Wall clock time and date at job start Sat Apr 11 2020 07:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 119.99633 * 2 1 4 4 H 1.08006 * 120.00244 * 202.84979 * 3 2 1 5 5 C 1.38809 * 120.00455 * 22.85489 * 3 2 1 6 6 N 1.31618 * 119.99567 * 14.89264 * 5 3 2 7 7 Si 1.86800 * 120.00378 * 194.89734 * 5 3 2 8 8 H 1.48495 * 109.46964 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47315 * 120.00030 * 7 5 3 10 10 H 1.48503 * 109.46886 * 239.99905 * 7 5 3 11 11 C 1.46497 * 120.00208 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46782 * 269.99781 * 11 2 1 13 13 O 1.42895 * 109.47412 * 64.99978 * 12 11 2 14 14 C 1.42896 * 113.99968 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47118 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47223 * 64.99903 * 15 14 13 17 17 C 1.46496 * 120.00016 * 90.00063 * 16 15 14 18 18 C 1.34780 * 120.00001 * 270.00232 * 16 15 14 19 19 O 1.21674 * 119.99779 * 5.65390 * 18 16 15 20 20 C 1.46904 * 119.99994 * 185.66027 * 18 16 15 21 21 C 1.36377 * 126.77290 * 7.16803 * 20 18 16 22 22 N 1.35464 * 109.77186 * 179.82853 * 21 20 18 23 23 H 0.97004 * 124.78703 * 180.22040 * 22 21 20 24 24 C 1.37963 * 110.42732 * 0.44872 * 22 21 20 25 25 C 1.39125 * 133.19062 * 179.72441 * 24 22 21 26 26 C 1.37764 * 119.93364 * 180.02562 * 25 24 22 27 27 C 1.38755 * 120.62743 * 359.95674 * 26 25 24 28 28 C 1.37755 * 120.30626 * 0.04757 * 27 26 25 29 29 C 1.39271 * 119.67076 * 359.97108 * 28 27 26 30 30 H 1.09006 * 109.46866 * 275.14372 * 1 2 3 31 31 H 1.09001 * 109.47720 * 35.14467 * 1 2 3 32 32 H 1.09000 * 109.47470 * 155.14943 * 1 2 3 33 33 H 0.97006 * 120.00422 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47461 * 149.99337 * 11 2 1 35 35 H 1.09006 * 109.46981 * 29.99580 * 11 2 1 36 36 H 1.08999 * 109.46792 * 304.99596 * 12 11 2 37 37 H 1.08999 * 109.46966 * 185.00151 * 12 11 2 38 38 H 1.08996 * 109.47554 * 59.99825 * 14 13 12 39 39 H 1.09002 * 109.47507 * 299.99687 * 14 13 12 40 40 H 1.09000 * 109.47201 * 304.99762 * 15 14 13 41 41 H 1.09005 * 109.47381 * 184.99871 * 15 14 13 42 42 H 1.09005 * 109.47206 * 95.62908 * 17 16 15 43 43 H 1.09003 * 109.47335 * 215.62157 * 17 16 15 44 44 H 1.08996 * 109.47276 * 335.62686 * 17 16 15 45 45 H 1.08003 * 125.11164 * 0.02562 * 21 20 18 46 46 H 1.08004 * 120.03083 * 0.03041 * 25 24 22 47 47 H 1.07990 * 119.68471 * 179.97438 * 26 25 24 48 48 H 1.08004 * 119.84310 * 180.02562 * 27 26 25 49 49 H 1.07998 * 120.16013 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1661 1.2227 -0.3632 5 6 1.5373 2.3409 0.4669 6 7 0.4290 2.2591 1.1721 7 14 2.2861 4.0112 0.0942 8 1 3.5220 3.8314 -0.7091 9 1 1.3125 4.8305 -0.6712 10 1 2.6194 4.6994 1.3672 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7109 1.4418 13 8 1.2062 -1.9943 2.0806 14 6 1.3326 -2.4177 3.4395 15 6 -0.0564 -2.6910 4.0199 16 7 -0.6655 -3.8226 3.3165 17 6 -0.4604 -5.1872 3.8084 18 6 -1.4146 -3.6083 2.2167 19 8 -1.5010 -2.4886 1.7483 20 6 -2.1268 -4.7264 1.5837 21 6 -2.2389 -5.9985 2.0621 22 7 -2.9729 -6.7475 1.2047 23 1 -3.1898 -7.6841 1.3342 24 6 -3.3643 -5.9918 0.1189 25 6 -4.1097 -6.2770 -1.0207 26 6 -4.3416 -5.2914 -1.9549 27 6 -3.8390 -4.0111 -1.7714 28 6 -3.0985 -3.7092 -0.6497 29 6 -2.8561 -4.6961 0.3026 30 1 -0.3633 0.0921 1.0236 31 1 -0.3634 0.8403 -0.5916 32 1 -0.3634 -0.9325 -0.4319 33 1 0.0008 3.0661 1.4981 34 1 3.1499 -1.1382 -0.5144 35 1 1.6084 -2.0282 -0.5147 36 1 2.9643 -0.9138 1.9810 37 1 3.0733 -2.6068 1.4427 38 1 1.8209 -1.6350 4.0201 39 1 1.9303 -3.3282 3.4824 40 1 -0.6822 -1.8071 3.8965 41 1 0.0329 -2.9278 5.0801 42 1 -1.3005 -5.4758 4.4401 43 1 -0.3897 -5.8715 2.9629 44 1 0.4616 -5.2296 4.3883 45 1 -1.8098 -6.3543 2.9872 46 1 -4.5062 -7.2700 -1.1728 47 1 -4.9204 -5.5172 -2.8382 48 1 -4.0288 -3.2480 -2.5117 49 1 -2.7080 -2.7121 -0.5095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707229612.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:27 Heat of formation + Delta-G solvation = 35.803312 kcal Electronic energy + Delta-G solvation = -31251.161751 eV Core-core repulsion = 27181.178998 eV Total energy + Delta-G solvation = -4069.982753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.51738 -39.14966 -37.14610 -36.93893 -35.39251 -34.70538 -32.18937 -31.31143 -30.27710 -29.54664 -28.53931 -27.59761 -26.78292 -25.42746 -23.51458 -22.88595 -22.70762 -21.77990 -21.25764 -20.08033 -19.11536 -17.70551 -16.82034 -16.61296 -16.18467 -15.84627 -15.57446 -15.44427 -15.19422 -14.79135 -14.49451 -14.28592 -14.03492 -13.72765 -13.48358 -13.31184 -13.19055 -13.03991 -12.85860 -12.72535 -12.00916 -12.00772 -11.78385 -11.66220 -11.57152 -11.23309 -11.12588 -10.92859 -10.71628 -10.63421 -10.54983 -10.27654 -9.74760 -9.68232 -9.67241 -9.58920 -9.34252 -8.66751 -8.40524 -8.30791 -8.27978 -7.76895 -6.42027 -5.44030 -2.90245 1.00219 1.56975 2.11807 2.85778 3.23090 3.50751 3.57420 3.59693 3.66736 4.05842 4.46749 4.54762 4.69600 4.70518 4.78915 4.94484 5.09931 5.14150 5.18682 5.28406 5.40571 5.51922 5.56084 5.58072 5.63551 5.67682 5.68476 5.77173 5.81535 5.89761 6.14256 6.22605 6.31177 6.40190 6.44999 6.48326 6.50477 6.67286 6.70843 6.76201 6.83149 7.01721 7.10907 7.26446 7.36547 7.71227 7.77681 8.03557 8.17157 8.39627 8.66861 8.75946 9.51618 10.17480 10.69603 11.58154 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003345 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.245637 B = 8369.166772 C = 9918.934849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.594 5.594 3 C -0.254 4.254 4 H 0.064 0.936 5 C 0.002 3.998 6 N -0.895 5.895 7 Si 0.896 3.104 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.293 1.293 11 C 0.156 3.844 12 C 0.043 3.957 13 O -0.343 6.343 14 C 0.046 3.954 15 C 0.125 3.875 16 N -0.617 5.617 17 C 0.067 3.933 18 C 0.578 3.422 19 O -0.487 6.487 20 C -0.208 4.208 21 C 0.071 3.929 22 N -0.585 5.585 23 H 0.416 0.584 24 C 0.083 3.917 25 C -0.136 4.136 26 C -0.099 4.099 27 C -0.145 4.145 28 C -0.054 4.054 29 C -0.064 4.064 30 H 0.041 0.959 31 H 0.023 0.977 32 H -0.002 1.002 33 H 0.248 0.752 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.016 0.984 38 H 0.048 0.952 39 H 0.032 0.968 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.117 0.883 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 -24.347 4.571 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.316 5.316 3 C -0.385 4.385 4 H 0.081 0.919 5 C -0.197 4.197 6 N -0.540 5.540 7 Si 0.727 3.273 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.221 1.221 11 C 0.028 3.972 12 C -0.037 4.037 13 O -0.261 6.261 14 C -0.033 4.033 15 C 0.002 3.998 16 N -0.353 5.353 17 C -0.077 4.077 18 C 0.366 3.634 19 O -0.359 6.359 20 C -0.220 4.220 21 C -0.060 4.060 22 N -0.187 5.187 23 H 0.253 0.747 24 C -0.022 4.022 25 C -0.156 4.156 26 C -0.118 4.118 27 C -0.164 4.164 28 C -0.072 4.072 29 C -0.068 4.068 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.016 0.984 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.210 0.790 46 H 0.135 0.865 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.537 -23.653 4.277 25.191 hybrid contribution 0.751 0.292 0.385 0.892 sum -6.787 -23.361 4.662 24.770 Atomic orbital electron populations 1.20604 0.81538 0.94229 0.99902 1.43902 1.02374 0.99941 1.85423 1.19220 0.98255 0.85784 1.35196 0.91854 1.24987 0.98197 0.98044 0.98439 1.70160 1.20253 1.26357 1.37261 0.86317 0.78401 0.85231 0.77400 1.20536 1.21787 1.22050 1.20814 0.95936 0.89046 0.91414 1.23436 0.85701 0.96174 0.98392 1.88202 1.28825 1.86908 1.22125 1.22749 0.96451 0.97252 0.86833 1.21468 0.94108 0.90206 0.93994 1.47515 1.52181 1.06510 1.29096 1.22217 1.01276 0.84470 0.99699 1.17203 0.78736 0.87849 0.79645 1.90952 1.60996 1.23448 1.60485 1.20224 1.09541 0.93871 0.98316 1.23222 0.95470 0.91153 0.96120 1.41587 1.46236 1.12488 1.18354 0.74717 1.18286 1.01765 0.91306 0.90873 1.19939 1.02519 0.99951 0.93240 1.20816 0.99750 0.92896 0.98321 1.21027 1.00182 0.96819 0.98354 1.20870 0.95322 0.99419 0.91620 1.18769 1.00278 0.92877 0.94876 0.94088 0.95830 0.98381 0.94189 0.92955 0.94093 0.93829 0.96611 0.93378 0.95036 0.88654 0.90001 0.92775 0.90580 0.91048 0.78955 0.86460 0.85821 0.85662 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 5.22 8.63 59.85 0.52 5.74 16 2 N -0.59 -16.68 2.88 -181.12 -0.52 -17.20 16 3 C -0.25 -7.55 9.65 -15.06 -0.15 -7.70 16 4 H 0.06 1.82 7.86 -52.48 -0.41 1.41 16 5 C 0.00 0.06 5.06 -17.43 -0.09 -0.03 16 6 N -0.90 -28.20 10.81 55.49 0.60 -27.60 16 7 Si 0.90 23.11 29.58 -169.99 -5.03 18.08 16 8 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 10 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 11 C 0.16 3.66 6.11 -4.04 -0.02 3.63 16 12 C 0.04 0.92 6.28 37.16 0.23 1.15 16 13 O -0.34 -7.50 8.45 -48.72 -0.41 -7.91 16 14 C 0.05 0.77 6.28 37.16 0.23 1.00 16 15 C 0.12 1.81 5.82 -4.04 -0.02 1.79 16 16 N -0.62 -8.40 2.86 -183.04 -0.52 -8.92 16 17 C 0.07 0.53 8.67 59.84 0.52 1.05 16 18 C 0.58 9.91 7.34 -12.75 -0.09 9.82 16 19 O -0.49 -10.82 14.76 -8.27 -0.12 -10.94 16 20 C -0.21 -3.01 6.11 -103.31 -0.63 -3.64 16 21 C 0.07 0.67 9.79 -16.62 -0.16 0.51 16 22 N -0.58 -4.99 5.99 -10.48 -0.06 -5.05 16 23 H 0.42 1.89 8.96 -40.82 -0.37 1.53 16 24 C 0.08 0.99 7.26 -83.97 -0.61 0.38 16 25 C -0.14 -1.42 10.07 -39.43 -0.40 -1.81 16 26 C -0.10 -1.07 10.01 -39.56 -0.40 -1.47 16 27 C -0.14 -1.88 10.03 -39.57 -0.40 -2.28 16 28 C -0.05 -0.86 9.86 -39.37 -0.39 -1.25 16 29 C -0.06 -0.97 6.27 -104.95 -0.66 -1.63 16 30 H 0.04 1.30 7.34 -51.93 -0.38 0.92 16 31 H 0.02 0.70 7.38 -51.93 -0.38 0.32 16 32 H 0.00 -0.07 7.83 -51.93 -0.41 -0.47 16 33 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.05 1.14 8.03 -51.93 -0.42 0.73 16 35 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.10 1.71 7.51 -51.93 -0.39 1.32 16 41 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.05 0.30 7.40 -51.93 -0.38 -0.08 16 43 H 0.08 0.55 5.30 -51.93 -0.27 0.27 16 44 H 0.07 0.46 8.03 -51.93 -0.42 0.05 16 45 H 0.19 1.06 4.30 -52.48 -0.23 0.83 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 49 H 0.14 2.54 7.48 -52.49 -0.39 2.15 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -39.24 398.29 -9.95 -49.20 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.37 Total: -0.89 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.51 Total: 5.25 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.51 Total: -58.78 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.53 Total: -18.86 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.03 Total: 18.08 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.24 -9.95 -49.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707229612.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.000 kcal (2) G-P(sol) polarization free energy of solvation -39.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds