Wall clock time and date at job start Sat Apr 11 2020 07:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36941 * 119.99890 * 2 1 4 4 H 1.07996 * 119.99769 * 209.89487 * 3 2 1 5 5 C 1.38814 * 120.00150 * 29.88960 * 3 2 1 6 6 N 1.31626 * 120.00036 * 7.61869 * 5 3 2 7 7 Si 1.86793 * 119.99916 * 187.62338 * 5 3 2 8 8 H 1.48499 * 109.47279 * 59.99966 * 7 5 3 9 9 H 1.48503 * 109.47077 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47038 * 299.99667 * 7 5 3 11 11 C 1.46497 * 120.00031 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47335 * 95.32912 * 11 2 1 13 13 H 1.09004 * 109.87207 * 52.29601 * 12 11 2 14 14 C 1.54322 * 109.87922 * 291.12566 * 12 11 2 15 15 C 1.55164 * 102.94182 * 218.38673 * 14 12 11 16 16 C 1.54688 * 101.67493 * 35.33522 * 15 14 12 17 17 N 1.47016 * 109.88268 * 173.31622 * 12 11 2 18 18 C 1.34779 * 125.64820 * 298.31770 * 17 12 11 19 19 O 1.21278 * 120.00159 * 354.43156 * 18 17 12 20 20 C 1.50700 * 120.00077 * 174.42794 * 18 17 12 21 21 N 1.46493 * 109.47098 * 179.97438 * 20 18 17 22 22 C 1.34782 * 119.99903 * 179.97438 * 21 20 18 23 23 O 1.21557 * 119.99691 * 0.02562 * 22 21 20 24 24 C 1.47847 * 120.00101 * 180.02562 * 22 21 20 25 25 C 1.39573 * 120.14458 * 180.02562 * 24 22 21 26 26 C 1.37955 * 119.85091 * 180.02562 * 25 24 22 27 27 C 1.38356 * 120.14872 * 0.02562 * 26 25 24 28 28 C 1.38357 * 120.29041 * 359.97278 * 27 26 25 29 29 C 1.37955 * 120.14563 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.46775 * 265.74147 * 1 2 3 31 31 H 1.08994 * 109.46921 * 25.74013 * 1 2 3 32 32 H 1.08996 * 109.46591 * 145.73766 * 1 2 3 33 33 H 0.96996 * 119.99654 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.47129 * 335.32647 * 11 2 1 35 35 H 1.09006 * 109.47115 * 215.33275 * 11 2 1 36 36 H 1.08996 * 110.72191 * 336.74998 * 14 12 11 37 37 H 1.09005 * 110.72136 * 99.84845 * 14 12 11 38 38 H 1.08993 * 111.00502 * 153.57366 * 15 14 12 39 39 H 1.09004 * 111.00015 * 277.42946 * 15 14 12 40 40 H 1.08990 * 110.39456 * 204.36691 * 16 15 14 41 41 H 1.09000 * 110.23741 * 82.10815 * 16 15 14 42 42 H 1.09002 * 109.46509 * 60.00157 * 20 18 17 43 43 H 1.09001 * 109.46940 * 300.00756 * 20 18 17 44 44 H 0.96998 * 120.00211 * 0.02562 * 21 20 18 45 45 H 1.07999 * 120.07257 * 359.97438 * 25 24 22 46 46 H 1.08002 * 119.92742 * 179.97438 * 26 25 24 47 47 H 1.08004 * 119.85573 * 179.70735 * 27 26 25 48 48 H 1.08007 * 119.92869 * 180.02562 * 28 27 26 49 49 H 1.08000 * 120.07471 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1220 1.2482 -0.4662 5 6 1.5942 2.3082 0.5991 6 7 0.4826 2.2001 1.2956 7 14 2.4240 3.9717 0.4165 8 1 2.4983 4.3326 -1.0220 9 1 1.6374 4.9998 1.1443 10 1 3.7956 3.9053 0.9818 11 6 2.1976 -1.2687 0.0006 12 6 2.5686 -1.6441 -1.4355 13 1 3.0791 -0.8096 -1.9165 14 6 1.2961 -2.0117 -2.2273 15 6 1.7662 -3.1988 -3.1090 16 6 2.7616 -3.9144 -2.1657 17 7 3.4391 -2.8288 -1.4336 18 6 4.6573 -2.9076 -0.8623 19 8 5.1642 -1.9188 -0.3762 20 6 5.3896 -4.2242 -0.8276 21 7 6.6811 -4.0472 -0.1593 22 6 7.5128 -5.0975 -0.0111 23 8 7.1912 -6.1914 -0.4324 24 6 8.8160 -4.9190 0.6638 25 6 9.6798 -6.0044 0.8184 26 6 10.8941 -5.8311 1.4497 27 6 11.2563 -4.5849 1.9294 28 6 10.4047 -3.5049 1.7794 29 6 9.1875 -3.6645 1.1501 30 1 -0.3633 -0.0763 1.0248 31 1 -0.3633 0.9257 -0.4463 32 1 -0.3632 -0.8493 -0.5786 33 1 0.0946 2.9842 1.7145 34 1 1.5705 -2.0501 0.4299 35 1 3.1054 -1.1639 0.5949 36 1 0.4990 -2.3244 -1.5527 37 1 0.9706 -1.1744 -2.8447 38 1 0.9307 -3.8502 -3.3651 39 1 2.2713 -2.8424 -4.0068 40 1 3.4841 -4.4912 -2.7428 41 1 2.2249 -4.5620 -1.4724 42 1 5.5531 -4.5759 -1.8462 43 1 4.7947 -4.9565 -0.2815 44 1 6.9375 -3.1743 0.1772 45 1 9.3977 -6.9779 0.4455 46 1 11.5633 -6.6702 1.5703 47 1 12.2061 -4.4556 2.4271 48 1 10.6936 -2.5346 2.1558 49 1 8.5238 -2.8205 1.0332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674495475.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:58 Heat of formation + Delta-G solvation = -12.498359 kcal Electronic energy + Delta-G solvation = -29916.802908 eV Core-core repulsion = 25844.725637 eV Total energy + Delta-G solvation = -4072.077271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.60688 -39.89663 -38.48188 -37.46820 -35.27206 -34.64874 -32.04796 -31.51596 -31.34702 -31.22900 -29.28416 -27.68615 -26.03393 -25.16190 -24.03243 -22.93034 -22.56377 -21.15182 -20.75089 -20.53602 -19.14640 -18.24898 -16.99301 -16.69629 -16.40383 -16.24015 -15.96982 -15.64895 -15.27042 -14.74653 -14.71344 -14.56860 -14.26782 -13.89484 -13.67626 -13.50948 -13.43373 -13.13228 -13.06940 -12.90230 -12.72331 -12.44409 -12.00372 -11.98670 -11.85678 -11.41009 -11.22168 -11.05235 -10.90263 -10.81002 -10.65004 -10.41861 -10.23548 -10.16067 -9.92960 -9.82037 -9.62777 -9.47000 -9.31919 -9.19925 -8.60594 -8.38637 -6.59384 -5.71420 -3.22104 0.54897 1.04516 2.59143 2.64630 2.69021 3.27269 3.42009 3.46056 3.48532 3.59311 4.33459 4.43418 4.53062 4.54267 4.62202 4.64952 4.81182 4.94436 5.02798 5.04840 5.14715 5.18078 5.21023 5.41084 5.44904 5.48477 5.52515 5.63800 5.65655 5.72792 5.84437 5.98593 6.00706 6.04451 6.07460 6.11479 6.19288 6.21526 6.45574 6.50343 6.54770 6.72561 6.83277 7.00977 7.28052 7.35845 7.63593 7.70099 7.87430 7.95920 8.20423 8.49571 9.29224 9.89166 10.41315 11.35162 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.002593 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.131425 B =10796.868477 C =12902.964690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.594 5.594 3 C -0.254 4.254 4 H 0.065 0.935 5 C 0.006 3.994 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.147 3.853 12 C 0.115 3.885 13 H 0.078 0.922 14 C -0.115 4.115 15 C -0.135 4.135 16 C 0.096 3.904 17 N -0.607 5.607 18 C 0.518 3.482 19 O -0.527 6.527 20 C 0.105 3.895 21 N -0.712 5.712 22 C 0.562 3.438 23 O -0.541 6.541 24 C -0.134 4.134 25 C -0.060 4.060 26 C -0.131 4.131 27 C -0.095 4.095 28 C -0.127 4.127 29 C -0.083 4.083 30 H 0.018 0.982 31 H 0.051 0.949 32 H -0.004 1.004 33 H 0.253 0.747 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.413 0.587 45 H 0.136 0.864 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.131 0.869 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.794 -17.265 -4.543 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.317 5.317 3 C -0.384 4.384 4 H 0.083 0.917 5 C -0.192 4.192 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.208 1.208 11 C 0.018 3.982 12 C 0.010 3.990 13 H 0.096 0.904 14 C -0.153 4.153 15 C -0.173 4.173 16 C -0.027 4.027 17 N -0.342 5.342 18 C 0.305 3.695 19 O -0.404 6.404 20 C -0.022 4.022 21 N -0.367 5.367 22 C 0.349 3.651 23 O -0.420 6.420 24 C -0.137 4.137 25 C -0.079 4.079 26 C -0.149 4.149 27 C -0.113 4.113 28 C -0.145 4.145 29 C -0.102 4.102 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.253 0.747 45 H 0.154 0.846 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.746 -17.333 -4.441 22.563 hybrid contribution 0.402 1.397 0.103 1.457 sum 14.148 -15.936 -4.338 21.747 Atomic orbital electron populations 1.20819 0.82846 0.96993 0.97636 1.43729 1.01543 1.00364 1.86033 1.19115 1.02332 0.86901 1.30014 0.91714 1.25181 0.97909 0.98988 0.97157 1.70020 1.20911 1.28648 1.35695 0.86343 0.78943 0.83676 0.77606 1.21027 1.21662 1.20811 1.20984 0.96514 0.88765 0.91933 1.22672 0.89076 0.86161 1.01072 0.90424 1.22648 0.97029 0.97681 0.97975 1.22765 0.98575 0.98009 0.97956 1.22341 0.95615 0.90242 0.94545 1.48574 1.16415 1.15243 1.53979 1.19967 0.80729 0.90054 0.78714 1.90754 1.65844 1.37364 1.46405 1.21071 0.85257 0.95980 0.99900 1.45652 1.17742 1.13455 1.59871 1.18248 0.83967 0.83836 0.79013 1.90765 1.76108 1.25115 1.50008 1.19892 0.95260 0.95103 1.03486 1.21282 0.92640 0.98555 0.95417 1.21167 0.96697 0.97747 0.99283 1.21412 0.99411 0.92836 0.97657 1.21170 0.94118 0.99503 0.99675 1.21464 0.96772 0.96261 0.95680 0.96414 0.92986 0.98540 0.93705 0.94637 0.92700 0.90531 0.90070 0.90060 0.90915 0.90861 0.91132 0.88561 0.88286 0.74747 0.84614 0.85297 0.85535 0.85156 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 8.76 59.85 0.52 4.43 16 2 N -0.59 -15.00 2.80 -181.12 -0.51 -15.51 16 3 C -0.25 -7.13 9.59 -15.06 -0.14 -7.27 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 5 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 6 N -0.91 -26.81 10.92 55.49 0.61 -26.20 16 7 Si 0.90 22.34 29.56 -169.99 -5.02 17.32 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.15 3.14 5.15 -4.04 -0.02 3.12 16 12 C 0.11 2.02 3.05 -66.96 -0.20 1.81 16 13 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 14 C -0.12 -1.65 5.61 -24.89 -0.14 -1.79 16 15 C -0.14 -1.39 7.07 -24.70 -0.17 -1.57 16 16 C 0.10 0.99 6.63 -2.65 -0.02 0.97 16 17 N -0.61 -8.80 3.07 -163.16 -0.50 -9.30 16 18 C 0.52 7.87 7.62 -10.98 -0.08 7.79 16 19 O -0.53 -10.04 14.86 5.56 0.08 -9.95 16 20 C 0.11 1.26 5.26 -5.20 -0.03 1.24 16 21 N -0.71 -8.82 5.48 -62.43 -0.34 -9.16 16 22 C 0.56 7.23 7.77 -12.33 -0.10 7.14 16 23 O -0.54 -8.24 16.35 5.32 0.09 -8.16 16 24 C -0.13 -1.48 5.87 -104.97 -0.62 -2.10 16 25 C -0.06 -0.59 9.60 -39.19 -0.38 -0.96 16 26 C -0.13 -1.01 10.03 -39.64 -0.40 -1.40 16 27 C -0.09 -0.69 10.04 -39.49 -0.40 -1.08 16 28 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 29 C -0.08 -0.80 9.54 -39.19 -0.37 -1.17 16 30 H 0.02 0.46 7.75 -51.93 -0.40 0.06 16 31 H 0.05 1.36 7.05 -51.93 -0.37 0.99 16 32 H 0.00 -0.08 6.15 -51.93 -0.32 -0.40 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16 35 H 0.05 1.32 6.81 -51.93 -0.35 0.97 16 36 H 0.08 1.12 6.41 -51.93 -0.33 0.78 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.60 7.52 -51.93 -0.39 0.21 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.02 7.75 -51.93 -0.40 0.62 16 43 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.41 5.07 5.47 -40.82 -0.22 4.85 16 45 H 0.14 1.29 7.65 -52.49 -0.40 0.89 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 48 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 49 H 0.13 1.17 6.41 -52.49 -0.34 0.83 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -34.34 397.13 -9.93 -44.28 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.29 Total: 2.90 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -3.03 Total: 7.81 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.74 Total: -60.17 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.17 Total: -18.11 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.34 -9.93 -44.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674495475.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.780 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds