Wall clock time and date at job start Sat Apr 11 2020 07:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 119.99633 * 2 1 4 4 H 1.08006 * 120.00244 * 202.84979 * 3 2 1 5 5 C 1.38809 * 120.00455 * 22.85489 * 3 2 1 6 6 N 1.31618 * 119.99567 * 14.89264 * 5 3 2 7 7 Si 1.86800 * 120.00378 * 194.89734 * 5 3 2 8 8 H 1.48495 * 109.46964 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47315 * 120.00030 * 7 5 3 10 10 H 1.48503 * 109.46886 * 239.99905 * 7 5 3 11 11 C 1.46497 * 120.00208 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46782 * 269.99781 * 11 2 1 13 13 O 1.42895 * 109.47412 * 64.99978 * 12 11 2 14 14 C 1.42896 * 113.99968 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47118 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47223 * 64.99903 * 15 14 13 17 17 C 1.46496 * 120.00016 * 90.00063 * 16 15 14 18 18 C 1.34780 * 120.00001 * 270.00232 * 16 15 14 19 19 O 1.21674 * 119.99779 * 5.65390 * 18 16 15 20 20 C 1.46904 * 119.99994 * 185.66027 * 18 16 15 21 21 C 1.36377 * 126.77290 * 7.16803 * 20 18 16 22 22 N 1.35464 * 109.77186 * 179.82853 * 21 20 18 23 23 H 0.97004 * 124.78703 * 180.22040 * 22 21 20 24 24 C 1.37963 * 110.42732 * 0.44872 * 22 21 20 25 25 C 1.39125 * 133.19062 * 179.72441 * 24 22 21 26 26 C 1.37764 * 119.93364 * 180.02562 * 25 24 22 27 27 C 1.38755 * 120.62743 * 359.95674 * 26 25 24 28 28 C 1.37755 * 120.30626 * 0.04757 * 27 26 25 29 29 C 1.39271 * 119.67076 * 359.97108 * 28 27 26 30 30 H 1.09006 * 109.46866 * 275.14372 * 1 2 3 31 31 H 1.09001 * 109.47720 * 35.14467 * 1 2 3 32 32 H 1.09000 * 109.47470 * 155.14943 * 1 2 3 33 33 H 0.97006 * 120.00422 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47461 * 149.99337 * 11 2 1 35 35 H 1.09006 * 109.46981 * 29.99580 * 11 2 1 36 36 H 1.08999 * 109.46792 * 304.99596 * 12 11 2 37 37 H 1.08999 * 109.46966 * 185.00151 * 12 11 2 38 38 H 1.08996 * 109.47554 * 59.99825 * 14 13 12 39 39 H 1.09002 * 109.47507 * 299.99687 * 14 13 12 40 40 H 1.09000 * 109.47201 * 304.99762 * 15 14 13 41 41 H 1.09005 * 109.47381 * 184.99871 * 15 14 13 42 42 H 1.09005 * 109.47206 * 95.62908 * 17 16 15 43 43 H 1.09003 * 109.47335 * 215.62157 * 17 16 15 44 44 H 1.08996 * 109.47276 * 335.62686 * 17 16 15 45 45 H 1.08003 * 125.11164 * 0.02562 * 21 20 18 46 46 H 1.08004 * 120.03083 * 0.03041 * 25 24 22 47 47 H 1.07990 * 119.68471 * 179.97438 * 26 25 24 48 48 H 1.08004 * 119.84310 * 180.02562 * 27 26 25 49 49 H 1.07998 * 120.16013 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1661 1.2227 -0.3632 5 6 1.5373 2.3409 0.4669 6 7 0.4290 2.2591 1.1721 7 14 2.2861 4.0112 0.0942 8 1 3.5220 3.8314 -0.7091 9 1 1.3125 4.8305 -0.6712 10 1 2.6194 4.6994 1.3672 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7109 1.4418 13 8 1.2062 -1.9943 2.0806 14 6 1.3326 -2.4177 3.4395 15 6 -0.0564 -2.6910 4.0199 16 7 -0.6655 -3.8226 3.3165 17 6 -0.4604 -5.1872 3.8084 18 6 -1.4146 -3.6083 2.2167 19 8 -1.5010 -2.4886 1.7483 20 6 -2.1268 -4.7264 1.5837 21 6 -2.2389 -5.9985 2.0621 22 7 -2.9729 -6.7475 1.2047 23 1 -3.1898 -7.6841 1.3342 24 6 -3.3643 -5.9918 0.1189 25 6 -4.1097 -6.2770 -1.0207 26 6 -4.3416 -5.2914 -1.9549 27 6 -3.8390 -4.0111 -1.7714 28 6 -3.0985 -3.7092 -0.6497 29 6 -2.8561 -4.6961 0.3026 30 1 -0.3633 0.0921 1.0236 31 1 -0.3634 0.8403 -0.5916 32 1 -0.3634 -0.9325 -0.4319 33 1 0.0008 3.0661 1.4981 34 1 3.1499 -1.1382 -0.5144 35 1 1.6084 -2.0282 -0.5147 36 1 2.9643 -0.9138 1.9810 37 1 3.0733 -2.6068 1.4427 38 1 1.8209 -1.6350 4.0201 39 1 1.9303 -3.3282 3.4824 40 1 -0.6822 -1.8071 3.8965 41 1 0.0329 -2.9278 5.0801 42 1 -1.3005 -5.4758 4.4401 43 1 -0.3897 -5.8715 2.9629 44 1 0.4616 -5.2296 4.3883 45 1 -1.8098 -6.3543 2.9872 46 1 -4.5062 -7.2700 -1.1728 47 1 -4.9204 -5.5172 -2.8382 48 1 -4.0288 -3.2480 -2.5117 49 1 -2.7080 -2.7121 -0.5095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707229612.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:26 Heat of formation + Delta-G solvation = 8.566669 kcal Electronic energy + Delta-G solvation = -31252.342821 eV Core-core repulsion = 27181.178998 eV Total energy + Delta-G solvation = -4071.163823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.41480 -40.30275 -38.77922 -37.88445 -37.15674 -36.23096 -33.54260 -33.03977 -31.56826 -30.47670 -29.99894 -29.03602 -27.80018 -27.68968 -24.94069 -24.53434 -23.80972 -22.65805 -22.35553 -22.14177 -20.13344 -18.75384 -18.61918 -17.78807 -17.55605 -17.10738 -16.89748 -16.72307 -16.48220 -16.26638 -15.96086 -15.53494 -15.30080 -14.96400 -14.93603 -14.90451 -14.67010 -14.18526 -14.00534 -13.93333 -13.70096 -13.44717 -13.11031 -12.90772 -12.70810 -12.66790 -12.59677 -12.55970 -12.43333 -12.29638 -12.17337 -12.00456 -11.89044 -11.76119 -11.66099 -10.68139 -10.63235 -10.59537 -10.25929 -9.48667 -9.23422 -8.73048 -8.69349 -7.75301 -5.26124 0.07633 0.60397 1.14873 1.43791 1.46264 1.57267 2.05027 2.29063 2.52674 2.59189 3.00551 3.06977 3.34679 3.74673 3.75660 3.89053 3.90838 4.19808 4.21609 4.25081 4.30276 4.35997 4.39368 4.46873 4.53409 4.55897 4.57347 4.62342 4.68449 4.73988 4.78701 4.81285 4.92275 4.93546 4.98875 5.05353 5.15030 5.18453 5.31293 5.47555 5.54837 5.65194 5.66589 5.72090 5.79618 5.91633 6.16424 6.35021 6.61254 6.64771 6.70798 7.17444 7.60740 7.90830 8.41333 9.27345 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003345 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.245637 B = 8369.166772 C = 9918.934849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.219 3.781 2 N -0.609 5.609 3 C -0.267 4.267 4 H 0.075 0.925 5 C -0.057 4.057 6 N -0.935 5.935 7 Si 0.972 3.028 8 H -0.262 1.262 9 H -0.293 1.293 10 H -0.291 1.291 11 C 0.151 3.849 12 C 0.053 3.947 13 O -0.377 6.377 14 C 0.040 3.960 15 C 0.129 3.871 16 N -0.614 5.614 17 C 0.054 3.946 18 C 0.567 3.433 19 O -0.564 6.564 20 C -0.270 4.270 21 C 0.125 3.875 22 N -0.560 5.560 23 H 0.442 0.558 24 C 0.075 3.925 25 C -0.117 4.117 26 C -0.105 4.105 27 C -0.147 4.147 28 C -0.103 4.103 29 C -0.097 4.097 30 H 0.003 0.997 31 H -0.004 1.004 32 H 0.000 1.000 33 H 0.244 0.756 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.133 0.867 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.242 0.758 46 H 0.161 0.839 47 H 0.159 0.841 48 H 0.129 0.871 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 -29.061 5.495 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.332 5.332 3 C -0.397 4.397 4 H 0.093 0.907 5 C -0.252 4.252 6 N -0.581 5.581 7 Si 0.800 3.200 8 H -0.186 1.186 9 H -0.220 1.220 10 H -0.218 1.218 11 C 0.024 3.976 12 C -0.026 4.026 13 O -0.296 6.296 14 C -0.038 4.038 15 C 0.006 3.994 16 N -0.348 5.348 17 C -0.087 4.087 18 C 0.358 3.642 19 O -0.442 6.442 20 C -0.281 4.281 21 C -0.009 4.009 22 N -0.163 5.163 23 H 0.284 0.716 24 C -0.030 4.030 25 C -0.137 4.137 26 C -0.124 4.124 27 C -0.166 4.166 28 C -0.122 4.122 29 C -0.102 4.102 30 H 0.021 0.979 31 H 0.015 0.985 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.151 0.849 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.258 0.742 46 H 0.179 0.821 47 H 0.176 0.824 48 H 0.147 0.853 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.727 -28.484 5.220 29.730 hybrid contribution 0.489 1.577 0.140 1.657 sum -6.238 -26.907 5.360 28.137 Atomic orbital electron populations 1.20011 0.82748 0.92902 0.96919 1.44073 1.01880 1.01514 1.85740 1.19637 0.98704 0.86592 1.34815 0.90715 1.25904 0.98816 1.02126 0.98374 1.70384 1.22036 1.27070 1.38606 0.85136 0.77949 0.79759 0.77183 1.18573 1.22011 1.21771 1.21009 0.96134 0.87087 0.93349 1.23134 0.86118 0.97093 0.96295 1.88207 1.29151 1.87391 1.24883 1.23033 0.98291 0.98231 0.84256 1.21434 0.91980 0.89435 0.96563 1.47594 1.50734 1.08564 1.27913 1.22635 1.04064 0.81159 1.00835 1.17796 0.78728 0.87680 0.80029 1.90916 1.63896 1.26432 1.62949 1.20132 1.12913 0.95446 0.99564 1.23783 0.92015 0.88885 0.96173 1.41585 1.44592 1.13406 1.16736 0.71617 1.18408 1.01996 0.90299 0.92308 1.20444 1.00209 1.01478 0.91600 1.21180 0.99745 0.91604 0.99854 1.21204 0.99490 0.98596 0.97280 1.20663 0.98814 0.98136 0.94563 1.19117 1.01269 0.94375 0.95413 0.97875 0.98493 0.98148 0.94703 0.90981 0.94179 0.96156 0.92507 0.94117 0.91626 0.93718 0.84903 0.89262 0.89438 0.88606 0.74217 0.82101 0.82355 0.85330 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.22 13.77 8.63 127.77 1.10 14.87 16 2 N -0.61 -35.95 2.88 -726.92 -2.10 -38.05 16 3 C -0.27 -16.33 9.65 84.03 0.81 -15.52 16 4 H 0.08 4.32 7.86 -2.91 -0.02 4.29 16 5 C -0.06 -3.54 5.06 84.86 0.43 -3.11 16 6 N -0.93 -62.30 10.81 21.65 0.23 -62.07 16 7 Si 0.97 48.92 29.58 68.60 2.03 50.95 16 8 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 9 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 10 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 11 C 0.15 7.26 6.11 86.38 0.53 7.79 16 12 C 0.05 2.31 6.28 71.98 0.45 2.76 16 13 O -0.38 -17.35 8.45 -136.09 -1.15 -18.50 16 14 C 0.04 1.34 6.28 71.98 0.45 1.79 16 15 C 0.13 3.81 5.82 86.38 0.50 4.31 16 16 N -0.61 -16.44 2.86 -851.24 -2.43 -18.87 16 17 C 0.05 0.63 8.67 127.77 1.11 1.73 16 18 C 0.57 20.82 7.34 86.51 0.63 21.46 16 19 O -0.56 -28.42 14.76 8.63 0.13 -28.29 16 20 C -0.27 -7.95 6.11 -19.02 -0.12 -8.06 16 21 C 0.12 1.93 9.79 83.70 0.82 2.75 16 22 N -0.56 -7.23 5.99 -187.08 -1.12 -8.35 16 23 H 0.44 1.43 8.96 -92.71 -0.83 0.59 16 24 C 0.08 1.65 7.26 38.92 0.28 1.94 16 25 C -0.12 -2.08 10.07 22.37 0.23 -1.85 16 26 C -0.10 -2.13 10.01 22.28 0.22 -1.90 16 27 C -0.15 -4.15 10.03 22.28 0.22 -3.93 16 28 C -0.10 -3.76 9.86 22.40 0.22 -3.54 16 29 C -0.10 -3.15 6.27 -20.08 -0.13 -3.28 16 30 H 0.00 0.20 7.34 -2.38 -0.02 0.19 16 31 H 0.00 -0.24 7.38 -2.39 -0.02 -0.26 16 32 H 0.00 0.00 7.83 -2.39 -0.02 -0.02 16 33 H 0.24 15.68 8.31 -92.70 -0.77 14.91 16 34 H 0.07 3.14 8.03 -2.39 -0.02 3.12 16 35 H 0.04 1.92 7.86 -2.38 -0.02 1.90 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.78 7.51 -2.39 -0.02 1.76 16 41 H 0.13 2.48 8.07 -2.38 -0.02 2.46 16 42 H 0.09 0.48 7.40 -2.38 -0.02 0.46 16 43 H 0.09 0.83 5.30 -2.39 -0.01 0.82 16 44 H 0.10 0.72 8.03 -2.39 -0.02 0.71 16 45 H 0.24 1.20 4.30 -2.91 -0.01 1.19 16 46 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.16 2.06 8.06 -2.92 -0.02 2.04 16 48 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 49 H 0.09 3.95 7.48 -2.91 -0.02 3.93 16 Total: -1.00 -99.01 398.29 3.50 -95.51 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.14 Total: 9.47 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 7.77 Total: 18.21 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -5.41 Total: -127.35 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -1.02 Total: -46.79 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.95 kcal Total: -99.01 3.50 -95.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707229612.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.078 kcal (2) G-P(sol) polarization free energy of solvation -99.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds