Wall clock time and date at job start Sat Apr 11 2020 07:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00344 * 2 1 4 4 H 1.08000 * 119.99900 * 204.76392 * 3 2 1 5 5 C 1.38807 * 120.00047 * 24.76166 * 3 2 1 6 6 N 1.31622 * 119.99982 * 6.27529 * 5 3 2 7 7 Si 1.86803 * 120.00258 * 186.27516 * 5 3 2 8 8 H 1.48498 * 109.47242 * 59.99943 * 7 5 3 9 9 H 1.48502 * 109.46994 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46849 * 300.00004 * 7 5 3 11 11 C 1.46504 * 119.99836 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47298 * 270.00088 * 11 2 1 13 13 O 1.42891 * 109.47095 * 64.99799 * 12 11 2 14 14 C 1.42901 * 113.99871 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47006 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47356 * 65.00080 * 15 14 13 17 17 C 1.46507 * 120.00051 * 270.00018 * 16 15 14 18 18 C 1.34776 * 120.00341 * 89.99789 * 16 15 14 19 19 O 1.21649 * 119.99870 * 0.85624 * 18 16 15 20 20 C 1.47062 * 120.00336 * 180.85305 * 18 16 15 21 21 C 1.35860 * 125.43300 * 168.03356 * 20 18 16 22 22 C 1.41584 * 107.73020 * 179.97438 * 21 20 18 23 23 C 1.40103 * 133.37632 * 179.97438 * 22 21 20 24 24 C 1.36447 * 119.82542 * 180.02562 * 23 22 21 25 25 C 1.38936 * 120.61697 * 359.97403 * 24 23 22 26 26 C 1.37674 * 120.65214 * 0.03455 * 25 24 23 27 27 C 1.39233 * 119.80722 * 359.97438 * 26 25 24 28 28 N 1.37477 * 133.18208 * 179.97438 * 27 26 25 29 29 H 0.97002 * 125.60973 * 0.02562 * 28 27 26 30 30 H 1.09003 * 109.46749 * 275.04419 * 1 2 3 31 31 H 1.08999 * 109.47280 * 35.03732 * 1 2 3 32 32 H 1.08999 * 109.47803 * 155.04317 * 1 2 3 33 33 H 0.97003 * 119.99908 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46877 * 149.99856 * 11 2 1 35 35 H 1.09003 * 109.46880 * 30.00153 * 11 2 1 36 36 H 1.08997 * 109.46536 * 304.99747 * 12 11 2 37 37 H 1.08995 * 109.47196 * 185.00243 * 12 11 2 38 38 H 1.09001 * 109.46933 * 60.00195 * 14 13 12 39 39 H 1.09001 * 109.47162 * 299.99817 * 14 13 12 40 40 H 1.09002 * 109.47452 * 304.99574 * 15 14 13 41 41 H 1.09004 * 109.46891 * 184.99824 * 15 14 13 42 42 H 1.09002 * 109.46709 * 263.46351 * 17 16 15 43 43 H 1.08995 * 109.46642 * 23.46173 * 17 16 15 44 44 H 1.08993 * 109.47328 * 143.46706 * 17 16 15 45 45 H 1.08007 * 126.13522 * 359.94503 * 21 20 18 46 46 H 1.07995 * 120.08812 * 0.06381 * 23 22 21 47 47 H 1.08000 * 119.68513 * 179.97438 * 24 23 22 48 48 H 1.08000 * 119.67458 * 180.02562 * 25 24 23 49 49 H 1.07993 * 120.09531 * 180.25185 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1552 1.2288 -0.3918 5 6 1.5515 2.3328 0.5035 6 7 0.3769 2.2579 1.0926 7 14 2.4134 3.9825 0.3450 8 1 2.6300 4.2918 -1.0912 9 1 1.5723 5.0414 0.9586 10 1 3.7233 3.9255 1.0421 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 8 1.2060 -1.9926 2.0822 14 6 1.3324 -2.4149 3.4416 15 6 -0.0566 -2.6889 4.0217 16 7 -0.6646 -3.8214 3.3190 17 6 -1.4787 -3.5899 2.1231 18 6 -0.4751 -5.0764 3.7725 19 8 0.1880 -5.2674 4.7743 20 6 -1.0699 -6.2148 3.0563 21 6 -0.7705 -7.5228 3.2694 22 6 -1.5569 -8.2954 2.3809 23 6 -1.6745 -9.6720 2.1488 24 6 -2.5417 -10.1284 1.1993 25 6 -3.3117 -9.2403 0.4587 26 6 -3.2140 -7.8830 0.6681 27 6 -2.3362 -7.3927 1.6312 28 7 -2.0228 -6.1247 2.0601 29 1 -2.4075 -5.3020 1.7193 30 1 -0.3633 0.0904 1.0237 31 1 -0.3634 0.8414 -0.5900 32 1 -0.3635 -0.9317 -0.4336 33 1 -0.0410 3.0593 1.4448 34 1 3.1499 -1.1387 -0.5134 35 1 1.6083 -2.0286 -0.5130 36 1 2.9642 -0.9123 1.9818 37 1 3.0731 -2.6058 1.4449 38 1 1.8207 -1.6317 4.0214 39 1 1.9300 -3.3255 3.4851 40 1 -0.6830 -1.8056 3.8975 41 1 0.0327 -2.9249 5.0821 42 1 -2.5325 -3.5625 2.4007 43 1 -1.1973 -2.6391 1.6706 44 1 -1.3122 -4.3959 1.4086 45 1 -0.0598 -7.9047 3.9874 46 1 -1.0808 -10.3701 2.7202 47 1 -2.6302 -11.1901 1.0220 48 1 -3.9935 -9.6182 -0.2887 49 1 -3.8198 -7.2010 0.0901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691606430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:25 Heat of formation + Delta-G solvation = 12.405259 kcal Electronic energy + Delta-G solvation = -30240.192082 eV Core-core repulsion = 26169.194713 eV Total energy + Delta-G solvation = -4070.997369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.74563 -40.74014 -39.01173 -37.76765 -37.31245 -36.55176 -33.51399 -33.17518 -31.90195 -30.36338 -30.04508 -29.49471 -27.80710 -27.74832 -25.48755 -24.78116 -23.42519 -22.94067 -22.15302 -21.88121 -20.84162 -18.82886 -18.60363 -18.45767 -17.68312 -17.35828 -17.05770 -16.83091 -16.60855 -16.29208 -15.69159 -15.63591 -15.28108 -15.24929 -15.01781 -14.91269 -14.66304 -14.37190 -14.25201 -13.99894 -13.84369 -13.61133 -13.28185 -13.01761 -12.97256 -12.73264 -12.65086 -12.58532 -12.52397 -12.45638 -12.27240 -12.03175 -11.81092 -11.78929 -11.71354 -11.35269 -10.89916 -10.60925 -10.42760 -9.92390 -9.22821 -8.75727 -8.69896 -7.77787 -5.27371 -0.24735 0.69217 1.05200 1.46925 1.48130 1.54483 1.66624 1.99524 2.21392 2.52039 2.85887 2.97746 3.31650 3.35241 3.75360 3.76623 3.91185 4.03365 4.10529 4.12048 4.22452 4.32854 4.35563 4.39206 4.45471 4.49456 4.51458 4.56684 4.59702 4.62684 4.72280 4.77074 4.83053 4.93945 4.97497 4.98386 5.15156 5.15589 5.24302 5.42568 5.51852 5.57444 5.67703 5.68092 5.71403 5.88351 6.10908 6.17436 6.37056 6.40007 6.41080 6.85143 7.21344 7.93000 8.38081 9.24344 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.002271 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.628003 B =12326.947674 C =12980.298897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.613 5.613 3 C -0.263 4.263 4 H 0.069 0.931 5 C -0.051 4.051 6 N -0.933 5.933 7 Si 0.965 3.035 8 H -0.278 1.278 9 H -0.296 1.296 10 H -0.279 1.279 11 C 0.151 3.849 12 C 0.053 3.947 13 O -0.381 6.381 14 C 0.050 3.950 15 C 0.126 3.874 16 N -0.597 5.597 17 C 0.058 3.942 18 C 0.579 3.421 19 O -0.562 6.562 20 C 0.006 3.994 21 C -0.119 4.119 22 C -0.144 4.144 23 C -0.074 4.074 24 C -0.150 4.150 25 C -0.085 4.085 26 C -0.142 4.142 27 C 0.095 3.905 28 N -0.575 5.575 29 H 0.432 0.568 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.021 0.979 33 H 0.245 0.755 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.153 0.847 46 H 0.138 0.862 47 H 0.149 0.851 48 H 0.156 0.844 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.305 -23.308 0.442 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.336 5.336 3 C -0.394 4.394 4 H 0.086 0.914 5 C -0.246 4.246 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.204 1.204 9 H -0.222 1.222 10 H -0.205 1.205 11 C 0.024 3.976 12 C -0.027 4.027 13 O -0.300 6.300 14 C -0.028 4.028 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.084 4.084 18 C 0.369 3.631 19 O -0.441 6.441 20 C -0.104 4.104 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.092 4.092 24 C -0.169 4.169 25 C -0.105 4.105 26 C -0.162 4.162 27 C -0.016 4.016 28 N -0.189 5.189 29 H 0.281 0.719 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.171 0.829 46 H 0.156 0.844 47 H 0.167 0.833 48 H 0.173 0.827 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.290 -23.004 0.889 24.469 hybrid contribution 0.705 1.807 0.307 1.964 sum -7.585 -21.197 1.196 22.545 Atomic orbital electron populations 1.20395 0.82426 0.94673 0.97521 1.44057 1.02369 1.01182 1.85996 1.19486 0.99349 0.87274 1.33276 0.91356 1.25811 0.98257 1.01733 0.98781 1.70226 1.17460 1.27638 1.42633 0.85385 0.77715 0.79837 0.77716 1.20438 1.22197 1.20459 1.21051 0.96728 0.87324 0.92466 1.23218 0.85619 0.97101 0.96713 1.87882 1.30275 1.87432 1.24385 1.22830 0.97821 0.97835 0.84361 1.21563 0.92882 0.88466 0.96744 1.47703 1.50638 1.05496 1.28934 1.22383 0.95215 1.04472 0.86362 1.17524 0.79959 0.82128 0.83516 1.90797 1.42045 1.84917 1.26387 1.19885 0.98931 0.94772 0.96799 1.21042 1.01977 0.90361 1.01248 1.18469 1.01223 0.94750 1.00363 1.20697 0.98297 0.92378 0.97858 1.21021 0.97541 1.01233 0.97070 1.21322 0.98551 0.91631 0.98971 1.20436 1.00103 0.96977 0.98729 1.18796 0.99587 0.84330 0.98843 1.43156 1.35537 1.08016 1.32179 0.71948 0.97328 0.97354 0.96091 0.94530 0.91411 0.92223 0.95978 0.93163 0.93013 0.94065 0.88725 0.87974 0.89744 0.89274 0.90020 0.82893 0.84430 0.83309 0.82666 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.52 8.60 127.77 1.10 10.62 16 2 N -0.61 -30.36 2.89 -726.93 -2.10 -32.46 16 3 C -0.26 -14.31 9.67 84.03 0.81 -13.50 16 4 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 5 C -0.05 -2.82 5.23 84.86 0.44 -2.37 16 6 N -0.93 -54.55 10.47 21.65 0.23 -54.32 16 7 Si 0.96 44.87 29.56 68.60 2.03 46.90 16 8 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 9 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 C 0.15 5.98 6.11 86.38 0.53 6.51 16 12 C 0.05 1.97 6.28 71.98 0.45 2.43 16 13 O -0.38 -14.11 8.85 -148.98 -1.32 -15.43 16 14 C 0.05 1.58 6.28 71.98 0.45 2.04 16 15 C 0.13 3.51 5.79 86.38 0.50 4.01 16 16 N -0.60 -15.66 2.84 -851.08 -2.41 -18.07 16 17 C 0.06 1.22 8.62 127.77 1.10 2.32 16 18 C 0.58 16.76 7.65 86.56 0.66 17.42 16 19 O -0.56 -19.48 16.44 -4.19 -0.07 -19.55 16 20 C 0.01 0.14 6.57 39.91 0.26 0.41 16 21 C -0.12 -2.94 10.55 22.54 0.24 -2.70 16 22 C -0.14 -3.15 6.16 -21.36 -0.13 -3.28 16 23 C -0.07 -1.24 10.06 22.30 0.22 -1.02 16 24 C -0.15 -1.95 9.97 22.02 0.22 -1.73 16 25 C -0.09 -1.05 10.01 22.30 0.22 -0.83 16 26 C -0.14 -2.16 10.08 22.38 0.23 -1.94 16 27 C 0.09 1.93 7.25 39.14 0.28 2.21 16 28 N -0.58 -11.68 5.08 -177.18 -0.90 -12.59 16 29 H 0.43 6.87 4.89 -92.71 -0.45 6.42 16 30 H 0.01 0.45 7.34 -2.39 -0.02 0.43 16 31 H 0.01 0.42 7.27 -2.39 -0.02 0.40 16 32 H 0.02 0.87 7.84 -2.39 -0.02 0.85 16 33 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.07 2.53 8.04 -2.39 -0.02 2.51 16 35 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 2.62 8.07 -2.39 -0.02 2.60 16 41 H 0.10 2.74 7.41 -2.39 -0.02 2.72 16 42 H 0.08 1.31 7.66 -2.39 -0.02 1.29 16 43 H 0.09 2.27 7.26 -2.39 -0.02 2.25 16 44 H 0.08 1.56 5.24 -2.39 -0.01 1.55 16 45 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 46 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 47 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 48 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 49 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -71.02 400.18 3.55 -67.47 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.50 Total: 17.46 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 7.59 Total: 20.59 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -5.19 Total: -117.43 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.39 Total: -34.98 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -71.02 3.55 -67.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691606430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.876 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds