Wall clock time and date at job start Sat Apr 11 2020 07:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00578 * 2 1 4 4 H 1.07998 * 120.00521 * 202.67617 * 3 2 1 5 5 C 1.38813 * 119.99824 * 22.67432 * 3 2 1 6 6 N 1.31621 * 119.99943 * 11.50595 * 5 3 2 7 7 Si 1.86801 * 119.99976 * 191.50382 * 5 3 2 8 8 H 1.48493 * 109.47361 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47243 * 120.00538 * 7 5 3 10 10 H 1.48507 * 109.46972 * 239.99791 * 7 5 3 11 11 C 1.46504 * 119.99662 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47186 * 270.00064 * 11 2 1 13 13 H 1.09002 * 109.47333 * 305.00069 * 12 11 2 14 14 O 1.42901 * 109.46973 * 65.00396 * 12 11 2 15 15 C 1.52997 * 109.47185 * 184.99995 * 12 11 2 16 16 N 1.46507 * 109.47249 * 180.02562 * 15 12 11 17 17 C 1.46495 * 119.99824 * 269.99886 * 16 15 12 18 18 C 1.34775 * 119.99979 * 89.99861 * 16 15 12 19 19 O 1.21278 * 120.00193 * 0.02562 * 18 16 15 20 20 C 1.50702 * 119.99555 * 179.97438 * 18 16 15 21 21 N 1.46503 * 109.46713 * 180.02562 * 20 18 16 22 22 C 1.36835 * 125.06028 * 264.69851 * 21 20 18 23 23 C 1.34237 * 109.92644 * 180.26654 * 22 21 20 24 24 C 1.46481 * 107.00070 * 359.97438 * 23 22 21 25 25 C 1.39630 * 134.03311 * 180.02562 * 24 23 22 26 26 C 1.36631 * 119.76695 * 179.97438 * 25 24 23 27 27 C 1.38826 * 120.52334 * 0.02562 * 26 25 24 28 28 C 1.37751 * 120.66947 * 359.97391 * 27 26 25 29 29 C 1.37691 * 125.06332 * 85.00286 * 21 20 18 30 30 H 1.08993 * 109.47317 * 273.93623 * 1 2 3 31 31 H 1.09004 * 109.46486 * 33.93027 * 1 2 3 32 32 H 1.09001 * 109.46969 * 153.92609 * 1 2 3 33 33 H 0.97002 * 119.99815 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.47196 * 150.00025 * 11 2 1 35 35 H 1.09001 * 109.47543 * 30.00452 * 11 2 1 36 36 H 0.96698 * 114.00707 * 59.99670 * 14 12 11 37 37 H 1.08996 * 109.47309 * 60.00351 * 15 12 11 38 38 H 1.08997 * 109.47405 * 299.99950 * 15 12 11 39 39 H 1.08998 * 109.47766 * 269.99934 * 17 16 15 40 40 H 1.09000 * 109.47484 * 29.99916 * 17 16 15 41 41 H 1.08999 * 109.47273 * 150.00045 * 17 16 15 42 42 H 1.08992 * 109.46973 * 60.00437 * 20 18 16 43 43 H 1.08989 * 109.47369 * 299.99979 * 20 18 16 44 44 H 1.07996 * 125.03419 * 0.22518 * 22 21 20 45 45 H 1.08002 * 126.49701 * 179.97438 * 23 22 21 46 46 H 1.07999 * 120.11804 * 359.96806 * 25 24 23 47 47 H 1.08004 * 119.73417 * 180.02562 * 26 25 24 48 48 H 1.08008 * 119.66372 * 179.97438 * 27 26 25 49 49 H 1.08004 * 120.10657 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1671 1.2219 -0.3606 5 6 1.5363 2.3415 0.4634 6 7 0.3913 2.2656 1.1082 7 14 2.3356 4.0045 0.1720 8 1 3.6081 3.8188 -0.5705 9 1 1.4192 4.8619 -0.6219 10 1 2.6151 4.6549 1.4775 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 1 2.9642 -0.9124 1.9819 14 8 1.2059 -1.9927 2.0821 15 6 3.3236 -2.9676 1.4456 16 7 3.5673 -3.3903 2.8270 17 6 4.7315 -2.8794 3.5548 18 6 2.7203 -4.2491 3.4283 19 8 1.7567 -4.6723 2.8257 20 6 2.9713 -4.6843 4.8491 21 7 1.9179 -5.6117 5.2690 22 6 0.7891 -5.2595 5.9577 23 6 0.0365 -6.3467 6.1892 24 6 0.7404 -7.4882 5.6002 25 6 0.4706 -8.8555 5.5140 26 6 1.3536 -9.6825 4.8791 27 6 2.5179 -9.1744 4.3191 28 6 2.8038 -7.8289 4.3926 29 6 1.9190 -6.9686 5.0347 30 1 -0.3633 0.0705 1.0252 31 1 -0.3632 0.8527 -0.5737 32 1 -0.3633 -0.9231 -0.4517 33 1 -0.0376 3.0733 1.4317 34 1 3.1499 -1.1388 -0.5133 35 1 1.6084 -2.0287 -0.5130 36 1 0.6953 -2.6943 1.6553 37 1 4.2744 -2.7519 0.9583 38 1 2.8119 -3.7651 0.9069 39 1 5.5806 -3.5439 3.3944 40 1 4.9777 -1.8815 3.1920 41 1 4.5028 -2.8328 4.6195 42 1 2.9691 -3.8116 5.5021 43 1 3.9389 -5.1820 4.9111 44 1 0.5410 -4.2557 6.2694 45 1 -0.9088 -6.3743 6.7108 46 1 -0.4329 -9.2580 5.9477 47 1 1.1441 -10.7399 4.8123 48 1 3.2064 -9.8408 3.8208 49 1 3.7120 -7.4432 3.9535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700969793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:24 Heat of formation + Delta-G solvation = 19.001897 kcal Electronic energy + Delta-G solvation = -30524.218072 eV Core-core repulsion = 26453.506754 eV Total energy + Delta-G solvation = -4070.711317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.48689 -39.78623 -37.37770 -36.87625 -35.38234 -34.52889 -33.04209 -31.36419 -30.71621 -29.68076 -28.92494 -27.27691 -27.05727 -25.78439 -24.98236 -22.78870 -22.08170 -21.58441 -20.55526 -20.45112 -19.33756 -17.53480 -17.24535 -16.80951 -16.59734 -16.12999 -15.80837 -15.49861 -15.16736 -14.76578 -14.52952 -14.33856 -14.16711 -13.90990 -13.70474 -13.40113 -13.26972 -13.16028 -13.05408 -12.84127 -12.67610 -12.48049 -12.24135 -11.74881 -11.69289 -11.63181 -11.53444 -11.10630 -10.92703 -10.87840 -10.70901 -10.42045 -10.27487 -10.03016 -9.98034 -9.91318 -9.68763 -9.55457 -8.61255 -8.41015 -8.20550 -7.71433 -6.67819 -5.69823 -3.16240 1.08643 1.57408 2.41694 2.55371 2.74245 3.08768 3.35835 3.42560 3.44666 3.88283 4.30637 4.45562 4.49100 4.57490 4.73253 4.76783 4.92831 4.94414 5.03660 5.05060 5.12340 5.28316 5.38019 5.40087 5.46377 5.49183 5.54077 5.61699 5.72751 5.74859 5.86640 5.89678 5.99837 6.02659 6.09729 6.39773 6.45410 6.54225 6.55610 6.71495 6.74424 6.80187 6.86296 7.13354 7.17190 7.33428 7.45653 7.78035 7.91861 8.12525 8.40707 8.45307 9.25279 9.88887 10.38878 11.34185 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002337 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.406484 B =11980.829577 C =12251.142601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.592 5.592 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.900 5.900 7 Si 0.903 3.097 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.125 3.875 12 C 0.072 3.928 13 H 0.094 0.906 14 O -0.543 6.543 15 C 0.081 3.919 16 N -0.605 5.605 17 C 0.074 3.926 18 C 0.498 3.502 19 O -0.515 6.515 20 C 0.094 3.906 21 N -0.467 5.467 22 C 0.066 3.934 23 C -0.206 4.206 24 C -0.107 4.107 25 C -0.072 4.072 26 C -0.151 4.151 27 C -0.103 4.103 28 C -0.125 4.125 29 C 0.109 3.891 30 H 0.034 0.966 31 H 0.040 0.960 32 H -0.008 1.008 33 H 0.251 0.749 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.362 0.638 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.168 0.832 45 H 0.147 0.853 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.919 -20.063 10.017 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.314 5.314 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.545 5.545 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.218 1.218 11 C -0.004 4.004 12 C 0.008 3.992 13 H 0.112 0.888 14 O -0.346 6.346 15 C -0.042 4.042 16 N -0.339 5.339 17 C -0.069 4.069 18 C 0.284 3.716 19 O -0.390 6.390 20 C -0.032 4.032 21 N -0.150 5.150 22 C -0.058 4.058 23 C -0.231 4.231 24 C -0.111 4.111 25 C -0.091 4.091 26 C -0.170 4.170 27 C -0.123 4.123 28 C -0.146 4.146 29 C 0.004 3.996 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.011 0.989 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.208 0.792 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.185 0.815 45 H 0.164 0.836 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.703 -19.404 10.048 23.170 hybrid contribution 0.435 0.878 -0.451 1.079 sum 8.138 -18.526 9.597 22.395 Atomic orbital electron populations 1.20765 0.82211 0.95022 0.99535 1.43850 1.02048 1.00134 1.85377 1.19214 0.98237 0.85494 1.35812 0.91507 1.25070 0.97772 0.98495 0.98314 1.70112 1.18002 1.26833 1.39561 0.86218 0.78629 0.84493 0.77364 1.20386 1.21612 1.21788 1.21445 0.96436 0.89394 0.93092 1.23229 0.84366 0.93625 0.97939 0.88780 1.86605 1.32244 1.59341 1.56410 1.22488 1.01259 0.99167 0.81330 1.47737 1.26119 1.45338 1.14744 1.21852 0.87685 1.00561 0.96840 1.20678 0.83140 0.79284 0.88520 1.90726 1.27907 1.55180 1.65180 1.21626 0.91614 0.94905 0.95093 1.43402 1.18941 1.04781 1.47894 1.21831 0.86730 0.99813 0.97432 1.21631 1.01625 0.90671 1.09184 1.19206 0.95263 0.93765 1.02888 1.20246 0.99027 0.91186 0.98615 1.20576 0.95423 0.99508 1.01504 1.20741 0.97522 0.93993 1.00021 1.19964 0.99256 0.92832 1.02512 1.18180 0.97409 0.82991 1.01057 0.94737 0.94119 0.98920 0.93857 0.93267 0.94193 0.79202 0.90033 0.90101 0.92500 0.90181 0.91373 0.86327 0.87228 0.81487 0.83573 0.86246 0.86299 0.86065 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.36 8.61 59.85 0.52 4.87 16 2 N -0.59 -15.03 2.89 -181.12 -0.52 -15.55 16 3 C -0.26 -7.06 9.67 -15.06 -0.15 -7.21 16 4 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 5 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 6 N -0.90 -26.77 10.62 55.49 0.59 -26.18 16 7 Si 0.90 21.81 29.57 -169.99 -5.03 16.78 16 8 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 C 0.13 2.51 5.37 -4.04 -0.02 2.48 16 12 C 0.07 1.31 3.48 -26.74 -0.09 1.22 16 13 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 14 O -0.54 -11.21 11.70 -43.95 -0.51 -11.72 16 15 C 0.08 1.12 5.15 -4.04 -0.02 1.10 16 16 N -0.61 -7.47 2.83 -181.58 -0.51 -7.98 16 17 C 0.07 0.62 10.24 59.84 0.61 1.23 16 18 C 0.50 6.81 7.25 -10.99 -0.08 6.73 16 19 O -0.52 -9.16 14.79 -3.16 -0.05 -9.20 16 20 C 0.09 0.95 5.04 -5.19 -0.03 0.92 16 21 N -0.47 -5.81 2.27 -115.72 -0.26 -6.08 16 22 C 0.07 0.80 11.27 -16.73 -0.19 0.61 16 23 C -0.21 -2.50 11.08 -37.67 -0.42 -2.92 16 24 C -0.11 -1.41 6.37 -105.14 -0.67 -2.08 16 25 C -0.07 -0.82 10.05 -39.64 -0.40 -1.22 16 26 C -0.15 -1.56 9.97 -39.94 -0.40 -1.96 16 27 C -0.10 -1.09 10.01 -39.54 -0.40 -1.48 16 28 C -0.13 -1.49 10.00 -39.43 -0.39 -1.88 16 29 C 0.11 1.46 6.80 -83.99 -0.57 0.89 16 30 H 0.03 0.98 7.43 -51.93 -0.39 0.59 16 31 H 0.04 1.12 7.20 -51.93 -0.37 0.74 16 32 H -0.01 -0.18 7.85 -51.93 -0.41 -0.59 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 35 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 36 H 0.36 7.04 8.45 45.56 0.38 7.42 16 37 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.08 1.19 7.42 -51.93 -0.39 0.81 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 41 H 0.07 0.45 6.44 -51.93 -0.33 0.11 16 42 H 0.12 0.94 7.37 -51.93 -0.38 0.56 16 43 H 0.11 0.82 8.11 -51.94 -0.42 0.40 16 44 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 48 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 49 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 404.56 15.07 6.10 6.10 Total: -1.00 -36.01 404.56 -9.88 -45.89 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.90 Total: 6.67 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.78 Total: 1.29 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.71 Total: -55.79 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.56 Total: -20.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.01 -9.88 -45.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700969793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.891 kcal (2) G-P(sol) polarization free energy of solvation -36.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds