Wall clock time and date at job start Sat Apr 11 2020 07:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.09000 * 112.74497 * 284.22490 * 4 3 2 6 6 C 1.53513 * 113.47555 * 153.38286 * 4 3 2 7 7 C 1.53512 * 83.57430 * 219.20603 * 6 4 3 8 8 N 1.47475 * 113.47861 * 55.00171 * 4 3 2 9 9 C 1.46897 * 110.99794 * 253.46867 * 8 4 3 10 10 C 1.50705 * 109.47232 * 169.99930 * 9 8 4 11 11 O 1.21295 * 119.99527 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00218 * 180.02562 * 10 9 8 13 13 C 1.37094 * 120.00113 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99976 * 359.97438 * 13 12 10 15 15 C 1.38954 * 120.00027 * 179.97438 * 13 12 10 16 16 N 1.31410 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99928 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46733 * 89.99980 * 17 15 13 19 19 H 1.48497 * 109.47253 * 209.99800 * 17 15 13 20 20 H 1.48500 * 109.47358 * 330.00196 * 17 15 13 21 21 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 22 22 O 1.21279 * 120.00410 * 179.97438 * 21 2 1 23 23 C 1.50703 * 119.99541 * 359.97438 * 21 2 1 24 24 C 1.50703 * 109.46605 * 180.02562 * 23 21 2 25 25 C 1.38233 * 119.99941 * 269.72408 * 24 23 21 26 26 C 1.38240 * 120.00034 * 179.76993 * 25 24 23 27 27 C 1.38234 * 119.99492 * 0.50909 * 26 25 24 28 28 C 1.38234 * 120.00348 * 359.74370 * 27 26 25 29 29 C 1.38228 * 119.99958 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 31 31 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 32 32 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 33 33 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 34 34 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 35 35 H 1.08998 * 114.16902 * 332.85676 * 6 4 3 36 36 H 1.09002 * 114.16976 * 105.55997 * 6 4 3 37 37 H 1.08999 * 113.47309 * 271.25390 * 7 6 4 38 38 H 1.08998 * 113.52671 * 140.79882 * 7 6 4 39 39 H 1.08998 * 109.47623 * 290.00090 * 9 8 4 40 40 H 1.09001 * 109.47632 * 50.00221 * 9 8 4 41 41 H 0.97006 * 120.00030 * 359.97438 * 12 10 9 42 42 H 0.97005 * 119.99670 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.47057 * 299.99739 * 23 21 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 23 21 2 45 45 H 1.08004 * 120.00424 * 0.02562 * 25 24 23 46 46 H 1.07997 * 120.00423 * 180.23132 * 26 25 24 47 47 H 1.08004 * 119.99795 * 179.72539 * 27 26 25 48 48 H 1.07999 * 119.99907 * 179.97438 * 28 27 26 49 49 H 1.08000 * 120.00551 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5625 2.1175 1.9222 6 6 3.6943 2.5993 1.5994 7 6 3.8978 1.7907 2.8883 8 7 3.1444 0.6924 2.2549 9 6 2.2220 0.0666 3.2117 10 6 2.8901 -1.1253 3.8475 11 8 4.0234 -1.4237 3.5346 12 7 2.2284 -1.8597 4.7636 13 6 2.8364 -2.9436 5.3423 14 1 3.8455 -3.2093 5.0638 15 6 2.1544 -3.7004 6.2872 16 7 0.9268 -3.3768 6.6265 17 14 2.9826 -5.1778 7.0752 18 1 3.7001 -4.7470 8.3020 19 1 1.9555 -6.1892 7.4319 20 1 3.9506 -5.7715 6.1183 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 6 2.3647 -3.6177 -0.0005 25 6 2.8095 -4.1468 -1.1976 26 6 3.7115 -5.1943 -1.1977 27 6 4.1606 -5.7196 -0.0005 28 6 3.7118 -5.1940 1.1966 29 6 2.8135 -4.1434 1.1966 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8900 0.5139 33 1 3.1499 1.1384 -0.5139 34 1 1.6084 2.0284 -0.5139 35 1 4.4607 2.4330 0.8424 36 1 3.4706 3.6533 1.7644 37 1 3.3941 2.2200 3.7543 38 1 4.9407 1.5438 3.0869 39 1 1.9547 0.7880 3.9839 40 1 1.3216 -0.2573 2.6898 41 1 1.3222 -1.6208 5.0140 42 1 0.4505 -3.9054 7.2859 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 2.4555 -3.7390 -2.1330 46 1 4.0619 -5.6052 -2.1330 47 1 4.8619 -6.5410 -0.0005 48 1 4.0624 -5.6048 2.1319 49 1 2.4625 -3.7329 2.1319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691048753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:20 Heat of formation + Delta-G solvation = -17.895188 kcal Electronic energy + Delta-G solvation = -32013.113616 eV Core-core repulsion = 27940.802321 eV Total energy + Delta-G solvation = -4072.311295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64769 -40.64681 -39.71476 -39.29616 -36.27098 -35.89756 -33.84281 -33.28765 -32.03931 -31.74023 -30.25584 -28.30761 -27.52679 -27.03084 -25.33032 -24.33241 -23.47574 -22.37975 -21.07638 -20.60563 -20.00242 -19.87902 -17.91660 -17.79283 -17.63034 -17.15255 -16.94638 -16.77096 -16.42358 -16.25383 -15.91493 -15.69991 -15.59137 -15.10232 -14.90720 -14.28629 -14.27041 -14.09012 -14.04145 -13.85833 -13.66736 -13.54662 -13.35079 -13.10336 -12.98751 -12.88975 -12.67658 -12.52333 -12.43614 -12.26798 -12.17979 -11.97046 -11.92316 -11.86037 -11.53554 -11.46991 -10.64062 -10.33919 -9.98064 -9.78048 -9.68956 -9.57592 -9.27990 -8.46240 -5.92955 0.44833 0.54216 1.32842 1.35902 1.48231 1.91045 2.09396 2.19713 2.27259 2.87154 2.96356 3.19698 3.42630 3.58936 3.73262 3.86764 3.93861 3.95613 4.14940 4.16205 4.23987 4.26887 4.29113 4.33799 4.36067 4.41228 4.48893 4.51201 4.56100 4.61971 4.64601 4.77332 4.80363 4.84920 4.97549 5.00669 5.03570 5.15637 5.16199 5.27182 5.40323 5.48004 5.56018 5.64606 5.73087 5.82175 5.96241 6.15282 6.21153 6.58526 6.63871 7.16277 7.50527 7.58858 8.18609 8.71478 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007730 B = 0.005289 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.398987 B = 5293.169995 C = 7686.641882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.618 5.618 3 C 0.137 3.863 4 C 0.007 3.993 5 H 0.099 0.901 6 C -0.111 4.111 7 C -0.010 4.010 8 N -0.452 5.452 9 C 0.028 3.972 10 C 0.446 3.554 11 O -0.608 6.608 12 N -0.577 5.577 13 C -0.320 4.320 14 H 0.068 0.932 15 C -0.009 4.009 16 N -0.919 5.919 17 Si 0.981 3.019 18 H -0.271 1.271 19 H -0.267 1.267 20 H -0.278 1.278 21 C 0.511 3.489 22 O -0.547 6.547 23 C -0.096 4.096 24 C -0.075 4.075 25 C -0.113 4.113 26 C -0.123 4.123 27 C -0.127 4.127 28 C -0.140 4.140 29 C -0.114 4.114 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.393 0.607 42 H 0.276 0.724 43 H 0.093 0.907 44 H 0.135 0.865 45 H 0.146 0.854 46 H 0.155 0.845 47 H 0.142 0.858 48 H 0.105 0.895 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.165 8.946 -16.773 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.352 5.352 3 C 0.014 3.986 4 C -0.103 4.103 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.140 4.140 8 N -0.174 5.174 9 C -0.104 4.104 10 C 0.233 3.767 11 O -0.492 6.492 12 N -0.216 5.216 13 C -0.450 4.450 14 H 0.086 0.914 15 C -0.208 4.208 16 N -0.561 5.561 17 Si 0.805 3.195 18 H -0.197 1.197 19 H -0.192 1.192 20 H -0.203 1.203 21 C 0.298 3.702 22 O -0.423 6.423 23 C -0.136 4.136 24 C -0.075 4.075 25 C -0.130 4.130 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.158 4.158 29 C -0.132 4.132 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.226 0.774 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.153 0.847 45 H 0.164 0.836 46 H 0.173 0.827 47 H 0.160 0.840 48 H 0.123 0.877 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.573 8.065 -17.158 19.761 hybrid contribution -0.319 -0.321 2.057 2.106 sum -5.891 7.744 -15.101 17.964 Atomic orbital electron populations 1.22075 0.77479 1.04213 1.03472 1.47784 1.07912 1.05169 1.74339 1.21484 0.97576 0.85045 0.94498 1.24028 0.97682 0.92066 0.96500 0.88328 1.23026 0.96753 0.99119 0.96034 1.23851 0.99850 0.92265 0.97987 1.68934 1.15866 1.18440 1.14188 1.22303 0.96277 0.95515 0.96261 1.20744 0.87296 0.86524 0.82141 1.90541 1.20982 1.72702 1.64940 1.41885 1.16143 1.26461 1.37124 1.19458 0.99573 1.05616 1.20367 0.91381 1.25849 0.96282 1.01345 0.97344 1.69655 1.11280 1.41542 1.33628 0.85111 0.78033 0.77970 0.78393 1.19698 1.19197 1.20278 1.20631 0.87721 0.85852 0.75962 1.90759 1.15759 1.87397 1.48403 1.20734 0.97259 0.89724 1.05871 1.19515 0.98593 0.96285 0.93127 1.21253 0.97825 0.96727 0.97244 1.21446 0.97273 0.96748 0.98617 1.21375 1.00290 1.00777 0.92019 1.21223 0.98140 0.97511 0.98959 1.20976 0.98175 0.96700 0.97390 0.90178 0.89195 0.91293 0.92128 0.86268 0.89733 0.87101 0.90609 0.93051 0.91039 0.88915 0.77366 0.91448 0.88854 0.84748 0.83624 0.82745 0.83977 0.87684 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.24 127.77 1.31 2.24 16 2 N -0.62 -14.17 2.63 -846.74 -2.22 -16.40 16 3 C 0.14 2.88 5.58 86.38 0.48 3.36 16 4 C 0.01 0.17 3.34 42.19 0.14 0.31 16 5 H 0.10 1.77 7.91 -2.39 -0.02 1.75 16 6 C -0.11 -2.39 8.00 30.94 0.25 -2.14 16 7 C -0.01 -0.32 7.71 83.57 0.64 0.32 16 8 N -0.45 -15.97 4.42 -906.78 -4.01 -19.98 16 9 C 0.03 1.07 5.30 85.56 0.45 1.52 16 10 C 0.45 22.92 7.85 87.66 0.69 23.61 16 11 O -0.61 -37.36 16.01 -3.07 -0.05 -37.41 16 12 N -0.58 -30.96 5.29 -306.98 -1.62 -32.58 16 13 C -0.32 -18.97 9.68 84.04 0.81 -18.16 16 14 H 0.07 4.41 7.16 -2.91 -0.02 4.39 16 15 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 16 N -0.92 -50.54 13.05 21.66 0.28 -50.25 16 17 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 C 0.51 16.53 7.15 87.66 0.63 17.15 16 22 O -0.55 -23.97 15.05 -3.02 -0.05 -24.02 16 23 C -0.10 -2.74 4.38 29.10 0.13 -2.61 16 24 C -0.07 -2.63 4.37 -19.86 -0.09 -2.71 16 25 C -0.11 -3.30 9.70 22.27 0.22 -3.08 16 26 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16 27 C -0.13 -4.05 10.05 22.27 0.22 -3.82 16 28 C -0.14 -5.64 10.05 22.27 0.22 -5.42 16 29 C -0.11 -4.93 9.70 22.27 0.22 -4.71 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 32 H 0.07 0.98 6.44 -2.38 -0.02 0.97 16 33 H 0.06 1.64 7.15 -2.39 -0.02 1.62 16 34 H 0.12 1.42 8.07 -2.38 -0.02 1.40 16 35 H 0.08 1.99 7.94 -2.39 -0.02 1.97 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 2.08 7.42 -2.39 -0.02 2.07 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 2.37 7.30 -2.39 -0.02 2.35 16 40 H 0.09 3.14 7.89 -2.39 -0.02 3.12 16 41 H 0.39 19.92 7.90 -92.70 -0.73 19.19 16 42 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 43 H 0.09 2.70 7.34 -2.39 -0.02 2.68 16 44 H 0.13 2.57 8.05 -2.39 -0.02 2.55 16 45 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 46 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 47 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 48 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 49 H 0.08 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -86.29 407.64 1.60 -84.69 By element: Atomic # 1 Polarization: 46.12 SS G_CDS: 0.22 Total: 46.34 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 7.02 Total: 2.64 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -7.58 Total: -119.21 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -0.09 Total: -61.42 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -86.29 1.60 -84.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691048753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.798 kcal (2) G-P(sol) polarization free energy of solvation -86.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds