Wall clock time and date at job start Sat Apr 11 2020 07:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99718 * 2 1 4 4 C 1.38811 * 120.02358 * 359.97438 * 3 2 1 5 5 C 1.38167 * 120.08580 * 180.02562 * 4 3 2 6 6 C 1.38169 * 120.12459 * 0.04202 * 5 4 3 7 7 C 1.50693 * 119.98218 * 179.97438 * 6 5 4 8 8 C 1.53003 * 117.49671 * 8.60496 * 7 6 5 9 9 C 1.53003 * 117.50076 * 299.98122 * 7 6 5 10 10 C 1.38887 * 120.03643 * 359.95597 * 6 5 4 11 11 N 1.39941 * 120.04012 * 179.97438 * 10 6 5 12 12 C 1.34777 * 120.00352 * 156.69626 * 11 10 6 13 13 O 1.21590 * 119.99531 * 354.72651 * 12 11 10 14 14 N 1.34778 * 120.00351 * 174.72226 * 12 11 10 15 15 C 1.46965 * 120.59462 * 184.95898 * 14 12 11 16 16 C 1.53369 * 108.63363 * 235.25160 * 15 14 12 17 17 N 1.46963 * 108.63419 * 310.57713 * 16 15 14 18 18 C 1.36937 * 120.59012 * 235.20571 * 17 16 15 19 19 H 1.08005 * 119.99916 * 148.94840 * 18 17 16 20 20 C 1.38810 * 120.00061 * 328.66327 * 18 17 16 21 21 N 1.31616 * 120.00316 * 350.53742 * 20 18 17 22 22 Si 1.86803 * 120.00033 * 170.53362 * 20 18 17 23 23 H 1.48499 * 109.47147 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47544 * 120.00155 * 22 20 18 25 25 H 1.48503 * 109.47004 * 240.00347 * 22 20 18 26 26 C 1.46957 * 118.81491 * 55.47905 * 17 16 15 27 27 C 1.46963 * 120.59127 * 4.98424 * 14 12 11 28 28 C 1.38585 * 120.01992 * 180.27766 * 3 2 1 29 29 H 1.08998 * 109.47051 * 60.00096 * 1 2 3 30 30 H 1.08997 * 109.46973 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47245 * 299.99890 * 1 2 3 32 32 H 1.08001 * 119.95203 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.93838 * 180.02562 * 5 4 3 34 34 H 1.08999 * 115.54993 * 154.30531 * 7 6 5 35 35 H 1.08999 * 117.50044 * 359.97438 * 8 7 6 36 36 H 1.09003 * 117.49864 * 145.01705 * 8 7 6 37 37 H 1.08998 * 117.49602 * 214.97696 * 9 7 6 38 38 H 1.08991 * 117.49664 * 359.97438 * 9 7 6 39 39 H 0.97009 * 120.00102 * 336.70466 * 11 10 6 40 40 H 1.08991 * 109.61135 * 115.50521 * 15 14 12 41 41 H 1.08997 * 109.60610 * 354.99416 * 15 14 12 42 42 H 1.09000 * 109.61078 * 190.82924 * 16 15 14 43 43 H 1.09007 * 109.61322 * 70.32036 * 16 15 14 44 44 H 0.97005 * 120.00570 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.61155 * 64.26597 * 26 17 16 46 46 H 1.09006 * 109.61274 * 184.77674 * 26 17 16 47 47 H 1.09000 * 109.60932 * 244.49171 * 27 14 12 48 48 H 1.09003 * 109.61123 * 4.83353 * 27 14 12 49 49 H 1.07998 * 120.06460 * 359.97186 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3754 -0.0005 5 6 1.9162 3.6072 -0.0011 6 6 3.2957 3.6840 -0.0020 7 6 3.9750 5.0292 -0.0031 8 6 3.0957 6.2648 0.1998 9 6 3.6874 5.9649 -1.1790 10 6 4.0567 2.5222 -0.0014 11 7 5.4540 2.6000 -0.0028 12 6 6.1869 1.5677 0.4594 13 8 5.6357 0.6094 0.9656 14 7 7.5307 1.5976 0.3604 15 6 8.3362 0.4351 0.7601 16 6 9.3680 0.8881 1.8004 17 7 10.0541 2.0840 1.2915 18 6 11.4195 2.1147 1.1918 19 1 11.8913 2.6992 0.4157 20 6 12.1973 1.3994 2.0919 21 7 11.6404 0.8454 3.1479 22 14 14.0346 1.2229 1.8043 23 1 14.4107 1.9335 0.5558 24 1 14.7738 1.8114 2.9500 25 1 14.3801 -0.2159 1.6789 26 6 9.2490 3.2485 0.8971 27 6 8.2168 2.7934 -0.1485 28 6 3.4298 1.2840 -0.0058 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2118 2.3183 -0.0005 33 1 1.3260 4.5115 -0.0011 34 1 4.9782 5.0496 0.4226 35 1 2.0258 6.1047 0.3337 36 1 3.5203 7.0983 0.7592 37 1 4.5013 6.6011 -1.5266 38 1 3.0072 5.6073 -1.9519 39 1 5.8951 3.3970 -0.3364 40 1 8.8495 0.0287 -0.1113 41 1 7.6888 -0.3265 1.1946 42 1 10.0942 0.0924 1.9660 43 1 8.8632 1.1267 2.7366 44 1 12.1840 0.3458 3.7771 45 1 8.7359 3.6512 1.7704 46 1 9.8966 4.0120 0.4659 47 1 8.7216 2.5549 -1.0847 48 1 7.4901 3.5883 -0.3169 49 1 4.0194 0.3792 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672648943.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:37 Heat of formation + Delta-G solvation = 17.736032 kcal Electronic energy + Delta-G solvation = -30645.968201 eV Core-core repulsion = 26575.201991 eV Total energy + Delta-G solvation = -4070.766209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.14312 -40.86971 -39.44901 -38.62233 -37.01735 -35.92488 -35.43375 -33.10760 -32.05672 -31.34511 -30.26280 -28.59152 -28.01623 -25.66150 -24.89713 -24.62673 -23.58391 -23.08485 -22.18182 -21.27327 -20.68305 -20.03668 -19.11400 -18.21857 -17.56821 -17.37970 -16.82454 -16.70485 -16.59112 -16.47925 -16.10611 -15.64947 -15.49997 -15.36197 -15.16885 -15.03095 -14.86224 -14.43446 -14.23161 -13.88197 -13.73075 -13.48081 -13.22761 -13.04374 -12.74360 -12.52631 -12.46376 -12.34375 -12.25441 -12.19695 -12.04641 -12.02167 -11.89651 -11.67419 -11.60094 -11.26175 -11.08306 -10.95241 -10.63329 -9.93194 -9.32807 -8.78982 -8.61225 -7.87090 -5.42691 0.29396 0.41604 1.42572 1.48157 1.50140 1.60121 1.95477 2.35342 2.49933 2.67313 2.79241 3.19534 3.29092 3.56602 3.65422 3.84541 3.99210 4.09741 4.15001 4.16354 4.21808 4.25871 4.31032 4.40973 4.42369 4.44776 4.48985 4.56533 4.61107 4.69508 4.74659 4.80061 4.83351 4.89488 4.98777 5.03032 5.15279 5.20127 5.26291 5.29438 5.36534 5.40690 5.48513 5.52161 5.61961 5.67519 5.86130 5.92051 6.37596 6.50657 6.77791 7.10152 7.34741 7.77517 8.32128 9.17376 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002630 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.690460 B =10644.712710 C =12076.508313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.344 6.344 3 C 0.130 3.870 4 C -0.222 4.222 5 C -0.056 4.056 6 C -0.121 4.121 7 C -0.136 4.136 8 C -0.164 4.164 9 C -0.159 4.159 10 C 0.201 3.799 11 N -0.666 5.666 12 C 0.698 3.302 13 O -0.611 6.611 14 N -0.612 5.612 15 C 0.119 3.881 16 C 0.170 3.830 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.077 0.923 20 C -0.052 4.052 21 N -0.939 5.939 22 Si 0.973 3.027 23 H -0.261 1.261 24 H -0.295 1.295 25 H -0.293 1.293 26 C 0.128 3.872 27 C 0.101 3.899 28 C -0.198 4.198 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.420 0.580 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.076 0.924 43 H -0.011 1.011 44 H 0.250 0.750 45 H 0.013 0.987 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.102 0.898 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.928 10.212 -11.245 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C 0.084 3.916 4 C -0.241 4.241 5 C -0.074 4.074 6 C -0.125 4.125 7 C -0.154 4.154 8 C -0.201 4.201 9 C -0.196 4.196 10 C 0.105 3.895 11 N -0.316 5.316 12 C 0.400 3.600 13 O -0.492 6.492 14 N -0.347 5.347 15 C -0.006 4.006 16 C 0.043 3.957 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.095 0.905 20 C -0.247 4.247 21 N -0.585 5.585 22 Si 0.801 3.199 23 H -0.185 1.185 24 H -0.222 1.222 25 H -0.219 1.219 26 C 0.001 3.999 27 C -0.022 4.022 28 C -0.220 4.220 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.175 0.825 33 H 0.178 0.822 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.261 0.739 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.007 0.993 44 H 0.059 0.941 45 H 0.031 0.969 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.120 0.880 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.018 9.256 -10.796 27.057 hybrid contribution 1.383 -0.324 0.509 1.509 sum -21.635 8.932 -10.287 25.567 Atomic orbital electron populations 1.23360 0.76156 1.05448 1.02562 1.86065 1.23792 1.27247 1.88665 1.18904 0.91356 0.85254 0.96048 1.21417 1.01162 0.91217 1.10292 1.20911 0.92578 0.98084 0.95848 1.18899 0.93616 0.91753 1.08183 1.20804 1.00176 0.87972 1.06470 1.23159 0.99856 0.97312 0.99744 1.23139 1.03902 1.01102 0.91417 1.17140 0.81426 0.93055 0.97909 1.42647 1.04337 1.19392 1.65203 1.16029 0.81896 0.83005 0.79027 1.90845 1.70802 1.36271 1.51273 1.47304 1.03042 1.17678 1.66678 1.22090 0.92541 0.87009 0.98916 1.20935 0.92411 0.91073 0.91256 1.44207 1.02438 1.10716 1.75818 1.19613 0.82208 1.28215 1.08924 0.90502 1.25998 1.02319 1.01428 0.94938 1.70129 1.36023 1.39165 1.13218 0.85125 0.80077 0.77092 0.77631 1.18515 1.22192 1.21948 1.21548 0.93062 0.90130 0.95117 1.22416 0.95727 0.86153 0.97943 1.20555 0.92898 0.98323 1.10198 0.91000 0.86804 0.91535 0.82533 0.82174 0.87900 0.87293 0.87583 0.87247 0.88167 0.73886 0.91206 0.90730 0.90589 0.99311 0.94056 0.96870 0.89661 0.89948 0.88045 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -9.13 10.49 -92.43 -0.97 -10.10 16 3 C 0.13 3.60 6.68 22.49 0.15 3.75 16 4 C -0.22 -4.39 9.04 22.39 0.20 -4.19 16 5 C -0.06 -1.01 9.29 22.24 0.21 -0.81 16 6 C -0.12 -2.67 5.63 -19.73 -0.11 -2.78 16 7 C -0.14 -2.28 5.41 -11.54 -0.06 -2.34 16 8 C -0.16 -1.93 9.86 30.60 0.30 -1.62 16 9 C -0.16 -1.87 10.16 30.60 0.31 -1.56 16 10 C 0.20 5.86 6.43 38.13 0.25 6.10 16 11 N -0.67 -19.33 5.02 -317.22 -1.59 -20.92 16 12 C 0.70 26.01 8.12 179.05 1.45 27.47 16 13 O -0.61 -27.45 12.83 -4.00 -0.05 -27.50 16 14 N -0.61 -22.34 2.95 -835.15 -2.46 -24.80 16 15 C 0.12 4.96 6.60 86.41 0.57 5.53 16 16 C 0.17 8.46 5.46 86.41 0.47 8.94 16 17 N -0.61 -29.56 2.96 -697.34 -2.06 -31.62 16 18 C -0.26 -13.60 9.58 84.03 0.81 -12.80 16 19 H 0.08 3.81 7.85 -2.91 -0.02 3.79 16 20 C -0.05 -2.82 5.08 84.86 0.43 -2.39 16 21 N -0.94 -55.27 10.94 21.65 0.24 -55.04 16 22 Si 0.97 43.78 29.56 68.60 2.03 45.81 16 23 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 26 C 0.13 4.82 6.70 86.57 0.58 5.40 16 27 C 0.10 3.03 6.58 86.57 0.57 3.60 16 28 C -0.20 -6.62 8.67 22.48 0.19 -6.42 16 29 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 32 H 0.16 2.02 6.29 -2.91 -0.02 2.01 16 33 H 0.16 1.79 6.01 -2.91 -0.02 1.77 16 34 H 0.10 1.82 7.14 -2.39 -0.02 1.80 16 35 H 0.11 1.02 6.17 -2.39 -0.01 1.00 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.42 9.45 4.79 -92.70 -0.44 9.00 16 40 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.07 3.22 6.99 -2.39 -0.02 3.20 16 42 H 0.08 4.22 5.96 -2.39 -0.01 4.21 16 43 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 44 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.09 2.90 7.93 -2.38 -0.02 2.88 16 47 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.10 2.17 5.61 -2.39 -0.01 2.15 16 49 H 0.12 4.99 5.68 -2.91 -0.02 4.97 16 Total: -1.00 -74.37 384.36 3.11 -71.26 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.54 Total: 25.65 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 7.43 Total: 27.26 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -5.88 Total: -132.39 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -1.02 Total: -37.59 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -74.37 3.11 -71.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672648943.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.997 kcal (2) G-P(sol) polarization free energy of solvation -74.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds