Wall clock time and date at job start Sat Apr 11 2020 07:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34781 * 120.00140 * 2 1 4 4 O 1.21544 * 119.99971 * 0.02562 * 3 2 1 5 5 C 1.47865 * 119.99792 * 180.02562 * 3 2 1 6 6 C 1.39708 * 120.07408 * 0.02562 * 5 3 2 7 7 C 1.38058 * 120.14226 * 179.97438 * 6 5 3 8 8 C 1.38098 * 120.29494 * 359.76084 * 7 6 5 9 9 C 1.39661 * 120.14812 * 0.51470 * 8 7 6 10 10 C 1.47855 * 120.07599 * 179.73766 * 9 8 7 11 11 O 1.21547 * 120.00115 * 145.19022 * 10 9 8 12 12 N 1.34779 * 120.00040 * 324.91236 * 10 9 8 13 13 C 1.46931 * 120.63200 * 174.21270 * 12 10 9 14 14 C 1.53619 * 108.54366 * 126.37051 * 13 12 10 15 15 C 1.53040 * 109.24050 * 54.85671 * 14 13 12 16 16 C 1.53038 * 109.54028 * 298.50963 * 15 14 13 17 17 H 1.09001 * 109.52698 * 301.40234 * 16 15 14 18 18 C 1.53000 * 109.50056 * 181.31543 * 16 15 14 19 19 N 1.46505 * 109.47106 * 174.63687 * 18 16 15 20 20 C 1.36933 * 119.99446 * 174.87991 * 19 18 16 21 21 H 1.07992 * 120.00627 * 4.66299 * 20 19 18 22 22 C 1.38819 * 119.99977 * 184.65461 * 20 19 18 23 23 N 1.31614 * 120.00408 * 184.54951 * 22 20 19 24 24 Si 1.86804 * 119.99427 * 4.55650 * 22 20 19 25 25 H 1.48495 * 109.47441 * 94.10132 * 24 22 20 26 26 H 1.48509 * 109.46788 * 214.10045 * 24 22 20 27 27 H 1.48504 * 109.47377 * 334.09450 * 24 22 20 28 28 C 1.46920 * 120.62958 * 354.49621 * 12 10 9 29 29 C 1.39288 * 120.07116 * 180.02562 * 5 3 2 30 30 H 1.08994 * 109.47386 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46742 * 299.99735 * 1 2 3 32 32 H 1.09000 * 109.47472 * 59.99369 * 1 2 3 33 33 H 0.96998 * 120.00076 * 180.02562 * 2 1 3 34 34 H 1.08001 * 119.92877 * 359.97438 * 6 5 3 35 35 H 1.07998 * 119.84663 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.92522 * 180.27902 * 8 7 6 37 37 H 1.09003 * 109.58676 * 246.20342 * 13 12 10 38 38 H 1.09000 * 109.58115 * 6.62526 * 13 12 10 39 39 H 1.09000 * 109.63432 * 294.87004 * 14 13 12 40 40 H 1.08991 * 109.46075 * 174.74256 * 14 13 12 41 41 H 1.09002 * 109.45671 * 178.49192 * 15 14 13 42 42 H 1.08995 * 109.44960 * 58.52286 * 15 14 13 43 43 H 1.08998 * 109.47334 * 294.64370 * 18 16 15 44 44 H 1.09005 * 109.46822 * 54.64374 * 18 16 15 45 45 H 0.96996 * 120.00190 * 354.88530 * 19 18 16 46 46 H 0.96996 * 119.99829 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.59044 * 353.36954 * 28 12 10 48 48 H 1.08997 * 109.59295 * 113.65280 * 28 12 10 49 49 H 1.08007 * 120.14664 * 0.02562 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6175 1.1671 -0.0006 6 6 4.3176 -0.0419 -0.0017 7 6 5.6981 -0.0436 -0.0027 8 6 6.3962 1.1479 -0.0077 9 6 5.7089 2.3636 -0.0009 10 6 6.4580 3.6383 -0.0004 11 8 6.0180 4.6020 -0.5963 12 7 7.6259 3.7334 0.6656 13 6 8.4439 4.9504 0.5725 14 6 8.7371 5.4520 1.9945 15 6 9.3795 4.3238 2.8048 16 6 8.4080 3.1453 2.9009 17 1 7.4814 3.4744 3.3713 18 6 9.0382 2.0309 3.7388 19 7 8.0611 0.9576 3.9379 20 6 8.4330 -0.1978 4.5718 21 1 9.4239 -0.2886 4.9915 22 6 7.5363 -1.2524 4.6752 23 7 7.8610 -2.3276 5.3612 24 14 5.8685 -1.1453 3.8405 25 1 5.9439 -1.7807 2.5005 26 1 4.8555 -1.8504 4.6664 27 1 5.4802 0.2803 3.6913 28 6 8.1083 2.6197 1.4935 29 6 4.3155 2.3725 0.0000 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.9499 -0.8400 -0.0004 34 1 3.7775 -0.9772 -0.0017 35 1 6.2344 -0.9810 -0.0040 36 1 7.4762 1.1395 -0.0131 37 1 9.3798 4.7234 0.0619 38 1 7.8993 5.7151 0.0187 39 1 7.8075 5.7599 2.4732 40 1 9.4200 6.3001 1.9468 41 1 9.6136 4.6841 3.8066 42 1 10.2961 3.9996 2.3121 43 1 9.9114 1.6357 3.2198 44 1 9.3408 2.4309 4.7066 45 1 7.1508 1.0653 3.6207 46 1 7.2342 -3.0643 5.4337 47 1 7.3423 1.8461 1.5478 48 1 9.0159 2.2048 1.0553 49 1 3.7791 3.3099 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714093123.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:34 Heat of formation + Delta-G solvation = -21.882154 kcal Electronic energy + Delta-G solvation = -31210.678664 eV Core-core repulsion = 27138.194482 eV Total energy + Delta-G solvation = -4072.484183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.89108 -39.97163 -38.28574 -37.60672 -35.01538 -34.91420 -33.33366 -32.31566 -31.32386 -31.19119 -30.19245 -27.26227 -25.95048 -25.89209 -23.81407 -23.55059 -22.52801 -21.34466 -20.99528 -20.37509 -19.55671 -18.25418 -17.64471 -16.85850 -16.53590 -16.20337 -16.00419 -15.46754 -15.26812 -14.89629 -14.72063 -14.56744 -14.44700 -14.08613 -13.86744 -13.79954 -13.55060 -13.35448 -13.07276 -12.89169 -12.78222 -12.62389 -12.52446 -12.36921 -12.08150 -11.79107 -11.57072 -11.43941 -11.16530 -10.97140 -10.77109 -10.58661 -10.34768 -10.23978 -10.13945 -9.89955 -9.66989 -9.45145 -9.19765 -9.06158 -8.95865 -8.65763 -7.30740 -5.84887 -3.20589 0.50304 0.95404 2.43127 2.74365 2.94290 3.02355 3.24319 3.30699 3.35556 3.70053 4.27046 4.41257 4.49971 4.66199 4.67277 4.76529 4.84856 4.89516 4.93389 4.97806 5.01228 5.20596 5.24176 5.25422 5.28888 5.41623 5.45057 5.51401 5.53694 5.63500 5.71698 5.75082 5.77232 5.87371 5.94805 5.97870 6.01334 6.06723 6.09422 6.11818 6.15071 6.25704 6.43363 6.57888 6.59100 6.67316 7.18214 7.29313 7.92579 7.96021 8.06016 8.33993 9.13362 9.85496 10.05573 11.33342 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007507 B = 0.005199 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3729.121606 B = 5384.171852 C = 8444.558332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.562 3.438 4 O -0.533 6.533 5 C -0.148 4.148 6 C -0.065 4.065 7 C -0.126 4.126 8 C -0.060 4.060 9 C -0.140 4.140 10 C 0.564 3.436 11 O -0.538 6.538 12 N -0.605 5.605 13 C 0.112 3.888 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.113 4.113 17 H 0.074 0.926 18 C 0.163 3.837 19 N -0.757 5.757 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.932 5.932 24 Si 0.877 3.123 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.098 3.902 29 C -0.005 4.005 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.402 0.598 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.029 0.971 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.100 0.900 48 H 0.076 0.924 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 6.798 -12.971 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.350 3.650 4 O -0.410 6.410 5 C -0.151 4.151 6 C -0.083 4.083 7 C -0.144 4.144 8 C -0.079 4.079 9 C -0.143 4.143 10 C 0.353 3.647 11 O -0.416 6.416 12 N -0.337 5.337 13 C -0.010 4.010 14 C -0.171 4.171 15 C -0.150 4.150 16 C -0.133 4.133 17 H 0.093 0.907 18 C 0.035 3.965 19 N -0.404 5.404 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.707 3.293 25 H -0.204 1.204 26 H -0.219 1.219 27 H -0.204 1.204 28 C -0.024 4.024 29 C -0.025 4.025 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.237 0.763 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.195 0.805 46 H 0.069 0.931 47 H 0.118 0.882 48 H 0.094 0.906 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.008 7.901 -13.174 16.158 hybrid contribution -0.961 -0.720 -0.235 1.224 sum -5.969 7.181 -13.410 16.340 Atomic orbital electron populations 1.21564 0.79032 1.02414 1.02557 1.45702 1.08028 1.08631 1.76205 1.18219 0.87063 0.83788 0.75964 1.90783 1.69834 1.31077 1.49298 1.19783 0.92829 0.94207 1.08267 1.21485 0.94878 0.96895 0.95090 1.21183 0.93935 0.98866 1.00427 1.21826 1.01100 0.91390 0.93561 1.19830 0.93976 0.93494 1.06999 1.18225 0.80302 0.87423 0.78745 1.90763 1.67626 1.38347 1.44893 1.48056 1.20879 1.17554 1.47224 1.21727 0.94795 0.86986 0.97538 1.21983 1.01492 0.98322 0.95332 1.21517 0.98230 0.94681 1.00571 1.21773 0.99931 0.96430 0.95132 0.90744 1.20652 0.92414 0.87277 0.96126 1.42839 1.09100 1.16512 1.71932 1.19055 1.00394 0.89818 1.28067 0.89196 1.24679 0.97728 0.96201 1.00340 1.69703 1.36192 1.07189 1.44888 0.86637 0.85583 0.77212 0.79849 1.20450 1.21896 1.20432 1.22400 1.00899 0.88643 0.90416 1.21228 0.92099 0.98269 0.90898 0.90438 0.91975 0.92019 0.76259 0.85235 0.84098 0.83904 0.91256 0.89028 0.91487 0.90721 0.91250 0.91491 0.94804 0.95316 0.80535 0.93070 0.88236 0.90562 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.70 59.84 0.64 1.37 16 2 N -0.73 -7.49 5.66 -68.05 -0.39 -7.88 16 3 C 0.56 7.89 7.77 -12.32 -0.10 7.79 16 4 O -0.53 -9.25 16.34 5.33 0.09 -9.16 16 5 C -0.15 -2.05 5.87 -105.02 -0.62 -2.67 16 6 C -0.06 -0.78 9.54 -39.10 -0.37 -1.15 16 7 C -0.13 -1.60 10.02 -39.70 -0.40 -2.00 16 8 C -0.06 -0.80 7.35 -39.10 -0.29 -1.09 16 9 C -0.14 -2.07 5.30 -105.02 -0.56 -2.62 16 10 C 0.56 8.75 7.39 -12.32 -0.09 8.66 16 11 O -0.54 -9.71 16.23 5.32 0.09 -9.62 16 12 N -0.60 -8.09 2.97 -173.61 -0.51 -8.61 16 13 C 0.11 1.26 6.47 -3.49 -0.02 1.23 16 14 C -0.13 -1.36 6.10 -26.39 -0.16 -1.52 16 15 C -0.11 -1.24 5.16 -26.69 -0.14 -1.38 16 16 C -0.11 -1.59 2.36 -90.50 -0.21 -1.80 16 17 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 18 C 0.16 2.85 5.65 -4.04 -0.02 2.82 16 19 N -0.76 -16.70 5.11 -59.90 -0.31 -17.01 16 20 C -0.24 -6.52 10.47 -15.06 -0.16 -6.68 16 21 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 23 N -0.93 -28.16 13.97 55.49 0.78 -27.38 16 24 Si 0.88 20.67 27.99 -169.99 -4.76 15.92 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.32 6.17 56.52 0.35 -5.97 16 28 C 0.10 1.33 3.86 -3.71 -0.01 1.31 16 29 C -0.01 -0.08 9.15 -38.78 -0.35 -0.44 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 3.04 6.85 -40.82 -0.28 2.76 16 34 H 0.13 1.13 6.39 -52.49 -0.34 0.80 16 35 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.14 1.69 5.98 -52.49 -0.31 1.38 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.36 7.91 4.84 -40.82 -0.20 7.71 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.10 1.49 3.77 -51.93 -0.20 1.29 16 48 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 49 H 0.15 2.34 7.58 -52.48 -0.40 1.95 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -34.83 391.74 -9.25 -44.08 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -7.19 Total: 11.82 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.96 Total: 1.93 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.43 Total: -60.88 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.17 Total: -18.78 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.76 Total: 15.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.83 -9.25 -44.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714093123.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.199 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds