Wall clock time and date at job start Sat Apr 11 2020 07:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00239 * 2 1 4 4 C 1.34777 * 119.99517 * 179.97438 * 2 1 3 5 5 O 1.21537 * 120.00220 * 5.02397 * 4 2 1 6 6 C 1.47949 * 119.99835 * 185.02623 * 4 2 1 7 7 C 1.39210 * 120.19786 * 59.82962 * 6 4 2 8 8 C 1.38211 * 119.99697 * 180.02562 * 7 6 4 9 9 C 1.38375 * 120.39876 * 0.02562 * 8 7 6 10 10 C 1.38217 * 120.39274 * 0.02562 * 9 8 7 11 11 C 1.39211 * 119.99867 * 359.67454 * 10 9 8 12 12 C 1.47952 * 120.20031 * 180.29855 * 11 10 9 13 13 O 1.21533 * 119.99966 * 176.19531 * 12 11 10 14 14 N 1.34772 * 119.99909 * 356.19583 * 12 11 10 15 15 C 1.46494 * 120.00458 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47667 * 180.02562 * 15 14 12 17 17 N 1.46495 * 109.47210 * 180.02562 * 16 15 14 18 18 C 1.36947 * 119.99803 * 269.99760 * 17 16 15 19 19 H 1.08000 * 120.00037 * 135.26931 * 18 17 16 20 20 C 1.38814 * 119.99666 * 315.27155 * 18 17 16 21 21 N 1.31624 * 119.99864 * 3.05868 * 20 18 17 22 22 Si 1.86796 * 119.99734 * 183.06434 * 20 18 17 23 23 H 1.48497 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47446 * 119.99907 * 22 20 18 25 25 H 1.48506 * 109.46587 * 239.99587 * 22 20 18 26 26 C 1.46501 * 120.00494 * 89.99858 * 17 16 15 27 27 C 1.52998 * 117.49841 * 193.50039 * 26 17 16 28 28 C 1.52996 * 117.50041 * 124.87838 * 26 17 16 29 29 H 1.09003 * 109.47075 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47438 * 240.00817 * 1 2 3 31 31 H 1.08994 * 109.47438 * 120.00008 * 1 2 3 32 32 H 1.08994 * 109.47312 * 85.70144 * 3 2 1 33 33 H 1.09000 * 109.47264 * 205.70601 * 3 2 1 34 34 H 1.09007 * 109.46967 * 325.70349 * 3 2 1 35 35 H 1.08004 * 120.00590 * 359.97438 * 7 6 4 36 36 H 1.07997 * 119.80461 * 179.97438 * 8 7 6 37 37 H 1.07993 * 119.80448 * 179.97438 * 9 8 7 38 38 H 1.07998 * 119.99439 * 179.97438 * 10 9 8 39 39 H 0.97003 * 120.00017 * 0.02562 * 14 12 11 40 40 H 1.09003 * 109.46996 * 300.00719 * 15 14 12 41 41 H 1.09000 * 109.46813 * 59.99860 * 15 14 12 42 42 H 1.09003 * 109.46575 * 299.99752 * 16 15 14 43 43 H 1.08997 * 109.47002 * 59.99615 * 16 15 14 44 44 H 0.97002 * 119.99460 * 185.00810 * 21 20 18 45 45 H 1.09003 * 115.54860 * 339.19851 * 26 17 16 46 46 H 1.09000 * 117.50009 * 359.97438 * 27 26 17 47 47 H 1.09006 * 117.50055 * 145.01607 * 27 26 17 48 48 H 1.09001 * 117.49583 * 214.98182 * 28 26 17 49 49 H 1.08994 * 117.49889 * 359.97215 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5346 -2.2178 -0.0912 6 6 3.6140 -1.1698 0.1128 7 6 4.2323 -0.6119 1.2283 8 6 5.6108 -0.6160 1.3287 9 6 6.3842 -1.1719 0.3249 10 6 5.7875 -1.7292 -0.7903 11 6 4.4002 -1.7396 -0.9054 12 6 3.7565 -2.3409 -2.0941 13 8 2.5449 -2.4103 -2.1592 14 7 4.5137 -2.8117 -3.1047 15 6 3.8765 -3.4076 -4.2815 16 6 4.9529 -3.8588 -5.2709 17 7 4.3155 -4.4541 -6.4479 18 6 4.0503 -5.7973 -6.4771 19 1 3.0938 -6.1513 -6.8323 20 6 5.0108 -6.7038 -6.0499 21 7 6.1533 -6.2704 -5.5606 22 14 4.6820 -8.5387 -6.1695 23 1 3.3337 -8.7631 -6.7500 24 1 5.7070 -9.1697 -7.0391 25 1 4.7436 -9.1420 -4.8139 26 6 3.9620 -3.6127 -7.5939 27 6 3.0273 -4.2103 -8.6474 28 6 4.5117 -4.0166 -8.9633 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3634 -0.5138 -0.8899 32 1 2.3125 1.6218 1.0247 33 1 3.1811 1.1203 -0.4457 34 1 1.6439 2.0079 -0.5791 35 1 3.6349 -0.1752 2.0150 36 1 6.0872 -0.1820 2.1953 37 1 7.4606 -1.1696 0.4130 38 1 6.3974 -2.1610 -1.5700 39 1 5.4808 -2.7567 -3.0525 40 1 3.2810 -4.2679 -3.9757 41 1 3.2310 -2.6697 -4.7578 42 1 5.5486 -2.9987 -5.5767 43 1 5.5981 -4.5967 -4.7943 44 1 6.8527 -6.9018 -5.3299 45 1 3.8679 -2.5473 -7.3835 46 1 2.6758 -5.2297 -8.4882 47 1 2.3180 -3.5381 -9.1305 48 1 4.7791 -3.2170 -9.6541 49 1 5.1368 -4.9082 -9.0116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714675430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:43 Heat of formation + Delta-G solvation = -0.936313 kcal Electronic energy + Delta-G solvation = -30398.138308 eV Core-core repulsion = 26326.562405 eV Total energy + Delta-G solvation = -4071.575903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77219 -40.24925 -39.09950 -38.76920 -36.55979 -36.29254 -35.03300 -33.02864 -32.45368 -32.06787 -29.32787 -28.90999 -27.31009 -26.44092 -24.82018 -24.04560 -23.29698 -22.90745 -21.70595 -21.56613 -20.69368 -19.05502 -18.28476 -17.91179 -17.45999 -17.31790 -17.11172 -16.73801 -16.34981 -16.27924 -16.01393 -15.67274 -15.63068 -15.40359 -14.58491 -14.53115 -14.41339 -14.34170 -13.98366 -13.82412 -13.60275 -13.50821 -13.45720 -13.30667 -12.95550 -12.87002 -12.82236 -12.68885 -12.53183 -12.36865 -12.02612 -11.96056 -11.77924 -11.37122 -11.14237 -10.95471 -10.78816 -10.56272 -10.21332 -9.99521 -9.91173 -9.67035 -8.39716 -7.86493 -5.64410 -0.31540 0.15071 1.39707 1.43495 1.51835 1.66335 1.86654 2.04697 2.15181 2.44787 2.79715 3.13378 3.40118 3.46229 3.52393 3.72282 3.79972 4.09486 4.23845 4.27913 4.32062 4.34873 4.36066 4.39191 4.40450 4.44594 4.52233 4.58568 4.68730 4.72237 4.76940 4.84551 4.85750 4.89069 4.93244 5.02670 5.19747 5.21871 5.28499 5.31069 5.39451 5.43895 5.53038 5.54734 5.61458 5.82652 5.88426 6.30712 6.49506 6.57841 7.12873 7.16028 7.27593 7.76439 8.28469 9.04767 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.002783 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.940640 B =10058.186644 C =10717.316528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.623 5.623 3 C 0.075 3.925 4 C 0.550 3.450 5 O -0.558 6.558 6 C -0.094 4.094 7 C -0.093 4.093 8 C -0.081 4.081 9 C -0.099 4.099 10 C -0.090 4.090 11 C -0.120 4.120 12 C 0.529 3.471 13 O -0.564 6.564 14 N -0.704 5.704 15 C 0.126 3.874 16 C 0.136 3.864 17 N -0.567 5.567 18 C -0.267 4.267 19 H 0.051 0.949 20 C -0.019 4.019 21 N -0.911 5.911 22 Si 0.952 3.048 23 H -0.274 1.274 24 H -0.281 1.281 25 H -0.290 1.290 26 C 0.101 3.899 27 C -0.194 4.194 28 C -0.204 4.204 29 H 0.115 0.885 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.146 0.854 39 H 0.410 0.590 40 H 0.020 0.980 41 H 0.039 0.961 42 H 0.045 0.955 43 H 0.104 0.896 44 H 0.257 0.743 45 H 0.111 0.889 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.104 0.896 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 20.780 15.077 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.357 5.357 3 C -0.066 4.066 4 C 0.338 3.662 5 O -0.435 6.435 6 C -0.098 4.098 7 C -0.111 4.111 8 C -0.099 4.099 9 C -0.116 4.116 10 C -0.108 4.108 11 C -0.124 4.124 12 C 0.316 3.684 13 O -0.443 6.443 14 N -0.357 5.357 15 C -0.001 4.001 16 C 0.009 3.991 17 N -0.285 5.285 18 C -0.397 4.397 19 H 0.068 0.932 20 C -0.216 4.216 21 N -0.555 5.555 22 Si 0.780 3.220 23 H -0.199 1.199 24 H -0.207 1.207 25 H -0.217 1.217 26 C -0.007 4.007 27 C -0.232 4.232 28 C -0.245 4.245 29 H 0.134 0.866 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.172 0.828 36 H 0.195 0.805 37 H 0.189 0.811 38 H 0.163 0.837 39 H 0.248 0.752 40 H 0.039 0.961 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.121 0.879 44 H 0.067 0.933 45 H 0.129 0.871 46 H 0.090 0.910 47 H 0.125 0.875 48 H 0.122 0.878 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.486 20.070 15.077 25.146 hybrid contribution -0.211 -1.676 -0.591 1.790 sum 1.275 18.394 14.486 23.448 Atomic orbital electron populations 1.21659 0.78455 1.04034 1.00918 1.47789 1.07641 1.06537 1.73767 1.22098 0.97126 0.83558 1.03845 1.18719 0.87982 0.83731 0.75788 1.90780 1.70500 1.33406 1.48853 1.19919 0.92053 1.00899 0.96927 1.21470 0.96345 0.97727 0.95573 1.21801 0.92208 0.96296 0.99606 1.21755 1.02504 0.95427 0.91933 1.21602 0.91421 0.97777 1.00018 1.19901 0.95233 1.02750 0.94537 1.19067 0.86897 0.78673 0.83739 1.90871 1.15377 1.57883 1.80177 1.45795 1.10739 1.60606 1.18534 1.21851 0.97620 0.94920 0.85697 1.21349 0.92921 0.97731 0.87051 1.43335 1.69739 1.03893 1.11509 1.19146 0.97211 0.82827 1.40564 0.93182 1.26032 0.95208 1.01713 0.98690 1.69640 1.05998 1.34182 1.45635 0.85448 0.77850 0.81498 0.77193 1.19890 1.20703 1.21712 1.21487 1.01672 0.93940 0.83575 1.23078 0.93163 1.02009 1.04966 1.23194 0.95879 1.02888 1.02533 0.86619 0.92541 0.95061 0.89441 0.91536 0.89352 0.82752 0.80514 0.81085 0.83674 0.75228 0.96098 0.94270 0.93665 0.87873 0.93289 0.87117 0.91013 0.87505 0.87762 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.04 10.17 127.77 1.30 3.34 16 2 N -0.62 -15.59 3.27 -875.25 -2.87 -18.45 16 3 C 0.08 1.07 9.50 127.77 1.21 2.28 16 4 C 0.55 18.79 5.73 86.82 0.50 19.29 16 5 O -0.56 -25.75 14.80 19.12 0.28 -25.47 16 6 C -0.09 -2.58 4.30 -19.87 -0.09 -2.67 16 7 C -0.09 -1.51 8.46 22.50 0.19 -1.32 16 8 C -0.08 -0.84 10.03 22.30 0.22 -0.62 16 9 C -0.10 -1.21 10.03 22.30 0.22 -0.98 16 10 C -0.09 -1.81 9.53 22.50 0.21 -1.60 16 11 C -0.12 -3.59 5.90 -19.87 -0.12 -3.71 16 12 C 0.53 21.14 7.74 86.82 0.67 21.81 16 13 O -0.56 -28.16 12.94 19.13 0.25 -27.92 16 14 N -0.70 -26.37 5.51 -465.89 -2.57 -28.93 16 15 C 0.13 5.66 6.00 86.38 0.52 6.18 16 16 C 0.14 6.29 5.46 86.38 0.47 6.76 16 17 N -0.57 -28.47 2.79 -678.04 -1.89 -30.37 16 18 C -0.27 -14.78 8.44 84.03 0.71 -14.07 16 19 H 0.05 2.86 6.62 -2.91 -0.02 2.84 16 20 C -0.02 -1.04 5.39 84.86 0.46 -0.58 16 21 N -0.91 -50.69 10.71 21.65 0.23 -50.46 16 22 Si 0.95 45.10 29.56 68.60 2.03 47.13 16 23 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 C 0.10 4.32 6.60 44.99 0.30 4.62 16 27 C -0.19 -7.59 9.86 30.59 0.30 -7.29 16 28 C -0.20 -8.08 10.18 30.59 0.31 -7.77 16 29 H 0.12 1.48 7.85 -2.39 -0.02 1.46 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.04 6.58 -2.39 -0.02 1.02 16 34 H 0.09 0.93 8.01 -2.38 -0.02 0.91 16 35 H 0.15 1.72 8.05 -2.91 -0.02 1.69 16 36 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 37 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.15 2.54 6.42 -2.91 -0.02 2.52 16 39 H 0.41 12.44 6.53 -92.71 -0.61 11.84 16 40 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 43 H 0.10 5.35 5.11 -2.39 -0.01 5.34 16 44 H 0.26 13.76 8.32 -92.71 -0.77 12.99 16 45 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 46 H 0.07 3.16 6.49 -2.39 -0.02 3.15 16 47 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 48 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 49 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -85.34 401.65 3.22 -82.12 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.36 Total: 28.69 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 7.40 Total: 23.66 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -7.09 Total: -128.21 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: 0.53 Total: -53.38 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -85.34 3.22 -82.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714675430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.181 kcal (2) G-P(sol) polarization free energy of solvation -85.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds