Wall clock time and date at job start Sat Apr 11 2020 07:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.09000 * 112.74497 * 284.22490 * 4 3 2 6 6 C 1.53513 * 113.47555 * 153.38286 * 4 3 2 7 7 C 1.53512 * 83.57430 * 219.20603 * 6 4 3 8 8 N 1.47475 * 113.47861 * 55.00171 * 4 3 2 9 9 C 1.46897 * 110.99794 * 253.46867 * 8 4 3 10 10 C 1.50705 * 109.47232 * 169.99930 * 9 8 4 11 11 O 1.21295 * 119.99527 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00218 * 180.02562 * 10 9 8 13 13 C 1.37094 * 120.00113 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99976 * 359.97438 * 13 12 10 15 15 C 1.38954 * 120.00027 * 179.97438 * 13 12 10 16 16 N 1.31410 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99928 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46733 * 89.99980 * 17 15 13 19 19 H 1.48497 * 109.47253 * 209.99800 * 17 15 13 20 20 H 1.48500 * 109.47358 * 330.00196 * 17 15 13 21 21 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 22 22 O 1.21279 * 120.00410 * 179.97438 * 21 2 1 23 23 C 1.50703 * 119.99541 * 359.97438 * 21 2 1 24 24 C 1.50703 * 109.46605 * 180.02562 * 23 21 2 25 25 C 1.38233 * 119.99941 * 269.72408 * 24 23 21 26 26 C 1.38240 * 120.00034 * 179.76993 * 25 24 23 27 27 C 1.38234 * 119.99492 * 0.50909 * 26 25 24 28 28 C 1.38234 * 120.00348 * 359.74370 * 27 26 25 29 29 C 1.38228 * 119.99958 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 31 31 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 32 32 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 33 33 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 34 34 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 35 35 H 1.08998 * 114.16902 * 332.85676 * 6 4 3 36 36 H 1.09002 * 114.16976 * 105.55997 * 6 4 3 37 37 H 1.08999 * 113.47309 * 271.25390 * 7 6 4 38 38 H 1.08998 * 113.52671 * 140.79882 * 7 6 4 39 39 H 1.08998 * 109.47623 * 290.00090 * 9 8 4 40 40 H 1.09001 * 109.47632 * 50.00221 * 9 8 4 41 41 H 0.97006 * 120.00030 * 359.97438 * 12 10 9 42 42 H 0.97005 * 119.99670 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.47057 * 299.99739 * 23 21 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 23 21 2 45 45 H 1.08004 * 120.00424 * 0.02562 * 25 24 23 46 46 H 1.07997 * 120.00423 * 180.23132 * 26 25 24 47 47 H 1.08004 * 119.99795 * 179.72539 * 27 26 25 48 48 H 1.07999 * 119.99907 * 179.97438 * 28 27 26 49 49 H 1.08000 * 120.00551 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5625 2.1175 1.9222 6 6 3.6943 2.5993 1.5994 7 6 3.8978 1.7907 2.8883 8 7 3.1444 0.6924 2.2549 9 6 2.2220 0.0666 3.2117 10 6 2.8901 -1.1253 3.8475 11 8 4.0234 -1.4237 3.5346 12 7 2.2284 -1.8597 4.7636 13 6 2.8364 -2.9436 5.3423 14 1 3.8455 -3.2093 5.0638 15 6 2.1544 -3.7004 6.2872 16 7 0.9268 -3.3768 6.6265 17 14 2.9826 -5.1778 7.0752 18 1 3.7001 -4.7470 8.3020 19 1 1.9555 -6.1892 7.4319 20 1 3.9506 -5.7715 6.1183 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 6 2.3647 -3.6177 -0.0005 25 6 2.8095 -4.1468 -1.1976 26 6 3.7115 -5.1943 -1.1977 27 6 4.1606 -5.7196 -0.0005 28 6 3.7118 -5.1940 1.1966 29 6 2.8135 -4.1434 1.1966 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8900 0.5139 33 1 3.1499 1.1384 -0.5139 34 1 1.6084 2.0284 -0.5139 35 1 4.4607 2.4330 0.8424 36 1 3.4706 3.6533 1.7644 37 1 3.3941 2.2200 3.7543 38 1 4.9407 1.5438 3.0869 39 1 1.9547 0.7880 3.9839 40 1 1.3216 -0.2573 2.6898 41 1 1.3222 -1.6208 5.0140 42 1 0.4505 -3.9054 7.2859 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 2.4555 -3.7390 -2.1330 46 1 4.0619 -5.6052 -2.1330 47 1 4.8619 -6.5410 -0.0005 48 1 4.0624 -5.6048 2.1319 49 1 2.4625 -3.7329 2.1319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691048753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:21 Heat of formation + Delta-G solvation = 6.701140 kcal Electronic energy + Delta-G solvation = -32012.047039 eV Core-core repulsion = 27940.802321 eV Total energy + Delta-G solvation = -4071.244718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45866 -39.37428 -38.25936 -37.59453 -35.15632 -33.80545 -32.61474 -31.26324 -30.59792 -30.42670 -29.15961 -27.22344 -26.12513 -25.68851 -23.63909 -23.22361 -22.15388 -21.15022 -19.51544 -19.19305 -18.87426 -17.81395 -16.79022 -16.51751 -16.01620 -15.98702 -15.63835 -15.43144 -14.93138 -14.65975 -14.45733 -14.29443 -13.87648 -13.71156 -13.49407 -13.06849 -13.01579 -12.85338 -12.79721 -12.51016 -12.39951 -12.28806 -11.98679 -11.80679 -11.57761 -11.45151 -11.41103 -11.18008 -10.98139 -10.75506 -10.71982 -10.55549 -10.41015 -10.35345 -10.14845 -9.42075 -9.36201 -8.73538 -8.44077 -8.29998 -8.28342 -8.02136 -7.87432 -6.35477 -3.75255 1.73551 1.88275 3.08199 3.20854 3.21110 3.29102 3.35003 4.01237 4.08762 4.22182 4.31435 4.58724 4.85437 4.91362 4.96868 5.09837 5.12809 5.15288 5.19579 5.27428 5.36668 5.38379 5.38864 5.43903 5.48936 5.56432 5.57378 5.60659 5.73119 5.75753 5.77445 5.84530 5.94694 5.98509 6.09271 6.09869 6.30909 6.37860 6.40688 6.50822 6.61891 6.80253 6.83896 6.99673 7.07667 7.37818 7.44527 7.61121 7.63731 8.13900 8.65014 8.71267 9.26877 9.63154 10.17877 10.82772 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007730 B = 0.005289 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.398987 B = 5293.169995 C = 7686.641882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.139 3.861 4 C 0.001 3.999 5 H 0.071 0.929 6 C -0.135 4.135 7 C 0.001 3.999 8 N -0.410 5.410 9 C 0.011 3.989 10 C 0.450 3.550 11 O -0.558 6.558 12 N -0.574 5.574 13 C -0.291 4.291 14 H 0.101 0.899 15 C 0.022 3.978 16 N -0.906 5.906 17 Si 0.923 3.077 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.515 3.485 22 O -0.486 6.486 23 C -0.099 4.099 24 C -0.068 4.068 25 C -0.111 4.111 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.112 4.112 29 C -0.079 4.079 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.388 0.612 42 H 0.269 0.731 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.121 0.879 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 7.557 -14.502 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.361 5.361 3 C 0.016 3.984 4 C -0.110 4.110 5 H 0.089 0.911 6 C -0.173 4.173 7 C -0.128 4.128 8 N -0.132 5.132 9 C -0.122 4.122 10 C 0.234 3.766 11 O -0.439 6.439 12 N -0.212 5.212 13 C -0.421 4.421 14 H 0.119 0.881 15 C -0.179 4.179 16 N -0.548 5.548 17 Si 0.751 3.249 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.302 3.698 22 O -0.357 6.357 23 C -0.139 4.139 24 C -0.068 4.068 25 C -0.130 4.130 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.130 4.130 29 C -0.097 4.097 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.221 0.779 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.139 0.861 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.244 6.631 -14.894 16.623 hybrid contribution -1.016 0.077 1.394 1.727 sum -4.260 6.708 -13.500 15.666 Atomic orbital electron populations 1.21762 0.80330 1.03119 1.01325 1.47722 1.06158 1.06006 1.76178 1.21344 0.97767 0.84396 0.94915 1.23893 0.96654 0.93732 0.96747 0.91101 1.23136 0.97650 0.97558 0.98976 1.23750 1.01778 0.91720 0.95522 1.68941 1.14521 1.16164 1.13576 1.22497 0.96360 0.97756 0.95561 1.19673 0.87853 0.85703 0.83346 1.90577 1.18515 1.71127 1.63690 1.41869 1.16040 1.26647 1.36686 1.19639 1.00210 1.03562 1.18654 0.88139 1.25176 0.95733 0.99426 0.97591 1.69608 1.10799 1.40808 1.33579 0.85953 0.78683 0.80806 0.79469 1.20574 1.21008 1.19416 1.20344 0.88312 0.84428 0.76711 1.90783 1.13252 1.86447 1.45211 1.20677 0.97711 0.91317 1.04158 1.19224 0.98270 0.95742 0.93576 1.20817 0.98312 0.97002 0.96825 1.20937 0.98571 0.97651 0.97633 1.21083 1.00164 1.00239 0.92739 1.21160 0.97120 0.96719 0.98007 1.21172 0.95844 0.94888 0.97840 0.92937 0.91458 0.91082 0.89436 0.90923 0.88803 0.91026 0.92013 0.89576 0.93063 0.90391 0.77887 0.92104 0.88429 0.88916 0.87001 0.86752 0.86683 0.86056 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.24 59.85 0.61 1.29 16 2 N -0.62 -7.88 2.63 -181.57 -0.48 -8.36 16 3 C 0.14 1.65 5.58 -4.04 -0.02 1.63 16 4 C 0.00 0.01 3.34 -71.44 -0.24 -0.23 16 5 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 6 C -0.13 -1.59 8.00 -26.20 -0.21 -1.80 16 7 C 0.00 0.02 7.71 -7.55 -0.06 -0.04 16 8 N -0.41 -7.21 4.42 -237.96 -1.05 -8.26 16 9 C 0.01 0.20 5.30 -4.98 -0.03 0.17 16 10 C 0.45 10.89 7.85 -10.99 -0.09 10.80 16 11 O -0.56 -15.85 16.01 5.54 0.09 -15.76 16 12 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 13 C -0.29 -8.09 9.68 -14.93 -0.14 -8.23 16 14 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.91 -24.56 13.05 55.50 0.72 -23.84 16 17 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.52 8.40 7.15 -10.98 -0.08 8.33 16 22 O -0.49 -10.27 15.05 5.56 0.08 -10.18 16 23 C -0.10 -1.42 4.38 -29.03 -0.13 -1.55 16 24 C -0.07 -1.16 4.37 -104.62 -0.46 -1.61 16 25 C -0.11 -1.71 9.70 -39.58 -0.38 -2.09 16 26 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 27 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 28 C -0.11 -2.07 10.05 -39.59 -0.40 -2.47 16 29 C -0.08 -1.57 9.70 -39.59 -0.38 -1.95 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.07 0.61 6.44 -51.93 -0.33 0.27 16 33 H 0.09 1.23 7.15 -51.93 -0.37 0.85 16 34 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.09 1.15 7.94 -51.93 -0.41 0.73 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.88 7.42 -51.93 -0.39 0.49 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.05 0.87 7.30 -51.93 -0.38 0.50 16 40 H 0.08 1.34 7.89 -51.93 -0.41 0.93 16 41 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.10 1.37 7.34 -51.93 -0.38 0.99 16 44 H 0.09 1.01 8.05 -51.93 -0.42 0.60 16 45 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 46 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 47 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 48 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 49 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 407.64 15.07 6.14 6.14 Total: -1.00 -35.46 407.64 -10.02 -45.49 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -7.56 Total: 15.05 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.89 Total: -1.96 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.86 Total: -55.05 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: 0.17 Total: -25.95 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.46 -10.02 -45.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691048753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.186 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds