Wall clock time and date at job start Sat Apr 11 2020 07:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21283 * 120.00222 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99772 * 359.97438 * 3 2 1 6 6 C 1.50701 * 109.46837 * 180.02562 * 5 3 2 7 7 C 1.38356 * 119.85737 * 269.72691 * 6 5 3 8 8 C 1.37957 * 120.14769 * 179.72305 * 7 6 5 9 9 C 1.39580 * 119.85249 * 0.55217 * 8 7 6 10 10 C 1.47842 * 120.14460 * 179.69999 * 9 8 7 11 11 N 1.34771 * 120.00369 * 0.02793 * 10 9 8 12 12 O 1.21553 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.39580 * 119.70916 * 359.72327 * 9 8 7 14 14 C 1.37953 * 119.85411 * 0.02562 * 13 9 8 15 15 C 1.46498 * 120.00239 * 179.71805 * 2 1 3 16 16 H 1.08996 * 109.47313 * 180.02562 * 15 2 1 17 17 C 1.52999 * 109.47138 * 300.00351 * 15 2 1 18 18 N 1.46491 * 109.47212 * 304.99765 * 17 15 2 19 19 C 1.36939 * 120.00036 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99871 * 0.02562 * 19 18 17 21 21 C 1.38820 * 120.00047 * 179.97438 * 19 18 17 22 22 N 1.31613 * 119.99593 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99955 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46779 * 60.00253 * 23 21 19 25 25 H 1.48497 * 109.47086 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47272 * 300.00287 * 23 21 19 27 27 C 1.53000 * 109.46911 * 60.00146 * 15 2 1 28 28 C 1.52996 * 117.50136 * 248.74864 * 27 15 2 29 29 C 1.52998 * 117.50113 * 180.08487 * 27 15 2 30 30 H 1.08999 * 109.46892 * 90.00594 * 1 2 3 31 31 H 1.09000 * 109.46803 * 209.99767 * 1 2 3 32 32 H 1.09000 * 109.47214 * 330.00561 * 1 2 3 33 33 H 1.08999 * 109.47685 * 300.00183 * 5 3 2 34 34 H 1.08997 * 109.47517 * 60.00530 * 5 3 2 35 35 H 1.08004 * 119.92724 * 0.02562 * 7 6 5 36 36 H 1.07996 * 120.07591 * 180.24707 * 8 7 6 37 37 H 0.97004 * 120.00132 * 359.97438 * 11 10 9 38 38 H 0.96993 * 120.00709 * 179.97438 * 11 10 9 39 39 H 1.07994 * 120.07308 * 179.97438 * 13 9 8 40 40 H 1.07997 * 119.93077 * 179.97438 * 14 13 9 41 41 H 1.09001 * 109.46937 * 65.00085 * 17 15 2 42 42 H 1.09002 * 109.47161 * 184.99056 * 17 15 2 43 43 H 0.97005 * 120.00027 * 0.02562 * 18 17 15 44 44 H 0.96998 * 119.99561 * 180.02562 * 22 21 19 45 45 H 1.09000 * 115.54919 * 34.41628 * 27 15 2 46 46 H 1.09001 * 117.50144 * 359.97438 * 28 27 15 47 47 H 1.09006 * 117.50120 * 145.02075 * 28 27 15 48 48 H 1.09000 * 117.49997 * 214.98092 * 29 27 15 49 49 H 1.09004 * 117.49728 * 0.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3646 3.6177 -0.0011 7 6 2.8079 4.1455 1.1986 8 6 3.7087 5.1904 1.2051 9 6 4.1641 5.7227 -0.0021 10 6 5.1244 6.8468 -0.0026 11 7 5.5624 7.3594 1.1642 12 8 5.5189 7.3086 -1.0555 13 6 3.7086 5.1893 -1.2089 14 6 2.8118 4.1411 -1.2014 15 6 2.1976 -1.2687 0.0062 16 1 3.2692 -1.0695 0.0057 17 6 1.8280 -2.0649 1.2594 18 7 2.0707 -1.2444 2.4485 19 6 1.8102 -1.7502 3.6941 20 1 1.4263 -2.7541 3.7998 21 6 2.0408 -0.9729 4.8209 22 7 2.5091 0.2503 4.6920 23 14 1.6862 -1.6631 6.5202 24 1 2.5144 -2.8751 6.7448 25 1 2.0135 -0.6419 7.5474 26 1 0.2483 -2.0208 6.6190 27 6 1.8280 -2.0771 -1.2391 28 6 1.0116 -3.3549 -1.0353 29 6 2.4915 -3.4442 -1.4165 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 0.7590 2.5298 -0.8908 34 1 0.7584 2.5303 0.8891 35 1 2.4516 3.7354 2.1320 36 1 4.0569 5.5988 2.1422 37 1 5.2474 6.9912 2.0045 38 1 6.1927 8.0967 1.1640 39 1 4.0568 5.5969 -2.1464 40 1 2.4582 3.7278 -2.1344 41 1 0.7742 -2.3405 1.2170 42 1 2.4376 -2.9670 1.3096 43 1 2.4152 -0.3426 2.3534 44 1 2.6705 0.7933 5.4794 45 1 1.6318 -1.4925 -2.1379 46 1 0.7382 -3.6199 -0.0140 47 1 0.2786 -3.6112 -1.8002 48 1 2.7314 -3.7593 -2.4320 49 1 3.1910 -3.7680 -0.6457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676284495.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:04 Heat of formation + Delta-G solvation = -2.527362 kcal Electronic energy + Delta-G solvation = -30355.705706 eV Core-core repulsion = 26284.060810 eV Total energy + Delta-G solvation = -4071.644896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33743 -39.78344 -38.42667 -37.50129 -34.96391 -34.06667 -34.00300 -32.66793 -31.12491 -30.87292 -28.81309 -27.46170 -26.32316 -24.39691 -23.15340 -22.65213 -22.55827 -21.92266 -20.63735 -19.76757 -18.51778 -18.23159 -17.12874 -16.95993 -16.90349 -16.29008 -15.56478 -15.41349 -15.07841 -14.87946 -14.76938 -14.66872 -14.44714 -13.97014 -13.63154 -13.33760 -13.25892 -13.22158 -12.92800 -12.76854 -12.38591 -12.23832 -11.99394 -11.87243 -11.60311 -11.46867 -11.29633 -11.05586 -10.98269 -10.81545 -10.76277 -10.33744 -10.16495 -10.14780 -9.87360 -9.79941 -9.72482 -9.43535 -8.93660 -8.89237 -8.70344 -8.25582 -6.93184 -5.77437 -3.06238 0.81698 1.44240 2.77653 3.00198 3.28666 3.39241 3.41013 3.45971 3.46427 3.88869 3.98564 4.55494 4.60532 4.74474 4.83805 4.87056 4.91707 4.97787 5.09277 5.12741 5.22375 5.32959 5.35987 5.43659 5.53083 5.56538 5.59535 5.64053 5.74663 5.83475 5.84179 5.92162 5.97608 6.04606 6.06911 6.25450 6.27670 6.28452 6.31899 6.36995 6.46813 6.58480 6.61460 6.67794 6.90301 6.97468 7.17861 7.66065 7.74007 8.11309 8.40483 8.55266 9.52219 10.10384 10.46229 11.44679 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008706 B = 0.003299 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.239851 B = 8486.310851 C =10963.192439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.595 5.595 3 C 0.521 3.479 4 O -0.531 6.531 5 C -0.106 4.106 6 C -0.029 4.029 7 C -0.105 4.105 8 C -0.082 4.082 9 C -0.149 4.149 10 C 0.567 3.433 11 N -0.852 5.852 12 O -0.547 6.547 13 C -0.060 4.060 14 C -0.116 4.116 15 C 0.162 3.838 16 H 0.103 0.897 17 C 0.143 3.857 18 N -0.727 5.727 19 C -0.241 4.241 20 H 0.068 0.932 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C -0.157 4.157 28 C -0.183 4.183 29 C -0.174 4.174 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.403 0.597 38 H 0.403 0.597 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.386 0.614 44 H 0.254 0.746 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 6.750 -11.646 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.328 5.328 3 C 0.308 3.692 4 O -0.407 6.407 5 C -0.146 4.146 6 C -0.030 4.030 7 C -0.123 4.123 8 C -0.100 4.100 9 C -0.152 4.152 10 C 0.354 3.646 11 N -0.416 5.416 12 O -0.426 6.426 13 C -0.079 4.079 14 C -0.134 4.134 15 C 0.058 3.942 16 H 0.121 0.879 17 C 0.014 3.986 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.086 0.914 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.214 1.214 27 C -0.176 4.176 28 C -0.220 4.220 29 C -0.212 4.212 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.232 0.768 38 H 0.233 0.767 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.220 0.780 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.362 6.829 -12.255 14.427 hybrid contribution -0.067 -0.112 1.544 1.550 sum -3.430 6.717 -10.711 13.100 Atomic orbital electron populations 1.21702 0.79820 1.03928 1.00588 1.47589 1.06798 1.05357 1.73041 1.20269 0.87979 0.84802 0.76112 1.90727 1.13744 1.87034 1.49148 1.20787 0.97693 0.90780 1.05347 1.19579 0.95760 0.94203 0.93411 1.21105 0.97086 0.95717 0.98392 1.21211 0.96186 0.96043 0.96588 1.19794 1.01487 0.99152 0.94790 1.18347 0.80349 0.82267 0.83603 1.43769 1.49785 1.39342 1.08724 1.90788 1.58703 1.61794 1.31296 1.21131 0.94681 0.94602 0.97449 1.20942 0.98173 0.96679 0.97643 1.20806 0.97937 0.82460 0.92969 0.87923 1.21112 0.97682 0.93564 0.86204 1.42287 1.78777 1.15729 1.00330 1.19153 1.36348 0.98012 0.83691 0.91415 1.24712 1.01997 0.96330 0.97653 1.69669 1.50930 1.08606 1.28527 0.86305 0.77873 0.77782 0.84416 1.21327 1.21712 1.21355 1.22568 1.05510 0.90043 0.99519 1.23188 0.93980 1.01528 1.03327 1.22955 0.96136 0.99635 1.02445 0.93324 0.90374 0.91331 0.88128 0.87261 0.84620 0.85693 0.76759 0.76650 0.84917 0.85607 0.95641 0.95561 0.77963 0.93575 0.88002 0.87543 0.89321 0.89090 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 9.61 59.85 0.58 1.59 16 2 N -0.60 -9.27 2.25 -173.93 -0.39 -9.66 16 3 C 0.52 8.75 7.35 -10.99 -0.08 8.67 16 4 O -0.53 -11.12 15.36 5.55 0.09 -11.03 16 5 C -0.11 -1.35 4.38 -29.03 -0.13 -1.48 16 6 C -0.03 -0.39 4.38 -104.53 -0.46 -0.85 16 7 C -0.11 -1.47 9.68 -39.64 -0.38 -1.86 16 8 C -0.08 -1.01 9.54 -39.18 -0.37 -1.39 16 9 C -0.15 -1.97 5.87 -104.97 -0.62 -2.59 16 10 C 0.57 7.42 8.05 -12.33 -0.10 7.32 16 11 N -0.85 -7.51 8.82 30.53 0.27 -7.24 16 12 O -0.55 -8.99 17.18 5.32 0.09 -8.90 16 13 C -0.06 -0.79 9.60 -39.19 -0.38 -1.17 16 14 C -0.12 -1.49 9.68 -39.64 -0.38 -1.87 16 15 C 0.16 2.71 2.59 -67.93 -0.18 2.53 16 16 H 0.10 2.03 6.90 -51.93 -0.36 1.67 16 17 C 0.14 2.77 4.14 -4.05 -0.02 2.76 16 18 N -0.73 -18.10 5.43 -59.91 -0.33 -18.42 16 19 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 20 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 23 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C -0.16 -2.06 5.48 -90.62 -0.50 -2.55 16 28 C -0.18 -2.14 9.59 -26.69 -0.26 -2.40 16 29 C -0.17 -2.09 9.94 -26.69 -0.27 -2.35 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.05 6.53 -51.93 -0.34 0.71 16 32 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 33 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.11 1.33 7.34 -51.93 -0.38 0.94 16 35 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 36 H 0.13 1.17 6.41 -52.49 -0.34 0.83 16 37 H 0.40 2.64 6.87 -40.82 -0.28 2.36 16 38 H 0.40 2.87 8.93 -40.82 -0.36 2.51 16 39 H 0.13 1.67 7.65 -52.49 -0.40 1.27 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.03 0.48 5.34 -51.93 -0.28 0.20 16 42 H 0.03 0.53 7.44 -51.93 -0.39 0.14 16 43 H 0.39 10.42 7.05 -40.82 -0.29 10.13 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.11 1.37 5.80 -51.93 -0.30 1.07 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.10 1.26 7.65 -51.93 -0.40 0.86 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -35.85 401.56 -9.24 -45.09 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -6.95 Total: 16.64 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.78 Total: -2.78 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.28 Total: -62.05 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.18 Total: -19.93 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.85 -9.24 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676284495.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.564 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds