Wall clock time and date at job start Sat Apr 11 2020 07:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34782 * 120.00137 * 2 1 4 4 O 1.21528 * 119.99944 * 186.94771 * 3 2 1 5 5 C 1.48033 * 119.99690 * 6.95225 * 3 2 1 6 6 C 1.39557 * 119.99789 * 20.40418 * 5 3 2 7 7 C 1.37830 * 119.99442 * 179.71662 * 6 5 3 8 8 C 1.39554 * 119.99655 * 0.55356 * 7 6 5 9 9 C 1.48038 * 119.99237 * 179.69799 * 8 7 6 10 10 N 1.34778 * 120.00499 * 0.02562 * 9 8 7 11 11 O 1.21533 * 119.99643 * 180.02562 * 9 8 7 12 12 C 1.39549 * 120.00520 * 359.72010 * 8 7 6 13 13 C 1.37817 * 120.00095 * 359.97438 * 12 8 7 14 14 C 1.46500 * 120.00300 * 179.97438 * 2 1 3 15 15 C 1.52999 * 109.46975 * 59.99866 * 14 2 1 16 16 C 1.52998 * 109.47165 * 179.97438 * 15 14 2 17 17 C 1.53003 * 109.47116 * 60.00445 * 16 15 14 18 18 N 1.46500 * 109.47607 * 179.97438 * 17 16 15 19 19 C 1.36939 * 119.99966 * 275.00280 * 18 17 16 20 20 H 1.08005 * 119.99748 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99885 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00067 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99895 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47331 * 59.99701 * 23 21 19 25 25 H 1.48501 * 109.47068 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46771 * 299.99629 * 23 21 19 27 27 C 1.52997 * 109.47054 * 300.00017 * 17 16 15 28 28 C 1.52999 * 109.47245 * 59.99628 * 27 17 16 29 29 H 1.09002 * 109.46915 * 266.40945 * 1 2 3 30 30 H 1.08998 * 109.46915 * 26.41005 * 1 2 3 31 31 H 1.09001 * 109.46958 * 146.40919 * 1 2 3 32 32 H 1.07991 * 120.00467 * 359.97438 * 6 5 3 33 33 H 1.08002 * 119.99540 * 180.27055 * 7 6 5 34 34 H 0.96998 * 119.99698 * 0.02562 * 10 9 8 35 35 H 0.97000 * 120.00164 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.99827 * 179.97438 * 12 8 7 37 37 H 1.07999 * 120.00267 * 179.97438 * 13 12 8 38 38 H 1.08996 * 109.47591 * 180.02562 * 14 2 1 39 39 H 1.08996 * 109.47113 * 300.00479 * 15 14 2 40 40 H 1.09004 * 109.46928 * 60.00440 * 15 14 2 41 41 H 1.08996 * 109.47597 * 300.00306 * 16 15 14 42 42 H 1.09002 * 109.47119 * 180.02562 * 16 15 14 43 43 H 1.09004 * 109.47242 * 59.99580 * 17 16 15 44 44 H 0.97001 * 120.00019 * 94.99578 * 18 17 16 45 45 H 0.96996 * 119.99991 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.46739 * 299.99870 * 27 17 16 47 47 H 1.08996 * 109.47487 * 179.97438 * 27 17 16 48 48 H 1.09002 * 109.47192 * 180.02562 * 28 27 17 49 49 H 1.08996 * 109.47243 * 60.00255 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3475 1.1711 -0.1273 5 6 1.4069 2.4445 0.1552 6 6 0.1286 2.4525 0.7152 7 6 -0.5505 3.6425 0.8650 8 6 0.0354 4.8378 0.4461 9 6 -0.6969 6.1150 0.6009 10 7 -1.9291 6.1235 1.1468 11 8 -0.1868 7.1559 0.2357 12 6 1.3113 4.8290 -0.1191 13 6 1.9930 3.6400 -0.2631 14 6 2.1976 -1.2687 0.0006 15 6 1.8279 -2.0715 -1.2483 16 6 2.5935 -3.3962 -1.2481 17 6 2.2244 -4.1983 0.0015 18 7 2.9569 -5.4671 0.0015 19 6 2.4577 -6.5459 -0.6783 20 1 1.5237 -6.4615 -1.2141 21 6 3.1520 -7.7479 -0.6787 22 7 4.2904 -7.8505 -0.0261 23 14 2.4707 -9.2197 -1.6055 24 1 2.3394 -8.8807 -3.0453 25 1 3.3939 -10.3726 -1.4510 26 1 1.1373 -9.5758 -1.0572 27 6 2.5940 -3.3955 1.2504 28 6 1.8285 -2.0708 1.2501 29 1 -0.3633 -0.0644 1.0257 30 1 -0.3633 0.9204 -0.4571 31 1 -0.3633 -0.8561 -0.5686 32 1 -0.3267 1.5270 1.0349 33 1 -1.5380 3.6492 1.3023 34 1 -2.3360 5.2928 1.4386 35 1 -2.4087 6.9605 1.2486 36 1 1.7645 5.7540 -0.4436 37 1 2.9803 3.6331 -0.7009 38 1 3.2692 -1.0696 0.0009 39 1 0.7563 -2.2707 -1.2482 40 1 2.0913 -1.5003 -2.1385 41 1 3.6650 -3.1967 -1.2484 42 1 2.3305 -3.9680 -2.1380 43 1 1.1528 -4.3979 0.0018 44 1 3.7956 -5.5429 0.4830 45 1 4.7757 -8.6903 -0.0267 46 1 3.6656 -3.1960 1.2501 47 1 2.3307 -3.9667 2.1406 48 1 2.0921 -1.4986 2.1397 49 1 0.7570 -2.2703 1.2504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964361186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:41 Heat of formation + Delta-G solvation = -47.743919 kcal Electronic energy + Delta-G solvation = -29600.294716 eV Core-core repulsion = 25526.689083 eV Total energy + Delta-G solvation = -4073.605633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.86336 -40.86577 -39.59591 -38.65211 -36.91328 -35.26059 -34.92718 -33.11207 -31.99586 -31.91635 -31.69158 -29.19792 -28.10359 -26.21608 -25.24304 -23.70383 -23.55830 -22.81715 -21.77874 -20.87096 -20.54959 -19.14187 -19.08034 -18.31617 -17.84570 -17.54744 -16.91022 -16.58238 -16.16012 -16.05681 -15.86027 -15.61185 -15.40299 -15.27950 -15.16272 -14.91923 -14.59081 -14.45590 -14.07302 -14.03417 -13.64844 -13.59695 -13.34350 -13.13827 -13.07003 -12.81460 -12.75378 -12.40345 -12.23870 -12.05742 -12.01990 -11.90713 -11.62711 -11.44344 -11.32361 -11.13718 -10.92456 -10.80091 -10.75285 -10.14961 -10.02230 -9.62840 -8.97649 -7.91190 -5.19473 -0.62412 0.27620 1.35943 1.48151 1.51141 1.57061 1.84908 2.04326 2.45817 2.58447 2.79751 3.35540 3.41647 3.69522 3.75165 3.83379 3.85242 3.89250 3.94473 4.16837 4.23504 4.26925 4.33669 4.38361 4.40852 4.53754 4.56912 4.61241 4.61793 4.73656 4.81561 4.88254 4.95065 5.03088 5.07552 5.13942 5.14210 5.20779 5.21063 5.26028 5.29047 5.49558 5.55499 5.56754 5.65395 5.68523 5.85480 6.30995 6.32883 6.39490 7.03841 7.25497 7.36387 8.14538 8.36403 9.32371 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.033595 B = 0.001779 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.258976 B =15735.226479 C =16019.129067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.595 5.595 3 C 0.547 3.453 4 O -0.584 6.584 5 C -0.116 4.116 6 C -0.104 4.104 7 C -0.076 4.076 8 C -0.124 4.124 9 C 0.560 3.440 10 N -0.824 5.824 11 O -0.588 6.588 12 C -0.079 4.079 13 C -0.083 4.083 14 C 0.145 3.855 15 C -0.108 4.108 16 C -0.124 4.124 17 C 0.174 3.826 18 N -0.740 5.740 19 C -0.235 4.235 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.971 3.029 24 H -0.280 1.280 25 H -0.299 1.299 26 H -0.275 1.275 27 C -0.114 4.114 28 C -0.104 4.104 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.189 0.811 33 H 0.181 0.819 34 H 0.420 0.580 35 H 0.414 0.586 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.748 26.866 4.546 33.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.325 5.325 3 C 0.337 3.663 4 O -0.465 6.465 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.094 4.094 8 C -0.127 4.127 9 C 0.346 3.654 10 N -0.389 5.389 11 O -0.469 6.469 12 C -0.098 4.098 13 C -0.102 4.102 14 C 0.041 3.959 15 C -0.147 4.147 16 C -0.165 4.165 17 C 0.066 3.934 18 N -0.379 5.379 19 C -0.367 4.367 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.801 3.199 24 H -0.206 1.206 25 H -0.226 1.226 26 H -0.201 1.201 27 C -0.153 4.153 28 C -0.143 4.143 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.206 0.794 33 H 0.198 0.802 34 H 0.253 0.747 35 H 0.247 0.753 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.842 27.283 4.112 33.411 hybrid contribution 0.778 -1.123 -0.447 1.438 sum -18.064 26.160 3.665 32.002 Atomic orbital electron populations 1.22883 0.77184 1.05508 1.04079 1.47835 1.08633 1.04502 1.71576 1.18877 0.86663 0.84710 0.76082 1.90770 1.16320 1.87667 1.51722 1.20077 0.96506 0.92241 1.03073 1.22600 0.91988 1.01425 0.96158 1.21700 1.01342 0.89639 0.96757 1.20191 0.95702 0.93984 1.02856 1.18469 0.82282 0.88072 0.76612 1.43569 1.16812 1.15239 1.63271 1.90819 1.69160 1.35153 1.51790 1.21216 0.93853 0.98056 0.96669 1.21201 0.99967 0.91177 0.97861 1.21016 0.96697 0.82305 0.95837 1.21720 1.01532 0.94698 0.96755 1.22042 0.98970 0.95569 0.99933 1.20480 0.95323 0.84623 0.92973 1.42695 1.25935 1.08136 1.61165 1.19612 1.03888 0.90137 1.23064 0.90369 1.25564 0.97929 1.00966 1.02769 1.69821 1.17607 1.26097 1.48811 0.85240 0.77267 0.78935 0.78505 1.20617 1.22572 1.20100 1.21655 0.99773 0.95893 0.98006 1.21691 1.01756 0.94143 0.96663 0.88515 0.87891 0.89529 0.79405 0.80165 0.74706 0.75309 0.84881 0.85614 0.91324 0.89335 0.92593 0.94627 0.93506 0.92895 0.79907 0.94245 0.93590 0.91683 0.90974 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 7.72 127.77 0.99 1.34 16 2 N -0.60 -11.21 2.76 -825.79 -2.28 -13.49 16 3 C 0.55 13.07 7.52 86.84 0.65 13.72 16 4 O -0.58 -19.83 15.87 -3.80 -0.06 -19.89 16 5 C -0.12 -2.00 5.57 -20.04 -0.11 -2.11 16 6 C -0.10 -0.85 7.60 22.49 0.17 -0.68 16 7 C -0.08 -0.40 9.53 22.49 0.21 -0.19 16 8 C -0.12 -1.53 5.88 -20.04 -0.12 -1.65 16 9 C 0.56 7.66 8.05 86.84 0.70 8.36 16 10 N -0.82 -2.79 8.82 -175.47 -1.55 -4.34 16 11 O -0.59 -13.96 17.17 -3.82 -0.07 -14.02 16 12 C -0.08 -1.35 9.58 22.49 0.22 -1.13 16 13 C -0.08 -1.59 9.57 22.49 0.22 -1.37 16 14 C 0.14 3.52 2.52 44.99 0.11 3.64 16 15 C -0.11 -2.74 5.17 30.59 0.16 -2.58 16 16 C -0.12 -4.31 5.50 30.59 0.17 -4.14 16 17 C 0.17 6.48 2.77 44.99 0.12 6.61 16 18 N -0.74 -36.94 5.12 -322.93 -1.65 -38.59 16 19 C -0.24 -12.85 9.93 84.03 0.83 -12.01 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 22 N -0.97 -59.98 13.06 21.65 0.28 -59.69 16 23 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 C -0.11 -3.54 5.39 30.59 0.16 -3.38 16 28 C -0.10 -2.30 5.21 30.59 0.16 -2.14 16 29 H 0.10 0.25 6.99 -2.39 -0.02 0.23 16 30 H 0.10 0.51 5.26 -2.39 -0.01 0.49 16 31 H 0.09 0.65 6.44 -2.39 -0.02 0.64 16 32 H 0.19 0.41 4.02 -2.92 -0.01 0.40 16 33 H 0.18 -0.83 6.39 -2.91 -0.02 -0.84 16 34 H 0.42 -1.72 6.85 -92.71 -0.64 -2.36 16 35 H 0.41 0.72 8.93 -92.71 -0.83 -0.11 16 36 H 0.13 2.42 7.64 -2.91 -0.02 2.40 16 37 H 0.13 2.71 7.78 -2.91 -0.02 2.68 16 38 H 0.07 2.18 6.92 -2.39 -0.02 2.16 16 39 H 0.09 1.80 6.68 -2.39 -0.02 1.78 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.91 8.08 -2.38 -0.02 1.89 16 44 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 45 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 46 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.09 1.58 7.67 -2.39 -0.02 1.56 16 Total: -1.00 -83.82 389.14 0.65 -83.17 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -1.17 Total: 20.80 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.12 Total: -1.85 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -5.20 Total: -116.12 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.13 Total: -33.91 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -83.82 0.65 -83.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964361186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.422 kcal (2) G-P(sol) polarization free energy of solvation -83.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds