Wall clock time and date at job start Sat Apr 11 2020 07:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00344 * 2 1 4 4 H 1.08000 * 119.99900 * 204.76392 * 3 2 1 5 5 C 1.38807 * 120.00047 * 24.76166 * 3 2 1 6 6 N 1.31622 * 119.99982 * 6.27529 * 5 3 2 7 7 Si 1.86803 * 120.00258 * 186.27516 * 5 3 2 8 8 H 1.48498 * 109.47242 * 59.99943 * 7 5 3 9 9 H 1.48502 * 109.46994 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46849 * 300.00004 * 7 5 3 11 11 C 1.46504 * 119.99836 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47298 * 270.00088 * 11 2 1 13 13 O 1.42891 * 109.47095 * 64.99799 * 12 11 2 14 14 C 1.42901 * 113.99871 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47006 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47356 * 65.00080 * 15 14 13 17 17 C 1.46507 * 120.00051 * 270.00018 * 16 15 14 18 18 C 1.34776 * 120.00341 * 89.99789 * 16 15 14 19 19 O 1.21649 * 119.99870 * 0.85624 * 18 16 15 20 20 C 1.47062 * 120.00336 * 180.85305 * 18 16 15 21 21 C 1.35860 * 125.43300 * 168.03356 * 20 18 16 22 22 C 1.41584 * 107.73020 * 179.97438 * 21 20 18 23 23 C 1.40103 * 133.37632 * 179.97438 * 22 21 20 24 24 C 1.36447 * 119.82542 * 180.02562 * 23 22 21 25 25 C 1.38936 * 120.61697 * 359.97403 * 24 23 22 26 26 C 1.37674 * 120.65214 * 0.03455 * 25 24 23 27 27 C 1.39233 * 119.80722 * 359.97438 * 26 25 24 28 28 N 1.37477 * 133.18208 * 179.97438 * 27 26 25 29 29 H 0.97002 * 125.60973 * 0.02562 * 28 27 26 30 30 H 1.09003 * 109.46749 * 275.04419 * 1 2 3 31 31 H 1.08999 * 109.47280 * 35.03732 * 1 2 3 32 32 H 1.08999 * 109.47803 * 155.04317 * 1 2 3 33 33 H 0.97003 * 119.99908 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46877 * 149.99856 * 11 2 1 35 35 H 1.09003 * 109.46880 * 30.00153 * 11 2 1 36 36 H 1.08997 * 109.46536 * 304.99747 * 12 11 2 37 37 H 1.08995 * 109.47196 * 185.00243 * 12 11 2 38 38 H 1.09001 * 109.46933 * 60.00195 * 14 13 12 39 39 H 1.09001 * 109.47162 * 299.99817 * 14 13 12 40 40 H 1.09002 * 109.47452 * 304.99574 * 15 14 13 41 41 H 1.09004 * 109.46891 * 184.99824 * 15 14 13 42 42 H 1.09002 * 109.46709 * 263.46351 * 17 16 15 43 43 H 1.08995 * 109.46642 * 23.46173 * 17 16 15 44 44 H 1.08993 * 109.47328 * 143.46706 * 17 16 15 45 45 H 1.08007 * 126.13522 * 359.94503 * 21 20 18 46 46 H 1.07995 * 120.08812 * 0.06381 * 23 22 21 47 47 H 1.08000 * 119.68513 * 179.97438 * 24 23 22 48 48 H 1.08000 * 119.67458 * 180.02562 * 25 24 23 49 49 H 1.07993 * 120.09531 * 180.25185 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1552 1.2288 -0.3918 5 6 1.5515 2.3328 0.5035 6 7 0.3769 2.2579 1.0926 7 14 2.4134 3.9825 0.3450 8 1 2.6300 4.2918 -1.0912 9 1 1.5723 5.0414 0.9586 10 1 3.7233 3.9255 1.0421 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 8 1.2060 -1.9926 2.0822 14 6 1.3324 -2.4149 3.4416 15 6 -0.0566 -2.6889 4.0217 16 7 -0.6646 -3.8214 3.3190 17 6 -1.4787 -3.5899 2.1231 18 6 -0.4751 -5.0764 3.7725 19 8 0.1880 -5.2674 4.7743 20 6 -1.0699 -6.2148 3.0563 21 6 -0.7705 -7.5228 3.2694 22 6 -1.5569 -8.2954 2.3809 23 6 -1.6745 -9.6720 2.1488 24 6 -2.5417 -10.1284 1.1993 25 6 -3.3117 -9.2403 0.4587 26 6 -3.2140 -7.8830 0.6681 27 6 -2.3362 -7.3927 1.6312 28 7 -2.0228 -6.1247 2.0601 29 1 -2.4075 -5.3020 1.7193 30 1 -0.3633 0.0904 1.0237 31 1 -0.3634 0.8414 -0.5900 32 1 -0.3635 -0.9317 -0.4336 33 1 -0.0410 3.0593 1.4448 34 1 3.1499 -1.1387 -0.5134 35 1 1.6083 -2.0286 -0.5130 36 1 2.9642 -0.9123 1.9818 37 1 3.0731 -2.6058 1.4449 38 1 1.8207 -1.6317 4.0214 39 1 1.9300 -3.3255 3.4851 40 1 -0.6830 -1.8056 3.8975 41 1 0.0327 -2.9249 5.0821 42 1 -2.5325 -3.5625 2.4007 43 1 -1.1973 -2.6391 1.6706 44 1 -1.3122 -4.3959 1.4086 45 1 -0.0598 -7.9047 3.9874 46 1 -1.0808 -10.3701 2.7202 47 1 -2.6302 -11.1901 1.0220 48 1 -3.9935 -9.6182 -0.2887 49 1 -3.8198 -7.2010 0.0901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691606430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:26 Heat of formation + Delta-G solvation = 30.932563 kcal Electronic energy + Delta-G solvation = -30239.388678 eV Core-core repulsion = 26169.194713 eV Total energy + Delta-G solvation = -4070.193965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.91592 -39.70116 -37.56901 -37.00703 -35.85877 -35.03146 -32.43576 -31.63305 -30.68007 -29.43779 -29.10817 -28.02528 -26.74657 -25.76529 -24.47011 -22.99885 -22.45552 -22.16366 -21.04932 -20.33546 -19.88603 -17.75985 -17.61468 -16.81854 -16.54107 -16.06058 -15.95097 -15.64812 -15.21836 -14.84849 -14.64389 -14.50260 -14.42331 -13.99430 -13.77973 -13.58737 -13.34729 -13.20676 -13.14757 -13.01682 -12.41372 -12.32813 -12.11418 -11.91912 -11.83464 -11.48084 -11.37310 -11.13692 -10.98582 -10.83470 -10.78731 -10.54293 -10.22380 -10.12294 -10.10957 -9.95436 -9.83226 -8.96857 -8.83478 -8.52038 -8.47526 -7.99183 -6.68323 -5.69405 -3.17274 0.55948 1.38525 1.91875 2.63322 2.88136 3.19646 3.37786 3.43104 3.43640 3.67188 4.19502 4.28930 4.44739 4.51014 4.76617 4.82737 4.86014 5.05812 5.08817 5.16184 5.24177 5.31355 5.35604 5.42332 5.47899 5.56914 5.63822 5.65132 5.72491 5.78729 5.81243 5.88470 6.09684 6.16329 6.19432 6.24478 6.26128 6.35310 6.42653 6.45625 6.55311 6.76006 6.83971 6.87573 7.11796 7.19400 7.47046 7.78959 7.83206 7.90999 7.93786 8.43995 9.28280 9.90582 10.41616 11.34543 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.002271 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.628003 B =12326.947674 C =12980.298897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.597 5.597 3 C -0.256 4.256 4 H 0.065 0.935 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.368 6.368 14 C 0.047 3.953 15 C 0.121 3.879 16 N -0.598 5.598 17 C 0.057 3.943 18 C 0.580 3.420 19 O -0.527 6.527 20 C 0.025 3.975 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.062 4.062 24 C -0.151 4.151 25 C -0.091 4.091 26 C -0.131 4.131 27 C 0.106 3.894 28 N -0.582 5.582 29 H 0.425 0.575 30 H 0.032 0.968 31 H 0.036 0.964 32 H -0.010 1.010 33 H 0.251 0.749 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.023 0.977 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.154 0.846 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.126 0.874 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.674 -21.521 1.845 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.319 5.319 3 C -0.385 4.385 4 H 0.083 0.917 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.287 6.287 14 C -0.031 4.031 15 C -0.001 4.001 16 N -0.329 5.329 17 C -0.086 4.086 18 C 0.368 3.632 19 O -0.404 6.404 20 C -0.084 4.084 21 C -0.139 4.139 22 C -0.124 4.124 23 C -0.080 4.080 24 C -0.170 4.170 25 C -0.110 4.110 26 C -0.152 4.152 27 C -0.004 4.004 28 N -0.195 5.195 29 H 0.272 0.728 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.008 0.992 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.090 0.910 45 H 0.172 0.828 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.663 -21.203 2.325 22.665 hybrid contribution 0.542 1.434 -0.059 1.534 sum -7.122 -19.770 2.267 21.135 Atomic orbital electron populations 1.20701 0.82322 0.94462 0.99320 1.43838 1.02077 1.00197 1.85838 1.19155 0.99191 0.86147 1.34044 0.91714 1.25090 0.97440 0.98537 0.98392 1.70053 1.16228 1.27360 1.41457 0.86366 0.78780 0.83843 0.77679 1.21108 1.21660 1.21059 1.20886 0.96375 0.88760 0.91397 1.23450 0.85226 0.96788 0.98009 1.87901 1.30412 1.87324 1.23094 1.22766 0.96521 0.98214 0.85617 1.21653 0.93894 0.88073 0.96472 1.47654 1.50762 1.05985 1.28545 1.22299 0.94080 1.05240 0.87025 1.17308 0.80419 0.81626 0.83863 1.90830 1.40332 1.84378 1.24839 1.20132 0.97460 0.95345 0.95484 1.20879 1.01899 0.90050 1.01100 1.18234 1.00660 0.93573 0.99914 1.20411 0.97572 0.92938 0.97120 1.20628 0.98614 0.99675 0.98108 1.20870 0.98955 0.92077 0.99139 1.20094 1.00188 0.95947 0.98938 1.18463 0.99136 0.84518 0.98331 1.43284 1.35978 1.07547 1.32695 0.72772 0.94928 0.94477 0.99159 0.93870 0.92465 0.94024 0.93402 0.95931 0.92620 0.93959 0.88827 0.88523 0.92463 0.87422 0.90959 0.82791 0.85830 0.85968 0.85621 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.31 8.60 59.85 0.51 4.82 16 2 N -0.60 -14.89 2.89 -181.12 -0.52 -15.42 16 3 C -0.26 -6.96 9.67 -15.06 -0.15 -7.11 16 4 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 5 C 0.00 0.10 5.23 -17.43 -0.09 0.01 16 6 N -0.91 -26.04 10.47 55.49 0.58 -25.45 16 7 Si 0.90 21.72 29.56 -169.99 -5.02 16.70 16 8 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.15 3.15 6.11 -4.04 -0.02 3.13 16 12 C 0.04 0.86 6.28 37.16 0.23 1.09 16 13 O -0.37 -6.89 8.85 -35.23 -0.31 -7.20 16 14 C 0.05 0.75 6.28 37.16 0.23 0.98 16 15 C 0.12 1.68 5.79 -4.05 -0.02 1.65 16 16 N -0.60 -7.88 2.84 -182.99 -0.52 -8.40 16 17 C 0.06 0.62 8.62 59.85 0.52 1.14 16 18 C 0.58 8.30 7.65 -12.68 -0.10 8.20 16 19 O -0.53 -8.90 16.44 5.23 0.09 -8.81 16 20 C 0.03 0.32 6.57 -82.29 -0.54 -0.22 16 21 C -0.11 -1.37 10.55 -39.16 -0.41 -1.79 16 22 C -0.12 -1.35 6.16 -106.93 -0.66 -2.01 16 23 C -0.06 -0.57 10.06 -39.53 -0.40 -0.97 16 24 C -0.15 -1.21 9.97 -39.97 -0.40 -1.61 16 25 C -0.09 -0.71 10.01 -39.53 -0.40 -1.11 16 26 C -0.13 -1.16 10.08 -39.42 -0.40 -1.56 16 27 C 0.11 1.15 7.25 -83.97 -0.61 0.54 16 28 N -0.58 -6.18 5.08 -7.35 -0.04 -6.22 16 29 H 0.42 3.66 4.89 -40.82 -0.20 3.46 16 30 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 31 H 0.04 0.98 7.27 -51.93 -0.38 0.60 16 32 H -0.01 -0.22 7.84 -51.93 -0.41 -0.63 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 35 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 41 H 0.10 1.28 7.41 -51.93 -0.38 0.89 16 42 H 0.06 0.48 7.66 -51.93 -0.40 0.09 16 43 H 0.11 1.40 7.26 -51.93 -0.38 1.02 16 44 H 0.07 0.73 5.24 -51.93 -0.27 0.46 16 45 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -32.84 400.18 -9.81 -42.65 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.39 Total: 0.94 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -2.70 Total: 5.19 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.50 Total: -55.49 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.23 Total: -16.01 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.84 -9.81 -42.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691606430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.578 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds