Wall clock time and date at job start Sat Apr 11 2020 07:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34786 * 119.99845 * 2 1 4 4 O 1.21275 * 119.99600 * 4.61884 * 3 2 1 5 5 C 1.50699 * 119.99822 * 184.61719 * 3 2 1 6 6 C 1.50290 * 109.46512 * 293.43997 * 5 3 2 7 7 C 1.32274 * 121.58751 * 303.35954 * 6 5 3 8 8 C 1.45201 * 123.04196 * 0.94916 * 7 6 5 9 9 C 1.32944 * 125.19904 * 319.60616 * 8 7 6 10 10 C 1.45199 * 125.19987 * 359.97438 * 9 8 7 11 11 C 1.32290 * 123.02171 * 40.43319 * 10 9 8 12 12 C 1.46498 * 120.00183 * 180.02562 * 2 1 3 13 13 H 1.09005 * 110.28976 * 179.29932 * 12 2 1 14 14 C 1.54254 * 110.32506 * 57.16872 * 12 2 1 15 15 C 1.54384 * 105.06007 * 241.00340 * 14 12 2 16 16 N 1.48556 * 104.59320 * 23.85153 * 15 14 12 17 17 C 1.46906 * 110.99906 * 200.95787 * 16 15 14 18 18 C 1.50695 * 109.47111 * 290.13166 * 17 16 15 19 19 O 1.21290 * 120.00431 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00095 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00354 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00023 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00060 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00221 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00015 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47193 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47336 * 120.00085 * 25 23 21 28 28 H 1.48498 * 109.47045 * 240.00091 * 25 23 21 29 29 C 1.48562 * 104.22352 * 320.51845 * 16 15 14 30 30 H 1.09005 * 109.46789 * 294.89845 * 1 2 3 31 31 H 1.08997 * 109.47138 * 54.89948 * 1 2 3 32 32 H 1.08994 * 109.46821 * 174.90139 * 1 2 3 33 33 H 1.08999 * 109.46573 * 53.42437 * 5 3 2 34 34 H 1.08004 * 119.20082 * 123.32882 * 6 5 3 35 35 H 1.07995 * 118.46605 * 180.99347 * 7 6 5 36 36 H 1.07996 * 117.39969 * 139.58368 * 8 7 6 37 37 H 1.07999 * 117.40112 * 179.97438 * 9 8 7 38 38 H 1.08005 * 118.49084 * 220.45727 * 10 9 8 39 39 H 1.08001 * 119.20272 * 179.04887 * 11 10 9 40 40 H 1.09000 * 110.32426 * 359.90313 * 14 12 2 41 41 H 1.09001 * 110.32534 * 122.00589 * 14 12 2 42 42 H 1.08998 * 110.41060 * 142.63141 * 15 14 12 43 43 H 1.09000 * 110.40816 * 264.95746 * 15 14 12 44 44 H 1.09006 * 109.46858 * 50.13001 * 17 16 15 45 45 H 1.09002 * 109.47106 * 170.12781 * 17 16 15 46 46 H 0.97002 * 119.99805 * 359.97438 * 20 18 17 47 47 H 0.97000 * 120.00361 * 179.97438 * 24 23 21 48 48 H 1.09003 * 110.40724 * 280.70521 * 29 16 15 49 49 H 1.08997 * 110.40976 * 158.26728 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5354 2.2158 0.0846 5 6 3.6422 1.1694 -0.1051 6 6 4.2317 0.5546 1.1332 7 6 3.9611 1.0283 2.3382 8 6 3.0698 2.1519 2.5654 9 6 3.0161 3.2505 1.8187 10 6 3.8399 3.5105 0.6517 11 6 4.1324 2.5832 -0.2453 12 6 2.1975 -1.2687 -0.0006 13 1 3.2719 -1.0848 -0.0130 14 6 1.7863 -2.1243 -1.2164 15 6 1.1872 -3.4139 -0.6152 16 7 0.7413 -3.0202 0.7461 17 6 0.6101 -4.1956 1.6176 18 6 -0.5664 -5.0240 1.1700 19 8 -1.2307 -4.6699 0.2189 20 7 -0.8812 -6.1578 1.8271 21 6 -1.9519 -6.9112 1.4203 22 1 -2.5434 -6.5959 0.5735 23 6 -2.2761 -8.0804 2.0975 24 7 -1.5561 -8.4643 3.1276 25 14 -3.7345 -9.1073 1.5427 26 1 -4.3753 -8.4631 0.3680 27 1 -3.2691 -10.4672 1.1694 28 1 -4.7190 -9.2076 2.6499 29 6 1.8124 -2.1132 1.2330 30 1 -0.3633 0.4327 0.9322 31 1 -0.3633 0.5909 -0.8408 32 1 -0.3633 -1.0236 -0.0913 33 1 3.9462 0.5913 -0.9777 34 1 4.8917 -0.2948 1.0368 35 1 4.4251 0.5579 3.1924 36 1 2.3969 2.0900 3.4078 37 1 2.3028 4.0101 2.1027 38 1 4.2322 4.5067 0.5095 39 1 4.7386 2.8484 -1.0990 40 1 1.0381 -1.6011 -1.8119 41 1 2.6585 -2.3589 -1.8267 42 1 0.3389 -3.7522 -1.2101 43 1 1.9458 -4.1945 -0.5577 44 1 1.5192 -4.7943 1.5593 45 1 0.4549 -3.8697 2.6461 46 1 -0.3502 -6.4408 2.5879 47 1 -1.7826 -9.2803 3.6006 48 1 2.6693 -2.6897 1.5816 49 1 1.4348 -1.4723 2.0297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698562418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:48 Heat of formation + Delta-G solvation = -10.528724 kcal Electronic energy + Delta-G solvation = -30868.614733 eV Core-core repulsion = 26796.622872 eV Total energy + Delta-G solvation = -4071.991861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80969 -40.50261 -39.32555 -38.04275 -36.21762 -35.70724 -33.34685 -33.26373 -33.18758 -32.22593 -29.62703 -28.81890 -28.00436 -26.44515 -25.88682 -24.48093 -22.65331 -22.33348 -20.99165 -20.72844 -19.85530 -19.36283 -18.46605 -18.23479 -17.73102 -17.42993 -17.01458 -16.65274 -16.32552 -16.12321 -16.00535 -15.66454 -15.53652 -15.11249 -14.97672 -14.55944 -14.40764 -14.01511 -13.81522 -13.53033 -13.44499 -13.21355 -13.13586 -13.02379 -12.93008 -12.91698 -12.88228 -12.66134 -12.51934 -12.38763 -12.12594 -12.08897 -11.78741 -11.67713 -11.45684 -11.09063 -10.89523 -10.30671 -10.11411 -9.98436 -9.65850 -9.29286 -9.02513 -8.45456 -5.93346 0.38624 1.12036 1.36495 1.41736 1.55416 1.66883 2.09018 2.13521 2.29167 2.34772 2.86492 3.21860 3.41990 3.55579 3.68881 3.78092 3.87033 4.01088 4.11627 4.18309 4.24746 4.29041 4.30380 4.36914 4.42796 4.51050 4.54749 4.56584 4.62721 4.64479 4.72280 4.80299 4.87526 4.95972 5.03358 5.03961 5.08944 5.13355 5.24300 5.42513 5.53868 5.58427 5.70388 5.87921 5.88252 5.90398 5.96387 5.97798 6.10806 6.54002 6.63026 7.15555 7.26300 7.59718 8.15887 8.72273 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026098 B = 0.002194 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.630054 B =12756.288595 C =12978.449707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.596 5.596 3 C 0.517 3.483 4 O -0.566 6.566 5 C -0.050 4.050 6 C -0.141 4.141 7 C -0.118 4.118 8 C -0.161 4.161 9 C -0.082 4.082 10 C -0.119 4.119 11 C -0.133 4.133 12 C 0.139 3.861 13 H 0.137 0.863 14 C -0.128 4.128 15 C 0.037 3.963 16 N -0.507 5.507 17 C 0.048 3.952 18 C 0.443 3.557 19 O -0.615 6.615 20 N -0.577 5.577 21 C -0.328 4.328 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.990 3.010 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.024 3.976 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.158 0.842 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.143 0.857 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.080 0.920 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.909 17.399 -3.506 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.328 5.328 3 C 0.306 3.694 4 O -0.445 6.445 5 C -0.071 4.071 6 C -0.159 4.159 7 C -0.136 4.136 8 C -0.179 4.179 9 C -0.100 4.100 10 C -0.137 4.137 11 C -0.151 4.151 12 C 0.035 3.965 13 H 0.154 0.846 14 C -0.166 4.166 15 C -0.091 4.091 16 N -0.231 5.231 17 C -0.083 4.083 18 C 0.231 3.769 19 O -0.500 6.500 20 N -0.215 5.215 21 C -0.457 4.457 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.198 1.198 29 C -0.104 4.104 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.571 18.276 -3.965 25.661 hybrid contribution -0.505 -1.153 0.585 1.388 sum 17.066 17.124 -3.380 24.411 Atomic orbital electron populations 1.21427 0.79916 1.03060 1.00184 1.47910 1.06434 1.05912 1.72538 1.21066 0.90653 0.82663 0.74995 1.90664 1.71102 1.32255 1.50490 1.19398 0.89899 0.97172 1.00622 1.23132 1.01706 1.00250 0.90818 1.21272 0.97624 0.96116 0.98587 1.21127 1.00247 0.94830 1.01661 1.21072 0.96666 0.97697 0.94613 1.21215 0.97634 1.00055 0.94816 1.23031 1.00980 0.91561 0.99538 1.22194 0.97752 0.82389 0.94183 0.84570 1.22757 1.02005 0.94442 0.97427 1.23070 0.98479 0.97131 0.90445 1.65064 1.42198 1.13722 1.02161 1.21898 0.95812 0.91975 0.98630 1.20786 0.88420 0.82594 0.85128 1.90484 1.55838 1.72260 1.31457 1.41945 1.28336 1.21154 1.30081 1.19645 1.07461 1.04223 1.14414 0.90483 1.25994 1.01374 0.98174 0.95830 1.69672 1.40797 1.25241 1.20564 0.84909 0.77645 0.77869 0.78154 1.19913 1.19562 1.19798 1.23551 0.93875 0.95288 0.97669 0.94212 0.93375 0.89462 0.84844 0.82441 0.84684 0.88045 0.88336 0.85354 0.83904 0.91489 0.87315 0.92393 0.93120 0.90632 0.87793 0.77083 0.91398 0.90152 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.63 9.01 127.77 1.15 3.78 16 2 N -0.60 -13.15 2.75 -817.60 -2.25 -15.40 16 3 C 0.52 11.80 5.55 87.66 0.49 12.28 16 4 O -0.57 -17.24 13.20 -3.02 -0.04 -17.28 16 5 C -0.05 -0.74 2.08 -13.29 -0.03 -0.77 16 6 C -0.14 -1.69 7.00 24.50 0.17 -1.51 16 7 C -0.12 -1.80 9.58 23.00 0.22 -1.58 16 8 C -0.16 -3.28 8.48 22.89 0.19 -3.09 16 9 C -0.08 -1.79 7.14 22.89 0.16 -1.62 16 10 C -0.12 -2.20 9.09 22.99 0.21 -1.99 16 11 C -0.13 -2.07 8.84 24.49 0.22 -1.86 16 12 C 0.14 2.35 2.86 45.88 0.13 2.48 16 13 H 0.14 1.39 4.57 -2.38 -0.01 1.38 16 14 C -0.13 -2.41 6.16 31.49 0.19 -2.22 16 15 C 0.04 1.00 5.79 86.45 0.50 1.50 16 16 N -0.51 -14.71 3.87 -886.03 -3.42 -18.14 16 17 C 0.05 1.56 5.30 85.55 0.45 2.02 16 18 C 0.44 20.49 7.58 87.66 0.66 21.15 16 19 O -0.61 -33.14 14.42 -3.06 -0.04 -33.19 16 20 N -0.58 -29.14 5.29 -307.00 -1.62 -30.77 16 21 C -0.33 -18.47 9.68 84.04 0.81 -17.65 16 22 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 25 Si 0.99 42.92 29.55 68.60 2.03 44.94 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 C 0.02 0.49 5.71 86.45 0.49 0.98 16 30 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.09 2.61 6.10 -2.39 -0.01 2.60 16 33 H 0.13 1.20 7.65 -2.39 -0.02 1.18 16 34 H 0.16 0.82 7.80 -2.91 -0.02 0.80 16 35 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.10 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.10 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.07 1.48 7.29 -2.39 -0.02 1.47 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 2.09 6.91 -2.39 -0.02 2.08 16 43 H 0.05 1.26 7.83 -2.39 -0.02 1.24 16 44 H 0.08 2.08 7.88 -2.38 -0.02 2.06 16 45 H 0.10 3.05 8.13 -2.39 -0.02 3.03 16 46 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 47 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 48 H 0.08 1.22 8.00 -2.39 -0.02 1.20 16 49 H 0.08 1.73 8.06 -2.39 -0.02 1.71 16 Total: -1.00 -73.93 387.09 1.66 -72.26 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.23 Total: 35.09 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.50 Total: 11.60 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -7.01 Total: -113.43 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -0.08 Total: -50.47 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.93 1.66 -72.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698562418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.734 kcal (2) G-P(sol) polarization free energy of solvation -73.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds