Wall clock time and date at job start Sat Apr 11 2020 07:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00239 * 2 1 4 4 C 1.34777 * 119.99517 * 179.97438 * 2 1 3 5 5 O 1.21537 * 120.00220 * 5.02397 * 4 2 1 6 6 C 1.47949 * 119.99835 * 185.02623 * 4 2 1 7 7 C 1.39210 * 120.19786 * 59.82962 * 6 4 2 8 8 C 1.38211 * 119.99697 * 180.02562 * 7 6 4 9 9 C 1.38375 * 120.39876 * 0.02562 * 8 7 6 10 10 C 1.38217 * 120.39274 * 0.02562 * 9 8 7 11 11 C 1.39211 * 119.99867 * 359.67454 * 10 9 8 12 12 C 1.47952 * 120.20031 * 180.29855 * 11 10 9 13 13 O 1.21533 * 119.99966 * 176.19531 * 12 11 10 14 14 N 1.34772 * 119.99909 * 356.19583 * 12 11 10 15 15 C 1.46494 * 120.00458 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47667 * 180.02562 * 15 14 12 17 17 N 1.46495 * 109.47210 * 180.02562 * 16 15 14 18 18 C 1.36947 * 119.99803 * 269.99760 * 17 16 15 19 19 H 1.08000 * 120.00037 * 135.26931 * 18 17 16 20 20 C 1.38814 * 119.99666 * 315.27155 * 18 17 16 21 21 N 1.31624 * 119.99864 * 3.05868 * 20 18 17 22 22 Si 1.86796 * 119.99734 * 183.06434 * 20 18 17 23 23 H 1.48497 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47446 * 119.99907 * 22 20 18 25 25 H 1.48506 * 109.46587 * 239.99587 * 22 20 18 26 26 C 1.46501 * 120.00494 * 89.99858 * 17 16 15 27 27 C 1.52998 * 117.49841 * 193.50039 * 26 17 16 28 28 C 1.52996 * 117.50041 * 124.87838 * 26 17 16 29 29 H 1.09003 * 109.47075 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47438 * 240.00817 * 1 2 3 31 31 H 1.08994 * 109.47438 * 120.00008 * 1 2 3 32 32 H 1.08994 * 109.47312 * 85.70144 * 3 2 1 33 33 H 1.09000 * 109.47264 * 205.70601 * 3 2 1 34 34 H 1.09007 * 109.46967 * 325.70349 * 3 2 1 35 35 H 1.08004 * 120.00590 * 359.97438 * 7 6 4 36 36 H 1.07997 * 119.80461 * 179.97438 * 8 7 6 37 37 H 1.07993 * 119.80448 * 179.97438 * 9 8 7 38 38 H 1.07998 * 119.99439 * 179.97438 * 10 9 8 39 39 H 0.97003 * 120.00017 * 0.02562 * 14 12 11 40 40 H 1.09003 * 109.46996 * 300.00719 * 15 14 12 41 41 H 1.09000 * 109.46813 * 59.99860 * 15 14 12 42 42 H 1.09003 * 109.46575 * 299.99752 * 16 15 14 43 43 H 1.08997 * 109.47002 * 59.99615 * 16 15 14 44 44 H 0.97002 * 119.99460 * 185.00810 * 21 20 18 45 45 H 1.09003 * 115.54860 * 339.19851 * 26 17 16 46 46 H 1.09000 * 117.50009 * 359.97438 * 27 26 17 47 47 H 1.09006 * 117.50055 * 145.01607 * 27 26 17 48 48 H 1.09001 * 117.49583 * 214.98182 * 28 26 17 49 49 H 1.08994 * 117.49889 * 359.97215 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5346 -2.2178 -0.0912 6 6 3.6140 -1.1698 0.1128 7 6 4.2323 -0.6119 1.2283 8 6 5.6108 -0.6160 1.3287 9 6 6.3842 -1.1719 0.3249 10 6 5.7875 -1.7292 -0.7903 11 6 4.4002 -1.7396 -0.9054 12 6 3.7565 -2.3409 -2.0941 13 8 2.5449 -2.4103 -2.1592 14 7 4.5137 -2.8117 -3.1047 15 6 3.8765 -3.4076 -4.2815 16 6 4.9529 -3.8588 -5.2709 17 7 4.3155 -4.4541 -6.4479 18 6 4.0503 -5.7973 -6.4771 19 1 3.0938 -6.1513 -6.8323 20 6 5.0108 -6.7038 -6.0499 21 7 6.1533 -6.2704 -5.5606 22 14 4.6820 -8.5387 -6.1695 23 1 3.3337 -8.7631 -6.7500 24 1 5.7070 -9.1697 -7.0391 25 1 4.7436 -9.1420 -4.8139 26 6 3.9620 -3.6127 -7.5939 27 6 3.0273 -4.2103 -8.6474 28 6 4.5117 -4.0166 -8.9633 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3634 -0.5138 -0.8899 32 1 2.3125 1.6218 1.0247 33 1 3.1811 1.1203 -0.4457 34 1 1.6439 2.0079 -0.5791 35 1 3.6349 -0.1752 2.0150 36 1 6.0872 -0.1820 2.1953 37 1 7.4606 -1.1696 0.4130 38 1 6.3974 -2.1610 -1.5700 39 1 5.4808 -2.7567 -3.0525 40 1 3.2810 -4.2679 -3.9757 41 1 3.2310 -2.6697 -4.7578 42 1 5.5486 -2.9987 -5.5767 43 1 5.5981 -4.5967 -4.7943 44 1 6.8527 -6.9018 -5.3299 45 1 3.8679 -2.5473 -7.3835 46 1 2.6758 -5.2297 -8.4882 47 1 2.3180 -3.5381 -9.1305 48 1 4.7791 -3.2170 -9.6541 49 1 5.1368 -4.9082 -9.0116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714675430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:44 Heat of formation + Delta-G solvation = 21.260628 kcal Electronic energy + Delta-G solvation = -30397.175777 eV Core-core repulsion = 26326.562405 eV Total energy + Delta-G solvation = -4070.613371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.67346 -38.92861 -38.04045 -37.04769 -35.45766 -34.66920 -33.23458 -31.67121 -31.58402 -30.54976 -28.15374 -27.58730 -26.35903 -24.65530 -23.61058 -23.19641 -21.66141 -21.28220 -20.30057 -19.88475 -19.59360 -17.90713 -17.05715 -16.36214 -16.19967 -16.00229 -15.53787 -15.35917 -15.20625 -14.82672 -14.75214 -14.58219 -14.27764 -13.82442 -13.55546 -13.24107 -13.13510 -12.91423 -12.77835 -12.59486 -12.47658 -12.38452 -12.13099 -12.04871 -11.96043 -11.65350 -11.54238 -10.96613 -10.78857 -10.68369 -10.24863 -10.07360 -9.93552 -9.85133 -9.61455 -9.45191 -9.26751 -9.23737 -9.12574 -8.68774 -8.55499 -8.39960 -6.45102 -5.85589 -3.59165 0.62334 0.93334 2.74264 2.90776 3.14260 3.31996 3.40736 3.42798 3.52565 3.81837 4.34045 4.39984 4.57053 4.64966 4.79089 4.90514 4.97182 5.07492 5.12275 5.13430 5.16781 5.26141 5.40336 5.43386 5.48017 5.51853 5.59284 5.76737 5.91383 5.98005 6.01322 6.09716 6.12430 6.18998 6.25992 6.35760 6.41416 6.51365 6.54155 6.59503 6.62820 6.92353 7.03218 7.13058 7.22431 7.29157 7.61453 7.85693 7.96790 8.27964 8.54820 8.64829 9.14407 9.69162 10.27665 11.10153 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.002783 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.940640 B =10058.186644 C =10717.316528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.625 5.625 3 C 0.082 3.918 4 C 0.562 3.438 5 O -0.488 6.488 6 C -0.073 4.073 7 C -0.100 4.100 8 C -0.104 4.104 9 C -0.109 4.109 10 C -0.089 4.089 11 C -0.087 4.087 12 C 0.535 3.465 13 O -0.511 6.511 14 N -0.712 5.712 15 C 0.102 3.898 16 C 0.126 3.874 17 N -0.549 5.549 18 C -0.258 4.258 19 H 0.065 0.935 20 C 0.023 3.977 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.287 1.287 26 C 0.125 3.875 27 C -0.203 4.203 28 C -0.217 4.217 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.395 0.605 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.026 0.974 43 H 0.126 0.874 44 H 0.258 0.742 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 17.779 13.496 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.361 5.361 3 C -0.062 4.062 4 C 0.348 3.652 5 O -0.359 6.359 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.122 4.122 9 C -0.127 4.127 10 C -0.108 4.108 11 C -0.091 4.091 12 C 0.320 3.680 13 O -0.388 6.388 14 N -0.364 5.364 15 C -0.023 4.023 16 C 0.000 4.000 17 N -0.265 5.265 18 C -0.387 4.387 19 H 0.082 0.918 20 C -0.176 4.176 21 N -0.537 5.537 22 Si 0.728 3.272 23 H -0.199 1.199 24 H -0.213 1.213 25 H -0.214 1.214 26 C 0.015 3.985 27 C -0.242 4.242 28 C -0.258 4.258 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.229 0.771 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.143 0.857 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.723 16.997 13.502 21.719 hybrid contribution 0.454 -0.871 -0.170 0.997 sum -0.268 16.125 13.332 20.924 Atomic orbital electron populations 1.21555 0.78863 1.01819 1.02536 1.47575 1.06932 1.05932 1.75660 1.21802 0.97580 0.85366 1.01420 1.18085 0.86619 0.83684 0.76804 1.90836 1.68923 1.30865 1.45301 1.19898 0.93494 0.98996 0.95285 1.21167 0.95020 0.98793 0.96871 1.21253 0.93313 0.98724 0.98943 1.21288 1.00530 0.97451 0.93453 1.21413 0.93163 0.97744 0.98464 1.20166 0.93593 0.99846 0.95457 1.18277 0.87340 0.79607 0.82788 1.90897 1.13021 1.55794 1.79040 1.45993 1.09994 1.60964 1.19440 1.22383 0.98414 0.96762 0.84775 1.21538 0.93122 0.97978 0.87381 1.43149 1.69342 1.04081 1.09949 1.19095 0.97606 0.81310 1.40721 0.91782 1.25489 0.95062 0.98616 0.98469 1.69510 1.05612 1.33470 1.45083 0.86266 0.78034 0.85302 0.77606 1.19919 1.21266 1.21361 1.21194 1.00196 0.93152 0.83916 1.23081 0.92600 1.02682 1.05820 1.23272 0.96269 1.03281 1.02969 0.90945 0.92377 0.91822 0.92753 0.91027 0.91229 0.85146 0.85067 0.84893 0.84578 0.77075 0.91631 0.93512 0.95561 0.85655 0.93152 0.89322 0.88658 0.90848 0.91200 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 10.17 59.85 0.61 1.63 16 2 N -0.62 -7.78 3.27 -190.61 -0.62 -8.40 16 3 C 0.08 0.67 9.50 59.84 0.57 1.24 16 4 C 0.56 9.15 5.73 -12.28 -0.07 9.08 16 5 O -0.49 -10.31 14.80 -18.67 -0.28 -10.59 16 6 C -0.07 -1.01 4.30 -104.63 -0.45 -1.45 16 7 C -0.10 -0.97 8.46 -39.23 -0.33 -1.30 16 8 C -0.10 -0.82 10.03 -39.54 -0.40 -1.21 16 9 C -0.11 -0.92 10.03 -39.54 -0.40 -1.32 16 10 C -0.09 -0.99 9.53 -39.23 -0.37 -1.36 16 11 C -0.09 -1.28 5.90 -104.63 -0.62 -1.90 16 12 C 0.54 10.05 7.74 -12.28 -0.10 9.95 16 13 O -0.51 -11.73 12.94 -18.67 -0.24 -11.97 16 14 N -0.71 -12.67 5.51 -61.22 -0.34 -13.01 16 15 C 0.10 2.16 6.00 -4.05 -0.02 2.13 16 16 C 0.13 2.83 5.46 -4.04 -0.02 2.81 16 17 N -0.55 -13.40 2.79 -165.66 -0.46 -13.86 16 18 C -0.26 -6.87 8.44 -15.05 -0.13 -7.00 16 19 H 0.06 1.74 6.62 -52.49 -0.35 1.39 16 20 C 0.02 0.62 5.39 -17.43 -0.09 0.53 16 21 N -0.89 -24.31 10.71 55.49 0.59 -23.71 16 22 Si 0.90 21.36 29.56 -169.99 -5.02 16.34 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.12 2.68 6.60 -67.93 -0.45 2.23 16 27 C -0.20 -4.05 9.86 -26.73 -0.26 -4.31 16 28 C -0.22 -4.40 10.18 -26.74 -0.27 -4.67 16 29 H 0.07 0.52 7.85 -51.93 -0.41 0.11 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.62 6.58 -51.93 -0.34 0.28 16 34 H 0.07 0.46 8.01 -51.93 -0.42 0.04 16 35 H 0.13 0.99 8.05 -52.48 -0.42 0.57 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.14 1.30 6.42 -52.49 -0.34 0.96 16 39 H 0.39 5.84 6.53 -40.82 -0.27 5.57 16 40 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 43 H 0.13 3.14 5.11 -51.93 -0.27 2.87 16 44 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 45 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 46 H 0.10 2.06 6.49 -51.93 -0.34 1.73 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -35.05 401.65 -10.47 -45.52 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.35 Total: 8.57 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -2.81 Total: 5.07 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.83 Total: -58.99 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.52 Total: -22.56 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.05 -10.47 -45.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714675430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.777 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds