Wall clock time and date at job start Sat Apr 11 2020 07:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34782 * 120.00137 * 2 1 4 4 O 1.21528 * 119.99944 * 186.94771 * 3 2 1 5 5 C 1.48033 * 119.99690 * 6.95225 * 3 2 1 6 6 C 1.39557 * 119.99789 * 20.40418 * 5 3 2 7 7 C 1.37830 * 119.99442 * 179.71662 * 6 5 3 8 8 C 1.39554 * 119.99655 * 0.55356 * 7 6 5 9 9 C 1.48038 * 119.99237 * 179.69799 * 8 7 6 10 10 N 1.34778 * 120.00499 * 0.02562 * 9 8 7 11 11 O 1.21533 * 119.99643 * 180.02562 * 9 8 7 12 12 C 1.39549 * 120.00520 * 359.72010 * 8 7 6 13 13 C 1.37817 * 120.00095 * 359.97438 * 12 8 7 14 14 C 1.46500 * 120.00300 * 179.97438 * 2 1 3 15 15 C 1.52999 * 109.46975 * 59.99866 * 14 2 1 16 16 C 1.52998 * 109.47165 * 179.97438 * 15 14 2 17 17 C 1.53003 * 109.47116 * 60.00445 * 16 15 14 18 18 N 1.46500 * 109.47607 * 179.97438 * 17 16 15 19 19 C 1.36939 * 119.99966 * 275.00280 * 18 17 16 20 20 H 1.08005 * 119.99748 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99885 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00067 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99895 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47331 * 59.99701 * 23 21 19 25 25 H 1.48501 * 109.47068 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46771 * 299.99629 * 23 21 19 27 27 C 1.52997 * 109.47054 * 300.00017 * 17 16 15 28 28 C 1.52999 * 109.47245 * 59.99628 * 27 17 16 29 29 H 1.09002 * 109.46915 * 266.40945 * 1 2 3 30 30 H 1.08998 * 109.46915 * 26.41005 * 1 2 3 31 31 H 1.09001 * 109.46958 * 146.40919 * 1 2 3 32 32 H 1.07991 * 120.00467 * 359.97438 * 6 5 3 33 33 H 1.08002 * 119.99540 * 180.27055 * 7 6 5 34 34 H 0.96998 * 119.99698 * 0.02562 * 10 9 8 35 35 H 0.97000 * 120.00164 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.99827 * 179.97438 * 12 8 7 37 37 H 1.07999 * 120.00267 * 179.97438 * 13 12 8 38 38 H 1.08996 * 109.47591 * 180.02562 * 14 2 1 39 39 H 1.08996 * 109.47113 * 300.00479 * 15 14 2 40 40 H 1.09004 * 109.46928 * 60.00440 * 15 14 2 41 41 H 1.08996 * 109.47597 * 300.00306 * 16 15 14 42 42 H 1.09002 * 109.47119 * 180.02562 * 16 15 14 43 43 H 1.09004 * 109.47242 * 59.99580 * 17 16 15 44 44 H 0.97001 * 120.00019 * 94.99578 * 18 17 16 45 45 H 0.96996 * 119.99991 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.46739 * 299.99870 * 27 17 16 47 47 H 1.08996 * 109.47487 * 179.97438 * 27 17 16 48 48 H 1.09002 * 109.47192 * 180.02562 * 28 27 17 49 49 H 1.08996 * 109.47243 * 60.00255 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3475 1.1711 -0.1273 5 6 1.4069 2.4445 0.1552 6 6 0.1286 2.4525 0.7152 7 6 -0.5505 3.6425 0.8650 8 6 0.0354 4.8378 0.4461 9 6 -0.6969 6.1150 0.6009 10 7 -1.9291 6.1235 1.1468 11 8 -0.1868 7.1559 0.2357 12 6 1.3113 4.8290 -0.1191 13 6 1.9930 3.6400 -0.2631 14 6 2.1976 -1.2687 0.0006 15 6 1.8279 -2.0715 -1.2483 16 6 2.5935 -3.3962 -1.2481 17 6 2.2244 -4.1983 0.0015 18 7 2.9569 -5.4671 0.0015 19 6 2.4577 -6.5459 -0.6783 20 1 1.5237 -6.4615 -1.2141 21 6 3.1520 -7.7479 -0.6787 22 7 4.2904 -7.8505 -0.0261 23 14 2.4707 -9.2197 -1.6055 24 1 2.3394 -8.8807 -3.0453 25 1 3.3939 -10.3726 -1.4510 26 1 1.1373 -9.5758 -1.0572 27 6 2.5940 -3.3955 1.2504 28 6 1.8285 -2.0708 1.2501 29 1 -0.3633 -0.0644 1.0257 30 1 -0.3633 0.9204 -0.4571 31 1 -0.3633 -0.8561 -0.5686 32 1 -0.3267 1.5270 1.0349 33 1 -1.5380 3.6492 1.3023 34 1 -2.3360 5.2928 1.4386 35 1 -2.4087 6.9605 1.2486 36 1 1.7645 5.7540 -0.4436 37 1 2.9803 3.6331 -0.7009 38 1 3.2692 -1.0696 0.0009 39 1 0.7563 -2.2707 -1.2482 40 1 2.0913 -1.5003 -2.1385 41 1 3.6650 -3.1967 -1.2484 42 1 2.3305 -3.9680 -2.1380 43 1 1.1528 -4.3979 0.0018 44 1 3.7956 -5.5429 0.4830 45 1 4.7757 -8.6903 -0.0267 46 1 3.6656 -3.1960 1.2501 47 1 2.3307 -3.9667 2.1406 48 1 2.0921 -1.4986 2.1397 49 1 0.7570 -2.2703 1.2504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964361186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:42 Heat of formation + Delta-G solvation = -21.665777 kcal Electronic energy + Delta-G solvation = -29599.163883 eV Core-core repulsion = 25526.689083 eV Total energy + Delta-G solvation = -4072.474800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.10553 -40.14299 -38.60894 -37.71741 -35.73298 -34.42045 -33.65155 -31.90886 -31.42929 -30.57228 -30.45358 -27.92593 -27.27141 -25.25002 -23.63268 -23.07605 -22.31162 -21.80831 -20.94812 -19.87322 -19.39022 -18.62621 -17.63796 -17.26540 -16.95876 -16.71188 -15.87627 -15.47932 -15.38323 -15.22533 -14.98526 -14.70121 -14.38925 -14.08306 -13.88572 -13.82100 -13.58745 -13.39379 -13.05680 -12.93527 -12.84954 -12.60209 -12.23149 -12.09441 -11.84149 -11.46185 -11.34986 -10.90703 -10.80359 -10.74349 -10.69730 -10.63284 -10.28453 -10.23142 -10.14781 -10.04128 -9.75670 -9.59692 -9.54862 -9.43980 -8.88298 -8.73585 -6.95239 -5.76048 -3.04797 0.00395 0.81405 2.05068 2.69412 2.77943 2.91006 3.41144 3.43162 3.47661 3.48864 4.02436 4.17909 4.29148 4.39824 4.58462 4.69884 4.81536 4.84661 4.90447 4.93142 5.13410 5.14925 5.26080 5.32854 5.42077 5.48743 5.52100 5.61434 5.63566 5.71486 5.74764 5.80905 5.82352 5.85068 6.01523 6.17432 6.21224 6.24262 6.25214 6.27195 6.40491 6.54060 6.60854 6.68077 6.73463 6.96069 7.11014 7.16763 7.67487 7.69096 7.91709 8.42664 9.53487 10.12240 10.46634 11.46543 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.033595 B = 0.001779 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.258976 B =15735.226479 C =16019.129067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.601 5.601 3 C 0.552 3.448 4 O -0.529 6.529 5 C -0.101 4.101 6 C -0.117 4.117 7 C -0.097 4.097 8 C -0.121 4.121 9 C 0.563 3.437 10 N -0.850 5.850 11 O -0.536 6.536 12 C -0.067 4.067 13 C -0.069 4.069 14 C 0.139 3.861 15 C -0.122 4.122 16 C -0.133 4.133 17 C 0.178 3.822 18 N -0.725 5.725 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C -0.122 4.122 28 C -0.118 4.118 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.132 0.868 34 H 0.402 0.598 35 H 0.406 0.594 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.983 26.148 3.629 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.333 5.333 3 C 0.341 3.659 4 O -0.406 6.406 5 C -0.105 4.105 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.124 4.124 9 C 0.348 3.652 10 N -0.414 5.414 11 O -0.414 6.414 12 C -0.086 4.086 13 C -0.088 4.088 14 C 0.037 3.963 15 C -0.161 4.161 16 C -0.174 4.174 17 C 0.068 3.932 18 N -0.365 5.365 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.160 4.160 28 C -0.157 4.157 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.177 0.823 33 H 0.150 0.850 34 H 0.232 0.768 35 H 0.238 0.762 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.951 26.547 3.183 30.158 hybrid contribution -0.629 -0.986 -0.176 1.183 sum -14.580 25.561 3.008 29.580 Atomic orbital electron populations 1.22451 0.80265 1.04039 1.01629 1.47858 1.06879 1.06043 1.72530 1.18379 0.87100 0.83482 0.76983 1.90796 1.13830 1.86886 1.49107 1.20218 0.95032 0.94089 1.01122 1.22296 0.93689 0.99744 0.97783 1.21249 0.99945 0.91483 0.98850 1.20071 0.96252 0.93007 1.03059 1.18349 0.81352 0.88709 0.76758 1.43755 1.18462 1.13779 1.65412 1.90834 1.67715 1.33549 1.49260 1.21270 0.92818 0.98794 0.95715 1.21315 1.00210 0.90454 0.96779 1.21324 0.97934 0.81114 0.95885 1.21865 1.00737 0.97113 0.96351 1.22244 0.99691 0.93759 1.01679 1.20220 0.95707 0.86247 0.91002 1.42425 1.26015 1.06531 1.61570 1.19187 1.04073 0.89501 1.24221 0.91299 1.24741 0.97275 0.97977 1.01002 1.69649 1.15993 1.25881 1.46578 0.86290 0.77833 0.82607 0.79578 1.21328 1.21719 1.21331 1.21772 1.00090 0.94364 0.99817 1.21809 1.00816 0.96488 0.96592 0.91754 0.89771 0.90286 0.82331 0.85010 0.76837 0.76244 0.83910 0.83898 0.87964 0.92035 0.92456 0.92401 0.91642 0.93657 0.78277 0.93484 0.91972 0.91431 0.92194 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 7.72 59.85 0.46 0.85 16 2 N -0.60 -6.41 2.76 -174.98 -0.48 -6.89 16 3 C 0.55 6.77 7.52 -12.24 -0.09 6.68 16 4 O -0.53 -8.54 15.87 5.34 0.08 -8.46 16 5 C -0.10 -0.95 5.57 -104.90 -0.58 -1.54 16 6 C -0.12 -0.74 7.60 -39.24 -0.30 -1.04 16 7 C -0.10 -0.49 9.53 -39.24 -0.37 -0.86 16 8 C -0.12 -0.88 5.88 -104.90 -0.62 -1.50 16 9 C 0.56 4.42 8.05 -12.24 -0.10 4.32 16 10 N -0.85 -3.00 8.82 30.57 0.27 -2.73 16 11 O -0.54 -6.43 17.17 5.34 0.09 -6.34 16 12 C -0.07 -0.57 9.58 -39.25 -0.38 -0.94 16 13 C -0.07 -0.64 9.57 -39.24 -0.38 -1.01 16 14 C 0.14 1.79 2.52 -67.93 -0.17 1.62 16 15 C -0.12 -1.63 5.17 -26.73 -0.14 -1.77 16 16 C -0.13 -2.29 5.50 -26.73 -0.15 -2.44 16 17 C 0.18 3.36 2.77 -67.93 -0.19 3.17 16 18 N -0.73 -17.80 5.12 -53.42 -0.27 -18.07 16 19 C -0.24 -6.51 9.93 -15.06 -0.15 -6.65 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C -0.12 -1.92 5.39 -26.73 -0.14 -2.06 16 28 C -0.12 -1.46 5.21 -26.73 -0.14 -1.60 16 29 H 0.06 0.31 6.99 -51.93 -0.36 -0.05 16 30 H 0.08 0.44 5.26 -51.93 -0.27 0.16 16 31 H 0.08 0.52 6.44 -51.93 -0.33 0.19 16 32 H 0.16 0.69 4.02 -52.49 -0.21 0.48 16 33 H 0.13 0.18 6.39 -52.49 -0.34 -0.15 16 34 H 0.40 0.24 6.85 -40.82 -0.28 -0.04 16 35 H 0.41 1.00 8.93 -40.82 -0.36 0.64 16 36 H 0.14 1.17 7.64 -52.49 -0.40 0.77 16 37 H 0.14 1.34 7.78 -52.49 -0.41 0.93 16 38 H 0.10 1.57 6.92 -51.93 -0.36 1.21 16 39 H 0.06 0.74 6.68 -51.93 -0.35 0.39 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 44 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -35.71 389.14 -9.17 -44.88 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.89 Total: 7.15 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -3.53 Total: -5.26 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.24 Total: -55.00 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.18 Total: -14.80 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.71 -9.17 -44.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964361186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.211 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds