Wall clock time and date at job start Sat Apr 11 2020 07:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34781 * 120.00140 * 2 1 4 4 O 1.21544 * 119.99971 * 0.02562 * 3 2 1 5 5 C 1.47865 * 119.99792 * 180.02562 * 3 2 1 6 6 C 1.39708 * 120.07408 * 0.02562 * 5 3 2 7 7 C 1.38058 * 120.14226 * 179.97438 * 6 5 3 8 8 C 1.38098 * 120.29494 * 359.76084 * 7 6 5 9 9 C 1.39661 * 120.14812 * 0.51470 * 8 7 6 10 10 C 1.47855 * 120.07599 * 179.73766 * 9 8 7 11 11 O 1.21547 * 120.00115 * 145.19022 * 10 9 8 12 12 N 1.34779 * 120.00040 * 324.91236 * 10 9 8 13 13 C 1.46931 * 120.63200 * 174.21270 * 12 10 9 14 14 C 1.53619 * 108.54366 * 126.37051 * 13 12 10 15 15 C 1.53040 * 109.24050 * 54.85671 * 14 13 12 16 16 C 1.53038 * 109.54028 * 298.50963 * 15 14 13 17 17 H 1.09001 * 109.52698 * 301.40234 * 16 15 14 18 18 C 1.53000 * 109.50056 * 181.31543 * 16 15 14 19 19 N 1.46505 * 109.47106 * 174.63687 * 18 16 15 20 20 C 1.36933 * 119.99446 * 174.87991 * 19 18 16 21 21 H 1.07992 * 120.00627 * 4.66299 * 20 19 18 22 22 C 1.38819 * 119.99977 * 184.65461 * 20 19 18 23 23 N 1.31614 * 120.00408 * 184.54951 * 22 20 19 24 24 Si 1.86804 * 119.99427 * 4.55650 * 22 20 19 25 25 H 1.48495 * 109.47441 * 94.10132 * 24 22 20 26 26 H 1.48509 * 109.46788 * 214.10045 * 24 22 20 27 27 H 1.48504 * 109.47377 * 334.09450 * 24 22 20 28 28 C 1.46920 * 120.62958 * 354.49621 * 12 10 9 29 29 C 1.39288 * 120.07116 * 180.02562 * 5 3 2 30 30 H 1.08994 * 109.47386 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46742 * 299.99735 * 1 2 3 32 32 H 1.09000 * 109.47472 * 59.99369 * 1 2 3 33 33 H 0.96998 * 120.00076 * 180.02562 * 2 1 3 34 34 H 1.08001 * 119.92877 * 359.97438 * 6 5 3 35 35 H 1.07998 * 119.84663 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.92522 * 180.27902 * 8 7 6 37 37 H 1.09003 * 109.58676 * 246.20342 * 13 12 10 38 38 H 1.09000 * 109.58115 * 6.62526 * 13 12 10 39 39 H 1.09000 * 109.63432 * 294.87004 * 14 13 12 40 40 H 1.08991 * 109.46075 * 174.74256 * 14 13 12 41 41 H 1.09002 * 109.45671 * 178.49192 * 15 14 13 42 42 H 1.08995 * 109.44960 * 58.52286 * 15 14 13 43 43 H 1.08998 * 109.47334 * 294.64370 * 18 16 15 44 44 H 1.09005 * 109.46822 * 54.64374 * 18 16 15 45 45 H 0.96996 * 120.00190 * 354.88530 * 19 18 16 46 46 H 0.96996 * 119.99829 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.59044 * 353.36954 * 28 12 10 48 48 H 1.08997 * 109.59295 * 113.65280 * 28 12 10 49 49 H 1.08007 * 120.14664 * 0.02562 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6175 1.1671 -0.0006 6 6 4.3176 -0.0419 -0.0017 7 6 5.6981 -0.0436 -0.0027 8 6 6.3962 1.1479 -0.0077 9 6 5.7089 2.3636 -0.0009 10 6 6.4580 3.6383 -0.0004 11 8 6.0180 4.6020 -0.5963 12 7 7.6259 3.7334 0.6656 13 6 8.4439 4.9504 0.5725 14 6 8.7371 5.4520 1.9945 15 6 9.3795 4.3238 2.8048 16 6 8.4080 3.1453 2.9009 17 1 7.4814 3.4744 3.3713 18 6 9.0382 2.0309 3.7388 19 7 8.0611 0.9576 3.9379 20 6 8.4330 -0.1978 4.5718 21 1 9.4239 -0.2886 4.9915 22 6 7.5363 -1.2524 4.6752 23 7 7.8610 -2.3276 5.3612 24 14 5.8685 -1.1453 3.8405 25 1 5.9439 -1.7807 2.5005 26 1 4.8555 -1.8504 4.6664 27 1 5.4802 0.2803 3.6913 28 6 8.1083 2.6197 1.4935 29 6 4.3155 2.3725 0.0000 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.9499 -0.8400 -0.0004 34 1 3.7775 -0.9772 -0.0017 35 1 6.2344 -0.9810 -0.0040 36 1 7.4762 1.1395 -0.0131 37 1 9.3798 4.7234 0.0619 38 1 7.8993 5.7151 0.0187 39 1 7.8075 5.7599 2.4732 40 1 9.4200 6.3001 1.9468 41 1 9.6136 4.6841 3.8066 42 1 10.2961 3.9996 2.3121 43 1 9.9114 1.6357 3.2198 44 1 9.3408 2.4309 4.7066 45 1 7.1508 1.0653 3.6207 46 1 7.2342 -3.0643 5.4337 47 1 7.3423 1.8461 1.5478 48 1 9.0159 2.2048 1.0553 49 1 3.7791 3.3099 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714093123.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:33 Heat of formation + Delta-G solvation = -45.903504 kcal Electronic energy + Delta-G solvation = -31211.720308 eV Core-core repulsion = 27138.194482 eV Total energy + Delta-G solvation = -4073.525827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96833 -41.02534 -39.33425 -38.79547 -36.60990 -35.87586 -34.50934 -33.83749 -32.52153 -32.28594 -31.59552 -28.10182 -27.38099 -26.98351 -24.86660 -24.73093 -23.90995 -22.48666 -22.19308 -21.49724 -20.56181 -19.60817 -19.21577 -17.97697 -17.53709 -17.23719 -17.01009 -16.60519 -16.48751 -16.32103 -15.88339 -15.83512 -15.52466 -15.39306 -15.04304 -14.89289 -14.76684 -14.46944 -14.27475 -14.06026 -14.02154 -13.80712 -13.49045 -13.36330 -13.27126 -13.09348 -12.77739 -12.76940 -12.52044 -12.18742 -12.00430 -11.86100 -11.81176 -11.59569 -11.42259 -11.34125 -11.05372 -10.90432 -10.39746 -10.23941 -10.02546 -9.72224 -9.23882 -7.97700 -5.31294 -0.50617 -0.11901 1.35599 1.38530 1.44928 1.50399 1.68446 1.90117 2.09938 2.52687 2.65907 3.21480 3.33119 3.48547 3.54417 3.68677 3.77999 3.85365 3.90811 3.93995 4.00604 4.05581 4.20650 4.29397 4.33410 4.43101 4.51850 4.55146 4.56750 4.71908 4.73651 4.76468 4.87019 4.88948 4.90308 4.97067 5.01213 5.05033 5.10007 5.12755 5.17880 5.25582 5.30466 5.45058 5.48189 5.58721 5.82266 6.17696 6.25515 6.34632 6.92111 7.02044 7.12534 7.88574 8.07248 9.23638 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007507 B = 0.005199 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3729.121606 B = 5384.171852 C = 8444.558332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.717 5.717 3 C 0.556 3.444 4 O -0.578 6.578 5 C -0.156 4.156 6 C -0.056 4.056 7 C -0.133 4.133 8 C -0.059 4.059 9 C -0.153 4.153 10 C 0.559 3.441 11 O -0.574 6.574 12 N -0.598 5.598 13 C 0.106 3.894 14 C -0.125 4.125 15 C -0.106 4.106 16 C -0.104 4.104 17 H 0.056 0.944 18 C 0.162 3.838 19 N -0.758 5.758 20 C -0.232 4.232 21 H 0.057 0.943 22 C -0.059 4.059 23 N -0.983 5.983 24 Si 0.939 3.061 25 H -0.240 1.240 26 H -0.306 1.306 27 H -0.269 1.269 28 C 0.100 3.900 29 C -0.024 4.024 30 H 0.117 0.883 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.418 0.582 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.024 0.976 45 H 0.364 0.636 46 H 0.257 0.743 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 6.080 -14.349 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.344 3.656 4 O -0.459 6.459 5 C -0.159 4.159 6 C -0.074 4.074 7 C -0.150 4.150 8 C -0.077 4.077 9 C -0.156 4.156 10 C 0.349 3.651 11 O -0.455 6.455 12 N -0.329 5.329 13 C -0.015 4.015 14 C -0.163 4.163 15 C -0.144 4.144 16 C -0.124 4.124 17 H 0.075 0.925 18 C 0.036 3.964 19 N -0.404 5.404 20 C -0.363 4.363 21 H 0.075 0.925 22 C -0.251 4.251 23 N -0.633 5.633 24 Si 0.766 3.234 25 H -0.164 1.164 26 H -0.234 1.234 27 H -0.195 1.195 28 C -0.022 4.022 29 C -0.044 4.044 30 H 0.135 0.865 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.256 0.744 34 H 0.185 0.815 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.197 0.803 46 H 0.066 0.934 47 H 0.105 0.895 48 H 0.116 0.884 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.642 7.181 -14.571 16.894 hybrid contribution -0.976 -0.479 0.271 1.120 sum -5.618 6.702 -14.299 16.762 Atomic orbital electron populations 1.21770 0.77738 1.04777 1.01791 1.45660 1.08929 1.08107 1.74177 1.18388 0.87280 0.84216 0.75753 1.90758 1.70588 1.32853 1.51748 1.19853 0.92897 0.94499 1.08671 1.21882 0.94976 0.97465 0.93101 1.21541 0.94316 0.99345 0.99821 1.22016 1.01863 0.91021 0.92838 1.19821 0.93730 0.93909 1.08149 1.18442 0.80719 0.87380 0.78589 1.90737 1.68554 1.39563 1.46687 1.48100 1.20321 1.18214 1.46223 1.21951 0.95241 0.85939 0.98393 1.21938 1.01354 0.98875 0.94132 1.21502 0.98011 0.93519 1.01404 1.21647 0.99724 0.96313 0.94675 0.92510 1.20796 0.92003 0.87007 0.96637 1.42829 1.10107 1.16113 1.71385 1.19018 0.98942 0.91290 1.27042 0.92461 1.25465 1.02140 0.95900 1.01574 1.69894 1.37884 1.08357 1.47212 0.85651 0.79809 0.77721 0.80179 1.16361 1.23384 1.19454 1.22394 1.01334 0.88325 0.90131 1.21160 0.92607 0.98216 0.92437 0.86460 0.93121 0.92500 0.74426 0.81450 0.81923 0.82517 0.88680 0.90171 0.93120 0.87839 0.90702 0.89632 0.93833 0.95812 0.80258 0.93433 0.89465 0.88422 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.70 127.77 1.37 2.57 16 2 N -0.72 -12.98 5.66 -487.47 -2.76 -15.74 16 3 C 0.56 15.25 7.77 86.79 0.67 15.92 16 4 O -0.58 -20.68 16.34 -3.85 -0.06 -20.74 16 5 C -0.16 -4.16 5.87 -20.12 -0.12 -4.28 16 6 C -0.06 -1.16 9.54 22.58 0.22 -0.94 16 7 C -0.13 -2.88 10.02 22.19 0.22 -2.66 16 8 C -0.06 -1.43 7.35 22.58 0.17 -1.26 16 9 C -0.15 -4.46 5.30 -20.12 -0.11 -4.56 16 10 C 0.56 17.31 7.39 86.79 0.64 17.95 16 11 O -0.57 -21.32 16.23 -3.86 -0.06 -21.38 16 12 N -0.60 -15.11 2.97 -821.47 -2.44 -17.55 16 13 C 0.11 2.16 6.47 86.51 0.56 2.72 16 14 C -0.12 -2.24 6.10 30.82 0.19 -2.05 16 15 C -0.11 -2.04 5.16 30.62 0.16 -1.89 16 16 C -0.10 -2.72 2.36 -10.72 -0.03 -2.74 16 17 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 18 C 0.16 5.38 5.65 86.38 0.49 5.87 16 19 N -0.76 -32.43 5.11 -343.44 -1.75 -34.19 16 20 C -0.23 -12.40 10.47 84.04 0.88 -11.52 16 21 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 22 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 23 N -0.98 -60.11 13.97 21.65 0.30 -59.80 16 24 Si 0.94 41.44 27.99 68.60 1.92 43.36 16 25 H -0.24 -9.03 7.11 99.48 0.71 -8.32 16 26 H -0.31 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.27 -11.30 6.17 99.48 0.61 -10.69 16 28 C 0.10 2.46 3.86 86.36 0.33 2.79 16 29 C -0.02 -0.75 9.15 22.79 0.21 -0.54 16 30 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.42 4.72 6.85 -92.71 -0.64 4.09 16 34 H 0.17 2.07 6.39 -2.91 -0.02 2.05 16 35 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.16 3.26 5.98 -2.91 -0.02 3.24 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.87 7.00 -2.39 -0.02 1.85 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 44 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.36 15.25 4.84 -92.71 -0.45 14.80 16 46 H 0.26 14.97 8.31 -92.71 -0.77 14.19 16 47 H 0.09 2.41 3.77 -2.39 -0.01 2.40 16 48 H 0.10 2.02 8.05 -2.39 -0.02 2.00 16 49 H 0.12 4.24 7.58 -2.91 -0.02 4.22 16 Total: -1.00 -79.29 391.74 1.27 -78.01 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.19 Total: 35.46 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.32 Total: 12.56 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -6.65 Total: -127.28 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.13 Total: -42.12 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.92 Total: 43.36 kcal Total: -79.29 1.27 -78.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714093123.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.111 kcal (2) G-P(sol) polarization free energy of solvation -79.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds