 * 60.00121 * 16 15 14 18 18 N 1.46505 * 109.46826 * 180.02562 * 17 16 15 19 19 C 1.36935 * 119.99622 * 205.00101 * 18 17 16 20 20 H 1.08010 * 120.00126 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00045 * 180.02562 * 19 18 17 22 22 N 1.31613 * 119.99810 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00146 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46917 * 59.99699 * 23 21 19 25 25 H 1.48494 * 109.47160 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.46986 * 300.00214 * 23 21 19 27 27 C 1.52997 * 109.47103 * 299.99898 * 17 16 15 28 28 C 1.52997 * 109.47170 * 300.00052 * 14 2 1 29 29 H 1.09003 * 109.47441 * 266.38879 * 1 2 3 30 30 H 1.08998 * 109.47348 * 26.38523 * 1 2 3 31 31 H 1.08997 * 109.47466 * 146.38578 * 1 2 3 32 32 H 1.07997 * 119.92803 * 359.97438 * 6 5 3 33 33 H 1.08002 * 119.85304 * 180.25340 * 7 6 5 34 34 H 1.08006 * 119.93445 * 179.74381 * 8 7 6 35 35 H 0.96992 * 119.99967 * 359.97438 * 11 10 9 36 36 H 0.97006 * 119.99720 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.14787 * 359.97438 * 13 5 3 38 38 H 1.08997 * 109.46809 * 180.02562 * 14 2 1 39 39 H 1.09008 * 109.47152 * 60.00188 * 15 14 2 40 40 H 1.08996 * 109.47560 * 300.00542 * 15 14 2 41 41 H 1.08999 * 109.47884 * 180.02562 * 16 15 14 42 42 H 1.09006 * 109.47282 * 300.00222 * 16 15 14 43 43 H 1.08996 * 109.46570 * 60.00085 * 17 16 15 44 44 H 0.96995 * 119.99922 * 25.00482 * 18 17 16 45 45 H 0.97007 * 120.00243 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.47024 * 179.97438 * 27 17 16 47 47 H 1.08997 * 109.47657 * 300.00355 * 27 17 16 48 48 H 1.09006 * 109.47143 * 59.99670 * 28 14 2 49 49 H 1.09004 * 109.47367 * 300.00390 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3477 1.1709 -0.1275 5 6 1.4077 2.4430 0.1551 6 6 0.1280 2.4528 0.7152 7 6 -0.5538 3.6438 0.8656 8 6 0.0190 4.8312 0.4545 9 6 1.2955 4.8349 -0.1123 10 6 1.9071 6.1070 -0.5525 11 7 1.2330 7.2649 -0.4064 12 8 3.0179 6.1086 -1.0460 13 6 1.9913 3.6370 -0.2622 14 6 2.1974 -1.2688 0.0006 15 6 1.8277 -2.0716 -1.2483 16 6 2.5932 -3.3964 -1.2481 17 6 2.2241 -4.1984 0.0016 18 7 2.9575 -5.4666 0.0020 19 6 2.4593 -6.5453 0.6827 20 1 1.5259 -6.4610 1.2196 21 6 3.1544 -7.7469 0.6837 22 7 4.2926 -7.8492 0.0307 23 14 2.4751 -9.2182 1.6128 24 1 1.1413 -9.5757 1.0666 25 1 3.3989 -10.3705 1.4585 26 1 2.3454 -8.8776 3.0524 27 6 2.5938 -3.3956 1.2504 28 6 1.8278 -2.0705 1.2501 29 1 -0.3634 -0.0647 1.0256 30 1 -0.3634 0.9206 -0.4567 31 1 -0.3634 -0.8558 -0.5689 32 1 -0.3275 1.5272 1.0347 33 1 -1.5413 3.6465 1.3030 34 1 -0.5213 5.7591 0.5712 35 1 0.3465 7.2636 -0.0129 36 1 1.6344 8.0996 -0.6949 37 1 2.9788 3.6344 -0.6995 38 1 3.2691 -1.0696 0.0009 39 1 2.0911 -1.5004 -2.1386 40 1 0.7561 -2.2707 -1.2483 41 1 2.3302 -3.9682 -2.1380 42 1 3.6648 -3.1969 -1.2484 43 1 1.1526 -4.3979 0.0018 44 1 3.7960 -5.5422 -0.4797 45 1 4.7782 -8.6889 0.0311 46 1 2.3305 -3.9668 2.1406 47 1 3.6654 -3.1960 1.2501 48 1 0.7561 -2.2697 1.2502 49 1 2.0911 -1.4986 2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963562820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:39 Heat of formation + Delta-G solvation = -21.137485 kcal Electronic energy + Delta-G solvation = -29708.535576 eV Core-core repulsion = 25636.083685 eV Total energy + Delta-G solvation = -4072.451892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.07685 -40.05431 -38.56628 -37.71702 -35.68191 -34.38158 -33.57567 -31.80701 -31.56302 -30.52808 -30.41725 -27.93150 -27.16249 -24.58102 -24.38291 -23.23949 -22.26529 -21.61798 -20.94889 -19.77857 -19.34955 -18.52539 -17.33808 -17.20240 -16.92144 -16.52141 -16.39875 -15.62930 -15.24182 -15.15159 -14.77310 -14.73761 -14.23065 -14.18294 -13.88194 -13.72510 -13.57899 -13.52718 -13.03434 -12.99656 -12.71334 -12.57203 -12.10295 -11.93957 -11.80933 -11.50536 -11.40998 -10.87891 -10.75125 -10.72507 -10.66762 -10.55993 -10.22207 -10.20494 -10.14862 -10.00174 -9.71290 -9.56460 -9.52842 -9.45883 -8.86535 -8.69106 -6.93171 -5.74084 -3.02762 0.17231 0.61752 2.17243 2.69300 2.79390 3.01423 3.43923 3.44464 3.48815 3.50195 4.06319 4.19080 4.28283 4.49395 4.56955 4.60263 4.83139 4.86138 4.92274 4.96268 5.10630 5.17761 5.28943 5.35384 5.39550 5.51683 5.56416 5.64283 5.68947 5.71705 5.77672 5.79267 5.84051 5.88799 6.04479 6.17278 6.25758 6.27984 6.29619 6.30541 6.43145 6.58279 6.63830 6.70737 6.79131 6.98844 7.13728 7.21592 7.70779 7.75270 7.98472 8.44572 9.55359 10.14427 10.48922 11.48516 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.001852 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.479571 B =15114.320949 C =15587.889912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.603 5.603 3 C 0.555 3.445 4 O -0.529 6.529 5 C -0.136 4.136 6 C -0.082 4.082 7 C -0.136 4.136 8 C -0.065 4.065 9 C -0.150 4.150 10 C 0.564 3.436 11 N -0.852 5.852 12 O -0.533 6.533 13 C -0.001 4.001 14 C 0.140 3.860 15 C -0.119 4.119 16 C -0.122 4.122 17 C 0.178 3.822 18 N -0.725 5.725 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.287 1.287 27 C -0.133 4.133 28 C -0.121 4.121 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.400 0.600 36 H 0.406 0.594 37 H 0.149 0.851 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.598 29.941 0.747 33.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.335 5.335 3 C 0.344 3.656 4 O -0.406 6.406 5 C -0.139 4.139 6 C -0.100 4.100 7 C -0.154 4.154 8 C -0.084 4.084 9 C -0.154 4.154 10 C 0.350 3.650 11 N -0.416 5.416 12 O -0.409 6.409 13 C -0.021 4.021 14 C 0.038 3.962 15 C -0.158 4.158 16 C -0.160 4.160 17 C 0.068 3.932 18 N -0.365 5.365 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.174 4.174 28 C -0.160 4.160 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.176 0.824 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.230 0.770 36 H 0.237 0.763 37 H 0.166 0.834 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.307 29.585 0.461 32.866 hybrid contribution -0.533 -0.461 0.584 0.916 sum -14.840 29.124 1.045 32.704 Atomic orbital electron populations 1.22427 0.80356 1.03875 1.01612 1.47840 1.06802 1.06023 1.72800 1.18252 0.87070 0.83378 0.76924 1.90813 1.13796 1.86850 1.49096 1.19961 0.95676 0.93904 1.04357 1.22605 0.92936 1.00218 0.94212 1.21112 1.00992 0.91811 1.01479 1.21476 0.93467 0.98822 0.94652 1.19807 0.96149 0.93656 1.05738 1.18219 0.84936 0.84060 0.77798 1.43730 1.21880 1.09342 1.66654 1.90866 1.19318 1.87005 1.43742 1.21403 0.99429 0.89395 0.91870 1.21319 0.97971 0.81095 0.95844 1.21806 1.00697 0.96508 0.96766 1.21774 1.00132 0.94374 0.99767 1.20221 0.95686 0.86244 0.91021 1.42428 1.26023 1.06583 1.61514 1.19189 1.04089 0.89539 1.24138 0.91304 1.24742 0.97279 0.97982 1.01019 1.69651 1.15990 1.25869 1.46589 0.86290 0.77822 0.82618 0.79574 1.21335 1.21729 1.21346 1.22252 0.99684 0.93752 1.01676 1.21879 1.00793 0.97083 0.96247 0.91768 0.89918 0.90305 0.82448 0.84518 0.85262 0.77026 0.76251 0.83379 0.87948 0.92087 0.91787 0.91459 0.91953 0.93652 0.78266 0.93492 0.91646 0.92400 0.92062 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 7.72 59.84 0.46 0.89 16 2 N -0.60 -6.84 2.76 -175.05 -0.48 -7.32 16 3 C 0.56 7.35 7.52 -12.32 -0.09 7.26 16 4 O -0.53 -9.19 15.88 5.32 0.08 -9.10 16 5 C -0.14 -1.39 5.56 -105.02 -0.58 -1.98 16 6 C -0.08 -0.54 7.61 -39.10 -0.30 -0.84 16 7 C -0.14 -0.64 10.02 -39.70 -0.40 -1.04 16 8 C -0.07 -0.32 9.54 -39.10 -0.37 -0.69 16 9 C -0.15 -1.26 5.87 -105.02 -0.62 -1.87 16 10 C 0.56 5.12 8.05 -12.32 -0.10 5.02 16 11 N -0.85 -3.57 8.82 30.53 0.27 -3.31 16 12 O -0.53 -7.33 17.18 5.32 0.09 -7.24 16 13 C 0.00 -0.01 9.13 -38.78 -0.35 -0.37 16 14 C 0.14 1.88 2.52 -67.93 -0.17 1.71 16 15 C -0.12 -1.57 5.17 -26.73 -0.14 -1.71 16 16 C -0.12 -2.00 5.39 -26.73 -0.14 -2.14 16 17 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 18 N -0.73 -18.05 5.12 -53.42 -0.27 -18.32 16 19 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 20 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 23 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.13 -2.32 5.50 -26.71 -0.15 -2.47 16 28 C -0.12 -1.65 5.21 -26.71 -0.14 -1.78 16 29 H 0.06 0.35 6.99 -51.93 -0.36 -0.01 16 30 H 0.08 0.46 5.26 -51.93 -0.27 0.19 16 31 H 0.08 0.54 6.44 -51.93 -0.33 0.21 16 32 H 0.16 0.77 4.02 -52.49 -0.21 0.56 16 33 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 34 H 0.13 0.16 6.39 -52.48 -0.34 -0.17 16 35 H 0.40 0.37 6.85 -40.82 -0.28 0.09 16 36 H 0.41 1.28 8.93 -40.82 -0.36 0.92 16 37 H 0.15 1.94 7.37 -52.49 -0.39 1.56 16 38 H 0.10 1.65 6.92 -51.93 -0.36 1.29 16 39 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 40 H 0.06 0.75 6.68 -51.93 -0.35 0.41 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 44 H 0.38 10.25 7.80 -40.82 -0.32 9.93 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -36.69 389.15 -9.17 -45.86 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.90 Total: 7.79 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.53 Total: -3.99 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.24 Total: -56.51 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.18 Total: -16.34 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.69 -9.17 -45.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963562820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.719 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds