Wall clock time and date at job start Sat Apr 11 2020 07:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 120.00170 * 2 1 4 4 C 1.34778 * 120.00133 * 180.02562 * 2 1 3 5 5 O 1.21539 * 119.99944 * 5.18060 * 4 2 1 6 6 C 1.47946 * 120.00058 * 185.18460 * 4 2 1 7 7 C 1.39219 * 120.19631 * 303.40173 * 6 4 2 8 8 C 1.38209 * 119.99261 * 180.02562 * 7 6 4 9 9 C 1.38368 * 120.40192 * 0.02562 * 8 7 6 10 10 C 1.38210 * 120.39775 * 359.97438 * 9 8 7 11 11 C 1.39213 * 119.99718 * 0.02562 * 10 9 8 12 12 C 1.47947 * 120.19948 * 179.72535 * 11 10 9 13 13 O 1.21530 * 119.99988 * 174.25098 * 12 11 10 14 14 N 1.34774 * 119.99828 * 354.24438 * 12 11 10 15 15 C 1.46504 * 120.00123 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47317 * 185.00524 * 15 14 12 17 17 N 1.46501 * 112.85061 * 286.71503 * 16 15 14 18 18 C 1.36933 * 120.00205 * 304.10521 * 17 16 15 19 19 H 1.08000 * 119.99836 * 4.93139 * 18 17 16 20 20 C 1.38813 * 120.00195 * 184.92862 * 18 17 16 21 21 N 1.31617 * 119.99809 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47042 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46670 * 120.00169 * 22 20 18 25 25 H 1.48492 * 109.47142 * 239.99914 * 22 20 18 26 26 C 1.53778 * 113.61610 * 155.52093 * 16 15 14 27 27 C 1.53954 * 87.02255 * 220.04589 * 26 16 15 28 28 C 1.53777 * 87.10801 * 25.36496 * 27 26 16 29 29 H 1.09004 * 109.46996 * 269.99399 * 1 2 3 30 30 H 1.08999 * 109.47021 * 29.99450 * 1 2 3 31 31 H 1.08994 * 109.47125 * 149.99863 * 1 2 3 32 32 H 1.09000 * 109.47413 * 264.77415 * 3 2 1 33 33 H 1.09001 * 109.46930 * 24.77968 * 3 2 1 34 34 H 1.09005 * 109.47001 * 144.77073 * 3 2 1 35 35 H 1.07997 * 120.00140 * 0.05263 * 7 6 4 36 36 H 1.08000 * 119.80128 * 180.02562 * 8 7 6 37 37 H 1.08004 * 119.79892 * 179.97438 * 9 8 7 38 38 H 1.08007 * 120.00365 * 179.97438 * 10 9 8 39 39 H 0.96997 * 120.00416 * 0.02562 * 14 12 11 40 40 H 1.09002 * 109.47034 * 305.00602 * 15 14 12 41 41 H 1.09002 * 109.47146 * 65.00219 * 15 14 12 42 42 H 0.97007 * 119.99410 * 124.09864 * 17 16 15 43 43 H 0.97004 * 120.00028 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.61451 * 334.56842 * 26 16 15 45 45 H 1.09004 * 113.61397 * 105.46452 * 26 16 15 46 46 H 1.08990 * 113.54098 * 270.81318 * 27 26 16 47 47 H 1.09001 * 113.66461 * 139.93035 * 27 26 16 48 48 H 1.09003 * 113.61340 * 220.08996 * 28 27 26 49 49 H 1.09002 * 113.61945 * 89.18913 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5349 -2.2176 -0.0960 6 6 3.6138 -1.1698 0.1153 7 6 4.3893 -0.4635 -0.8001 8 6 5.7668 -0.4693 -0.6883 9 6 6.3838 -1.1747 0.3297 10 6 5.6298 -1.8815 1.2474 11 6 4.2411 -1.8870 1.1504 12 6 3.4299 -2.6471 2.1267 13 8 2.2175 -2.5660 2.1034 14 7 4.0355 -3.4294 3.0420 15 6 3.2323 -4.1825 4.0084 16 6 4.1579 -4.8842 5.0041 17 7 4.8549 -6.0331 4.4206 18 6 4.1389 -7.0456 3.8399 19 1 3.0668 -6.9607 3.7405 20 6 4.7909 -8.1810 3.3788 21 7 6.0975 -8.2842 3.4994 22 14 3.8140 -9.5625 2.5872 23 1 2.3731 -9.2037 2.5712 24 1 4.2878 -9.7689 1.1949 25 1 4.0048 -10.8127 3.3654 26 6 3.4908 -5.1898 6.3555 27 6 4.8215 -4.7819 7.0137 28 6 5.0855 -3.9228 5.7659 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 2.4603 1.5366 -1.0234 33 1 1.5711 2.0499 0.4307 34 1 3.1062 1.1636 0.5928 35 1 3.9145 0.0892 -1.5972 36 1 6.3654 0.0800 -1.3999 37 1 7.4610 -1.1729 0.4077 38 1 6.1180 -2.4302 2.0393 39 1 5.0031 -3.4939 3.0608 40 1 2.5735 -3.4991 4.5442 41 1 2.6338 -4.9263 3.4823 42 1 5.8237 -6.0765 4.4457 43 1 6.5531 -9.0778 3.1776 44 1 2.6628 -4.5224 6.5946 45 1 3.2402 -6.2420 6.4907 46 1 5.5212 -5.6094 7.1301 47 1 4.6976 -4.1994 7.9266 48 1 6.1206 -3.9536 5.4256 49 1 4.6944 -2.9084 5.8433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673230215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:55 Heat of formation + Delta-G solvation = -18.422673 kcal Electronic energy + Delta-G solvation = -31037.095181 eV Core-core repulsion = 26964.761012 eV Total energy + Delta-G solvation = -4072.334169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80575 -40.68944 -39.77115 -38.96163 -36.51805 -35.43873 -35.26319 -32.51654 -32.46538 -31.87558 -28.92632 -28.72644 -27.27304 -26.72099 -25.89632 -24.73834 -24.01231 -23.08281 -21.55546 -20.77482 -19.77990 -19.26058 -18.83762 -18.09512 -17.46214 -17.11633 -16.88241 -16.56880 -16.25654 -16.20248 -15.84791 -15.74045 -15.52151 -15.39786 -15.03176 -14.57160 -14.48415 -14.26656 -14.05633 -13.82358 -13.51482 -13.44922 -13.31797 -13.14123 -13.01042 -12.98012 -12.93477 -12.83236 -12.67993 -12.37259 -12.15020 -12.02853 -11.61812 -11.44764 -11.15048 -10.96666 -10.89965 -10.72033 -10.17466 -9.99075 -9.88193 -9.64693 -9.02147 -7.98274 -5.24438 -0.31148 0.14098 1.39418 1.42267 1.50351 1.67241 1.86395 2.07338 2.22910 2.50799 2.81694 3.33147 3.46986 3.65552 3.70837 3.77779 3.78689 3.96079 4.04735 4.08599 4.19176 4.26694 4.33113 4.35578 4.39854 4.45793 4.55443 4.68599 4.72636 4.79475 4.83119 4.85670 4.87746 4.88438 4.90550 4.96037 5.10475 5.19347 5.26880 5.28689 5.38983 5.40043 5.46684 5.54378 5.57637 5.68200 5.82231 6.26657 6.31269 6.56289 7.15395 7.27660 7.33389 8.05764 8.30935 9.24182 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010813 B = 0.003249 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.849740 B = 8615.445592 C = 8853.056588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.622 5.622 3 C 0.073 3.927 4 C 0.553 3.447 5 O -0.564 6.564 6 C -0.096 4.096 7 C -0.094 4.094 8 C -0.083 4.083 9 C -0.100 4.100 10 C -0.091 4.091 11 C -0.119 4.119 12 C 0.531 3.469 13 O -0.564 6.564 14 N -0.695 5.695 15 C 0.134 3.866 16 C 0.159 3.841 17 N -0.703 5.703 18 C -0.225 4.225 19 H 0.060 0.940 20 C -0.061 4.061 21 N -0.958 5.958 22 Si 0.953 3.047 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.288 1.288 26 C -0.155 4.155 27 C -0.118 4.118 28 C -0.124 4.124 29 H 0.045 0.955 30 H 0.110 0.890 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.158 0.842 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.407 0.593 40 H 0.067 0.933 41 H 0.024 0.976 42 H 0.380 0.620 43 H 0.251 0.749 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.062 0.938 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 27.004 -5.372 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C -0.068 4.068 4 C 0.342 3.658 5 O -0.441 6.441 6 C -0.100 4.100 7 C -0.112 4.112 8 C -0.101 4.101 9 C -0.117 4.117 10 C -0.110 4.110 11 C -0.123 4.123 12 C 0.319 3.681 13 O -0.444 6.444 14 N -0.346 5.346 15 C 0.008 3.992 16 C 0.068 3.932 17 N -0.343 5.343 18 C -0.357 4.357 19 H 0.078 0.922 20 C -0.254 4.254 21 N -0.608 5.608 22 Si 0.783 3.217 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.215 1.215 26 C -0.195 4.195 27 C -0.156 4.156 28 C -0.162 4.162 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.176 0.824 36 H 0.195 0.805 37 H 0.187 0.813 38 H 0.158 0.842 39 H 0.243 0.757 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.213 0.787 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.106 0.894 48 H 0.091 0.909 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.440 26.383 -5.465 26.947 hybrid contribution -0.273 -1.896 -0.285 1.937 sum 0.166 24.487 -5.749 25.154 Atomic orbital electron populations 1.21665 0.78574 1.03531 1.01637 1.47740 1.07616 1.06521 1.73699 1.22150 0.97549 0.83595 1.03525 1.18656 0.87879 0.83683 0.75620 1.90777 1.70413 1.33273 1.49686 1.19926 0.92718 0.99816 0.97568 1.21551 0.94725 0.97371 0.97596 1.21796 0.93521 0.97094 0.97669 1.21746 1.02070 0.94737 0.93176 1.21560 0.90859 0.98290 1.00303 1.19935 0.94934 1.00427 0.96994 1.18912 0.87673 0.80132 0.81377 1.90811 1.15278 1.66214 1.72053 1.45617 1.10877 1.45375 1.32688 1.21588 0.93960 0.93306 0.90340 1.21101 0.93635 0.88574 0.89939 1.42091 1.05223 1.19170 1.67803 1.19292 0.91446 0.95667 1.29306 0.92245 1.25251 0.96509 1.00170 1.03491 1.69755 1.07564 1.29556 1.53975 0.85379 0.78118 0.80424 0.77731 1.20569 1.22256 1.21468 1.23467 0.97982 1.00741 0.97347 1.22579 0.96481 0.99131 0.97376 1.23098 0.99399 0.98023 0.95696 0.93636 0.87153 0.93160 0.89792 0.88718 0.91332 0.82432 0.80469 0.81317 0.84156 0.75659 0.91440 0.95777 0.78665 0.94014 0.89182 0.93683 0.91876 0.89424 0.90890 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.96 10.45 127.77 1.34 3.30 16 2 N -0.62 -15.34 3.27 -875.23 -2.87 -18.20 16 3 C 0.07 0.96 9.22 127.77 1.18 2.14 16 4 C 0.55 18.99 5.74 86.82 0.50 19.48 16 5 O -0.56 -26.14 14.39 18.96 0.27 -25.87 16 6 C -0.10 -2.72 4.66 -19.87 -0.09 -2.81 16 7 C -0.09 -1.61 8.02 22.50 0.18 -1.43 16 8 C -0.08 -0.97 10.03 22.29 0.22 -0.75 16 9 C -0.10 -1.42 10.03 22.29 0.22 -1.19 16 10 C -0.09 -2.03 9.52 22.50 0.21 -1.82 16 11 C -0.12 -3.68 5.90 -19.87 -0.12 -3.80 16 12 C 0.53 21.04 7.68 86.82 0.67 21.70 16 13 O -0.56 -27.01 13.03 18.99 0.25 -26.77 16 14 N -0.69 -25.56 5.29 -465.89 -2.47 -28.03 16 15 C 0.13 5.40 5.14 86.38 0.44 5.85 16 16 C 0.16 6.06 0.88 4.13 0.00 6.06 16 17 N -0.70 -33.77 5.23 -300.98 -1.57 -35.34 16 18 C -0.23 -12.59 9.35 84.03 0.79 -11.80 16 19 H 0.06 3.43 7.00 -2.91 -0.02 3.41 16 20 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 21 N -0.96 -57.42 13.06 21.65 0.28 -57.13 16 22 Si 0.95 48.34 29.55 68.60 2.03 50.37 16 23 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 26 C -0.15 -5.42 7.37 31.18 0.23 -5.19 16 27 C -0.12 -3.50 8.00 31.18 0.25 -3.26 16 28 C -0.12 -3.58 6.82 31.12 0.21 -3.36 16 29 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.11 1.41 8.07 -2.39 -0.02 1.39 16 31 H 0.05 1.39 7.35 -2.39 -0.02 1.37 16 32 H 0.08 0.64 7.44 -2.39 -0.02 0.62 16 33 H 0.09 0.81 8.03 -2.39 -0.02 0.80 16 34 H 0.07 0.95 6.51 -2.38 -0.02 0.94 16 35 H 0.16 1.78 7.05 -2.91 -0.02 1.76 16 36 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.14 2.83 6.44 -2.91 -0.02 2.81 16 39 H 0.41 13.21 6.27 -92.71 -0.58 12.63 16 40 H 0.07 2.56 7.90 -2.39 -0.02 2.54 16 41 H 0.02 1.18 6.91 -2.39 -0.02 1.17 16 42 H 0.38 19.14 7.83 -92.70 -0.73 18.41 16 43 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 44 H 0.09 2.73 7.94 -2.39 -0.02 2.71 16 45 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.07 2.02 8.10 -2.39 -0.02 2.01 16 49 H 0.10 2.50 8.10 -2.39 -0.02 2.48 16 Total: -1.00 -86.87 397.41 2.31 -84.56 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.32 Total: 36.37 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 6.70 Total: 20.04 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -6.62 Total: -138.71 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: 0.52 Total: -52.63 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -86.87 2.31 -84.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673230215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.142 kcal (2) G-P(sol) polarization free energy of solvation -86.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds