Wall clock time and date at job start Sat Apr 11 2020 07:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35988 * 117.00005 * 2 1 4 4 C 1.38538 * 120.11925 * 359.72135 * 3 2 1 5 5 C 1.38125 * 119.95291 * 179.74151 * 4 3 2 6 6 C 1.38539 * 120.41761 * 0.51168 * 5 4 3 7 7 C 1.38227 * 119.96274 * 359.77340 * 6 5 4 8 8 C 1.38939 * 119.85650 * 359.96559 * 7 6 5 9 9 N 1.40172 * 119.97303 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00295 * 37.50627 * 9 8 7 11 11 O 1.21593 * 120.00003 * 3.17723 * 10 9 8 12 12 N 1.34776 * 120.00494 * 183.17609 * 10 9 8 13 13 C 1.46958 * 120.59897 * 184.97412 * 12 10 9 14 14 C 1.53808 * 108.40438 * 124.75334 * 13 12 10 15 15 N 1.46971 * 108.57697 * 49.63674 * 14 13 12 16 16 C 1.36936 * 120.59405 * 124.62684 * 15 14 13 17 17 H 1.08006 * 120.00001 * 211.80307 * 16 15 14 18 18 C 1.38814 * 120.00038 * 31.79840 * 16 15 14 19 19 N 1.31615 * 119.99949 * 10.77210 * 18 16 15 20 20 Si 1.86796 * 119.99862 * 190.77265 * 18 16 15 21 21 H 1.48511 * 109.47198 * 60.00269 * 20 18 16 22 22 H 1.48500 * 109.47139 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47307 * 300.00043 * 20 18 16 24 24 C 1.46962 * 118.81168 * 304.65148 * 15 14 13 25 25 C 1.46971 * 120.59049 * 5.24790 * 12 10 9 26 26 C 1.51372 * 109.77496 * 179.97438 * 7 6 5 27 27 C 1.54347 * 105.16499 * 342.80602 * 26 7 6 28 28 C 1.51400 * 130.30707 * 179.74251 * 6 5 4 29 29 H 1.08997 * 109.46504 * 60.00200 * 1 2 3 30 30 H 1.08997 * 109.46653 * 300.00185 * 1 2 3 31 31 H 1.08993 * 109.46973 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.02043 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.79474 * 180.30010 * 5 4 3 34 34 H 0.97004 * 119.99481 * 217.50670 * 9 8 7 35 35 H 1.08998 * 109.60949 * 244.53831 * 13 12 10 36 36 H 1.09005 * 109.61018 * 5.04496 * 13 12 10 37 37 H 1.08995 * 109.74468 * 289.85076 * 14 13 12 38 38 H 1.09001 * 109.53666 * 169.29862 * 14 13 12 39 39 H 0.96999 * 119.99964 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.61113 * 295.47877 * 24 15 14 41 41 H 1.08999 * 109.75216 * 175.05302 * 24 15 14 42 42 H 1.09001 * 109.60616 * 354.94929 * 25 12 10 43 43 H 1.09000 * 109.60868 * 115.28905 * 25 12 10 44 44 H 1.09001 * 110.30550 * 101.72878 * 26 7 6 45 45 H 1.08994 * 110.29958 * 223.88127 * 26 7 6 46 46 H 1.09003 * 110.82200 * 268.14006 * 27 26 7 47 47 H 1.08994 * 110.99366 * 144.66756 * 27 26 7 48 48 H 1.08998 * 110.30215 * 316.16174 * 28 6 5 49 49 H 1.08997 * 110.29801 * 78.20687 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2943 2.3751 -0.0058 5 6 1.9249 3.6040 -0.0004 6 6 3.3081 3.6826 0.0002 7 6 4.0653 2.5262 0.0001 8 6 3.4361 1.2874 0.0001 9 7 4.2015 0.1132 0.0005 10 6 5.3449 0.0543 0.7114 11 8 5.6831 0.9989 1.3983 12 7 6.1137 -1.0515 0.6611 13 6 7.3049 -1.1739 1.5130 14 6 7.1841 -2.4692 2.3336 15 7 6.8495 -3.5719 1.4213 16 6 7.6310 -4.6951 1.3695 17 1 7.7360 -5.2376 0.4415 18 6 8.2884 -5.1365 2.5097 19 7 7.9996 -4.6104 3.6811 20 14 9.5829 -6.4770 2.3815 21 1 10.6792 -6.0228 1.4885 22 1 10.1318 -6.7657 3.7307 23 1 8.9675 -7.7077 1.8231 24 6 5.6614 -3.4472 0.5654 25 6 5.7791 -2.1542 -0.2511 26 6 5.5376 2.8780 0.0001 27 6 5.5995 4.3561 -0.4401 28 6 4.2204 4.8909 0.0004 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2157 2.3212 -0.0108 33 1 1.3361 4.5093 -0.0001 34 1 3.9082 -0.6571 -0.5110 35 1 8.1980 -1.2147 0.8894 36 1 7.3637 -0.3175 2.1849 37 1 6.3972 -2.3603 3.0799 38 1 8.1334 -2.6780 2.8270 39 1 8.4592 -4.9185 4.4777 40 1 4.7660 -3.4078 1.1857 41 1 5.6019 -4.3015 -0.1090 42 1 4.8298 -1.9454 -0.7445 43 1 6.5645 -2.2612 -0.9993 44 1 5.9537 2.7637 1.0011 45 1 6.0766 2.2493 -0.7085 46 1 5.7180 4.4339 -1.5208 47 1 6.4022 4.8836 0.0750 48 1 3.8601 5.6369 -0.7080 49 1 4.2811 5.3187 1.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670749895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:28 Heat of formation + Delta-G solvation = -7.272258 kcal Electronic energy + Delta-G solvation = -31350.743563 eV Core-core repulsion = 27278.892912 eV Total energy + Delta-G solvation = -4071.850650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.19085 -40.81571 -39.47785 -38.52481 -36.37420 -35.65456 -35.25529 -33.10514 -32.09251 -30.82343 -29.50636 -28.93607 -28.56589 -27.06654 -25.60053 -24.59471 -23.68412 -22.63681 -21.99977 -21.38055 -20.52568 -19.68093 -18.75545 -18.22938 -17.83530 -17.48688 -16.85393 -16.64483 -16.39988 -16.22739 -16.15036 -15.50086 -15.39899 -15.34720 -15.05507 -14.96558 -14.83491 -14.26480 -14.12944 -13.81411 -13.49873 -13.43439 -13.06378 -12.97173 -12.66891 -12.64201 -12.50587 -12.46124 -12.30628 -12.14512 -12.07075 -12.02714 -11.86524 -11.82056 -11.70081 -11.42065 -11.23729 -10.82141 -10.60656 -9.86256 -9.23999 -8.73858 -8.58592 -7.87316 -5.42651 0.33555 0.41495 1.48696 1.50733 1.54695 1.58255 2.08560 2.29683 2.50175 2.76354 2.82398 3.28403 3.57709 3.62313 3.73281 4.06135 4.12643 4.18709 4.20352 4.21328 4.25992 4.35469 4.39583 4.43652 4.43864 4.46143 4.63996 4.68457 4.76430 4.76933 4.80635 4.85471 4.96249 5.00565 5.04062 5.07821 5.14384 5.22172 5.25099 5.34820 5.40291 5.49751 5.57935 5.61244 5.67314 5.74231 5.84277 5.96436 6.37353 6.46195 6.86976 7.10303 7.52000 7.77530 8.33022 9.17182 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.002873 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.717865 B = 9742.347980 C =10928.325140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.091 3.909 4 C -0.188 4.188 5 C -0.084 4.084 6 C -0.127 4.127 7 C -0.079 4.079 8 C 0.117 3.883 9 N -0.671 5.671 10 C 0.695 3.305 11 O -0.602 6.602 12 N -0.616 5.616 13 C 0.123 3.877 14 C 0.172 3.828 15 N -0.607 5.607 16 C -0.266 4.266 17 H 0.074 0.926 18 C -0.049 4.049 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.129 3.871 25 C 0.105 3.895 26 C -0.066 4.066 27 C -0.121 4.121 28 C -0.069 4.069 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.412 0.588 35 H 0.065 0.935 36 H 0.077 0.923 37 H -0.011 1.011 38 H 0.073 0.927 39 H 0.251 0.749 40 H 0.011 0.989 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.804 17.127 -12.380 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C 0.043 3.957 4 C -0.207 4.207 5 C -0.102 4.102 6 C -0.128 4.128 7 C -0.082 4.082 8 C 0.022 3.978 9 N -0.321 5.321 10 C 0.398 3.602 11 O -0.482 6.482 12 N -0.352 5.352 13 C -0.001 4.001 14 C 0.045 3.955 15 N -0.331 5.331 16 C -0.396 4.396 17 H 0.092 0.908 18 C -0.244 4.244 19 N -0.583 5.583 20 Si 0.801 3.199 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.200 1.200 24 C 0.003 3.997 25 C -0.019 4.019 26 C -0.103 4.103 27 C -0.158 4.158 28 C -0.106 4.106 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.252 0.748 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.007 0.993 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.115 0.885 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.368 17.463 -11.749 25.484 hybrid contribution 0.427 -1.575 0.385 1.676 sum -13.941 15.889 -11.364 23.999 Atomic orbital electron populations 1.23332 0.76120 1.05401 1.02446 1.86025 1.23684 1.26275 1.89145 1.18741 0.89768 0.86131 1.01035 1.21245 1.01050 0.90706 1.07699 1.20709 0.92693 0.98176 0.98638 1.20783 0.94072 0.95365 1.02608 1.20433 0.97352 0.91297 0.99138 1.16741 0.87362 0.85562 1.08137 1.42458 1.22471 1.15800 1.51341 1.15997 0.80410 0.82822 0.80943 1.90803 1.74307 1.36443 1.46636 1.47223 1.27868 1.16841 1.43302 1.22117 0.85713 0.98941 0.93366 1.20995 0.99202 0.85109 0.90207 1.44159 1.26871 1.16290 1.45776 1.19527 1.22617 1.03344 0.94078 0.90815 1.25991 1.02996 1.00734 0.94685 1.70131 1.44040 1.46024 0.98134 0.85258 0.79104 0.79276 0.76238 1.20088 1.22332 1.19954 1.21420 0.88669 0.96321 0.93282 1.22235 1.01282 0.86670 0.91757 1.21216 0.91150 0.96120 1.01851 1.22403 0.97737 0.94101 1.01583 1.20984 0.92333 0.94550 1.02701 0.90843 0.91923 0.86860 0.82041 0.82706 0.74829 0.91635 0.90461 0.99258 0.90913 0.94003 0.97105 0.90072 0.88631 0.90446 0.89461 0.94033 0.90543 0.89756 0.88531 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.82 113.37 1.11 1.40 16 2 O -0.34 -8.01 10.09 -93.42 -0.94 -8.95 16 3 C 0.09 2.33 6.70 22.57 0.15 2.48 16 4 C -0.19 -3.66 9.03 22.31 0.20 -3.46 16 5 C -0.08 -1.58 10.03 22.31 0.22 -1.35 16 6 C -0.13 -2.96 6.14 -19.57 -0.12 -3.09 16 7 C -0.08 -2.35 5.48 -19.49 -0.11 -2.46 16 8 C 0.12 3.60 6.23 38.20 0.24 3.83 16 9 N -0.67 -21.42 5.06 -316.71 -1.60 -23.02 16 10 C 0.70 26.25 7.52 179.06 1.35 27.59 16 11 O -0.60 -25.44 10.92 -4.01 -0.04 -25.49 16 12 N -0.62 -23.25 2.94 -835.15 -2.46 -25.71 16 13 C 0.12 5.17 6.61 86.56 0.57 5.74 16 14 C 0.17 8.63 5.48 86.56 0.47 9.10 16 15 N -0.61 -30.32 2.96 -697.34 -2.06 -32.38 16 16 C -0.27 -14.24 9.58 84.03 0.80 -13.43 16 17 H 0.07 3.75 7.85 -2.91 -0.02 3.73 16 18 C -0.05 -2.68 5.05 84.86 0.43 -2.25 16 19 N -0.94 -55.55 11.05 21.65 0.24 -55.32 16 20 Si 0.97 44.16 29.57 68.60 2.03 46.19 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.13 5.17 6.67 86.41 0.58 5.75 16 25 C 0.10 3.41 6.59 86.41 0.57 3.97 16 26 C -0.07 -1.97 4.64 30.52 0.14 -1.83 16 27 C -0.12 -2.50 7.08 31.50 0.22 -2.27 16 28 C -0.07 -1.25 6.77 30.52 0.21 -1.04 16 29 H 0.07 0.71 7.65 -2.39 -0.02 0.69 16 30 H 0.06 0.75 7.68 -2.39 -0.02 0.73 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.16 2.02 6.31 -2.91 -0.02 2.00 16 33 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.41 11.49 6.10 -92.71 -0.57 10.92 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.08 3.29 7.02 -2.38 -0.02 3.27 16 37 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 38 H 0.07 4.06 6.05 -2.39 -0.01 4.04 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 2.97 7.94 -2.39 -0.02 2.95 16 42 H 0.10 2.44 5.56 -2.39 -0.01 2.43 16 43 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.09 3.13 5.86 -2.39 -0.01 3.12 16 45 H 0.04 1.33 7.86 -2.39 -0.02 1.31 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -71.93 378.83 2.61 -69.31 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.41 Total: 26.68 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 7.04 Total: 28.68 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -5.88 Total: -136.42 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.99 Total: -34.44 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.93 2.61 -69.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670749895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.040 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds