Wall clock time and date at job start Sat Apr 11 2020 07:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 120.00091 * 2 1 4 4 C 1.34770 * 120.00225 * 179.97438 * 2 1 3 5 5 O 1.21537 * 119.99676 * 4.79329 * 4 2 1 6 6 C 1.47953 * 120.00485 * 184.79203 * 4 2 1 7 7 C 1.39218 * 120.19094 * 306.69187 * 6 4 2 8 8 C 1.38215 * 119.99105 * 179.97438 * 7 6 4 9 9 C 1.38364 * 120.39771 * 0.02562 * 8 7 6 10 10 C 1.38216 * 120.40151 * 359.73561 * 9 8 7 11 11 C 1.39212 * 119.98932 * 0.51680 * 10 9 8 12 12 C 1.47956 * 120.19452 * 179.76963 * 11 10 9 13 13 O 1.21534 * 120.00049 * 140.47428 * 12 11 10 14 14 N 1.34776 * 119.99428 * 320.47056 * 12 11 10 15 15 C 1.47428 * 125.65270 * 4.68412 * 14 12 11 16 16 C 1.54912 * 104.82915 * 204.09153 * 15 14 12 17 17 C 1.55157 * 101.58423 * 322.99183 * 16 15 14 18 18 C 1.47030 * 125.64558 * 184.64178 * 14 12 11 19 19 H 1.09005 * 109.87592 * 59.40383 * 18 14 12 20 20 C 1.52997 * 109.88160 * 298.39759 * 18 14 12 21 21 N 1.46498 * 109.47519 * 75.83919 * 20 18 14 22 22 C 1.36930 * 120.00173 * 187.63758 * 21 20 18 23 23 H 1.07999 * 119.99889 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00226 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99945 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00240 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47259 * 269.99771 * 26 24 22 28 28 H 1.48504 * 109.47374 * 29.99914 * 26 24 22 29 29 H 1.48508 * 109.47447 * 149.99685 * 26 24 22 30 30 H 1.08996 * 109.47279 * 270.00272 * 1 2 3 31 31 H 1.09006 * 109.46829 * 29.99981 * 1 2 3 32 32 H 1.08999 * 109.47216 * 149.99849 * 1 2 3 33 33 H 1.08998 * 109.47106 * 245.26527 * 3 2 1 34 34 H 1.09006 * 109.46806 * 5.26006 * 3 2 1 35 35 H 1.09000 * 109.47263 * 125.26508 * 3 2 1 36 36 H 1.08003 * 120.00454 * 359.95514 * 7 6 4 37 37 H 1.07998 * 119.80211 * 179.97438 * 8 7 6 38 38 H 1.08004 * 119.79893 * 180.02562 * 9 8 7 39 39 H 1.07996 * 120.00006 * 180.28748 * 10 9 8 40 40 H 1.09003 * 110.36414 * 322.93204 * 15 14 12 41 41 H 1.09000 * 110.36209 * 85.25396 * 15 14 12 42 42 H 1.09001 * 110.99952 * 81.07099 * 16 15 14 43 43 H 1.08997 * 111.00049 * 204.91066 * 16 15 14 44 44 H 1.09000 * 110.71399 * 277.13538 * 17 16 15 45 45 H 1.08998 * 110.71771 * 153.86986 * 17 16 15 46 46 H 1.09005 * 109.46999 * 315.83733 * 20 18 14 47 47 H 1.09002 * 109.46622 * 195.84152 * 20 18 14 48 48 H 0.97005 * 119.99690 * 7.63209 * 21 20 18 49 49 H 0.97000 * 119.99902 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5344 -2.2178 -0.0870 6 6 3.6145 -1.1694 0.1076 7 6 4.3815 -0.4122 -0.7736 8 6 5.7598 -0.4169 -0.6696 9 6 6.3856 -1.1715 0.3068 10 6 5.6398 -1.9254 1.1933 11 6 4.2509 -1.9369 1.1001 12 6 3.4484 -2.7463 2.0435 13 8 2.4054 -2.3068 2.4863 14 7 3.8740 -3.9709 2.4115 15 6 5.1594 -4.5843 2.0307 16 6 4.9194 -6.1105 2.1440 17 6 3.9963 -6.1892 3.3886 18 6 3.1337 -4.9161 3.2603 19 1 2.1771 -5.1588 2.7976 20 6 2.9022 -4.3028 4.6427 21 7 1.8340 -3.3036 4.5610 22 6 1.5559 -2.5088 5.6408 23 1 2.1238 -2.6189 6.5528 24 6 0.5434 -1.5624 5.5636 25 7 -0.1491 -1.4286 4.4523 26 14 0.1635 -0.4787 7.0369 27 1 -0.8587 -1.1398 7.8873 28 1 1.4025 -0.2657 7.8274 29 1 -0.3552 0.8312 6.5673 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 2.7516 1.3684 -0.9334 34 1 1.4929 2.0951 0.0942 35 1 2.8930 1.2868 0.8391 36 1 3.8997 0.1786 -1.5387 37 1 6.3518 0.1713 -1.3550 38 1 7.4631 -1.1678 0.3797 39 1 6.1348 -2.5084 1.9559 40 1 5.4190 -4.3160 1.0066 41 1 5.9467 -4.2721 2.7168 42 1 4.4136 -6.4933 1.2575 43 1 5.8554 -6.6413 2.3174 44 1 4.5839 -6.1661 4.3064 45 1 3.3733 -7.0827 3.3507 46 1 3.8200 -3.8262 4.9871 47 1 2.6143 -5.0861 5.3439 48 1 1.3237 -3.2050 3.7419 49 1 -0.8568 -0.7675 4.3985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723966983.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:32 Heat of formation + Delta-G solvation = 13.602037 kcal Electronic energy + Delta-G solvation = -32447.534609 eV Core-core repulsion = 28376.589136 eV Total energy + Delta-G solvation = -4070.945473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55843 -39.30152 -38.04468 -36.70884 -35.17189 -34.15608 -32.07477 -31.40903 -31.08629 -30.40470 -28.57779 -27.73820 -26.18665 -24.99831 -24.01590 -23.04486 -22.53024 -21.38317 -21.05156 -19.56083 -18.58443 -17.36704 -17.09202 -16.49475 -16.23762 -16.07494 -15.62101 -15.21344 -14.78550 -14.61998 -14.31332 -14.00220 -13.67727 -13.42331 -13.37838 -13.15088 -12.91646 -12.83069 -12.71653 -12.61611 -12.43799 -12.20010 -12.05335 -11.97936 -11.66779 -11.52716 -11.42527 -11.28073 -11.05170 -10.96195 -10.65676 -10.50653 -10.39741 -9.85854 -9.59215 -9.44420 -9.04204 -9.00013 -8.75115 -8.57939 -8.31727 -7.99305 -6.48023 -5.38211 -2.65045 0.89671 1.11110 2.97691 3.19425 3.37476 3.47204 3.57824 3.61968 3.63667 3.97634 4.55923 4.61266 4.67088 4.74255 4.82127 4.85019 5.00355 5.05421 5.21309 5.25082 5.28709 5.45042 5.45759 5.52989 5.55152 5.64375 5.69579 5.77970 5.80830 5.83667 5.87981 5.97159 5.98498 6.10757 6.13365 6.18832 6.24660 6.27579 6.34436 6.36946 6.58092 6.67931 6.73680 6.78179 6.93937 7.12631 7.61783 7.94343 8.09496 8.51014 8.73379 8.97645 9.90596 10.58170 10.97776 11.81901 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007924 B = 0.005767 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.648930 B = 4854.187755 C = 7078.384040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.611 5.611 3 C 0.081 3.919 4 C 0.569 3.431 5 O -0.515 6.515 6 C -0.076 4.076 7 C -0.101 4.101 8 C -0.112 4.112 9 C -0.110 4.110 10 C -0.100 4.100 11 C -0.065 4.065 12 C 0.545 3.455 13 O -0.430 6.430 14 N -0.612 5.612 15 C 0.098 3.902 16 C -0.133 4.133 17 C -0.123 4.123 18 C 0.133 3.867 19 H 0.074 0.926 20 C 0.147 3.853 21 N -0.717 5.717 22 C -0.233 4.233 23 H 0.059 0.941 24 C -0.010 4.010 25 N -0.911 5.911 26 Si 0.893 3.107 27 H -0.294 1.294 28 H -0.287 1.287 29 H -0.295 1.295 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.017 0.983 47 H 0.016 0.984 48 H 0.400 0.600 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.344 -0.368 -14.343 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.345 5.345 3 C -0.063 4.063 4 C 0.356 3.644 5 O -0.390 6.390 6 C -0.080 4.080 7 C -0.120 4.120 8 C -0.130 4.130 9 C -0.128 4.128 10 C -0.119 4.119 11 C -0.069 4.069 12 C 0.330 3.670 13 O -0.298 6.298 14 N -0.350 5.350 15 C -0.025 4.025 16 C -0.171 4.171 17 C -0.162 4.162 18 C 0.030 3.970 19 H 0.092 0.908 20 C 0.017 3.983 21 N -0.367 5.367 22 C -0.365 4.365 23 H 0.077 0.923 24 C -0.207 4.207 25 N -0.559 5.559 26 Si 0.726 3.274 27 H -0.221 1.221 28 H -0.213 1.213 29 H -0.222 1.222 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.035 0.965 47 H 0.033 0.967 48 H 0.241 0.759 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.307 -0.478 -14.035 20.048 hybrid contribution -0.156 0.923 0.744 1.196 sum 14.151 0.445 -13.291 19.420 Atomic orbital electron populations 1.21664 0.78397 1.02008 1.03187 1.47386 1.07247 1.05685 1.74204 1.21877 0.97467 0.85598 1.01326 1.18008 0.86478 0.83742 0.76196 1.90793 1.69229 1.30813 1.48125 1.19898 0.93753 0.97687 0.96685 1.21276 0.93994 0.97963 0.98731 1.21179 0.94125 0.99121 0.98564 1.21225 1.00101 0.96461 0.95055 1.21486 0.92342 0.98989 0.99066 1.20094 0.93759 0.97363 0.95698 1.17857 0.86493 0.80624 0.81992 1.91060 1.20944 1.67685 1.50061 1.48229 1.19207 1.15700 1.51850 1.22400 0.87049 0.93136 0.99945 1.22769 1.00164 0.95257 0.98900 1.22625 0.98067 0.97200 0.98295 1.21871 0.95036 0.87699 0.92440 0.90828 1.20963 0.92912 0.92407 0.91988 1.42787 1.38117 1.39716 1.16116 1.19107 1.13049 1.12065 0.92262 0.92301 1.24652 0.99600 0.99908 0.96516 1.69778 1.24240 1.37111 1.24806 0.86394 0.77736 0.80524 0.82764 1.22150 1.21274 1.22163 0.91306 0.91953 0.90731 0.92530 0.90566 0.91831 0.84976 0.85305 0.85292 0.84711 0.90961 0.91881 0.90735 0.90224 0.90433 0.90222 0.96516 0.96678 0.75913 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.43 59.85 0.62 2.10 16 2 N -0.61 -10.42 3.27 -190.60 -0.62 -11.04 16 3 C 0.08 1.00 9.18 59.85 0.55 1.55 16 4 C 0.57 11.22 5.81 -12.28 -0.07 11.15 16 5 O -0.51 -12.21 15.32 -10.95 -0.17 -12.38 16 6 C -0.08 -1.27 4.97 -104.63 -0.52 -1.79 16 7 C -0.10 -1.20 8.24 -39.23 -0.32 -1.53 16 8 C -0.11 -1.07 10.03 -39.54 -0.40 -1.46 16 9 C -0.11 -1.09 10.03 -39.54 -0.40 -1.49 16 10 C -0.10 -1.30 7.93 -39.23 -0.31 -1.61 16 11 C -0.07 -1.13 5.47 -104.63 -0.57 -1.70 16 12 C 0.55 11.69 6.58 -12.28 -0.08 11.61 16 13 O -0.43 -11.58 11.25 -10.95 -0.12 -11.70 16 14 N -0.61 -11.12 3.07 -164.07 -0.50 -11.63 16 15 C 0.10 1.24 5.20 -2.53 -0.01 1.23 16 16 C -0.13 -1.42 7.08 -24.58 -0.17 -1.60 16 17 C -0.12 -1.60 6.44 -24.90 -0.16 -1.76 16 18 C 0.13 2.48 3.08 -66.95 -0.21 2.28 16 19 H 0.07 1.56 8.10 -51.93 -0.42 1.14 16 20 C 0.15 3.33 5.61 -4.04 -0.02 3.31 16 21 N -0.72 -20.60 4.07 -59.91 -0.24 -20.85 16 22 C -0.23 -7.21 9.99 -15.06 -0.15 -7.36 16 23 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.91 -29.99 13.06 55.49 0.72 -29.26 16 26 Si 0.89 24.17 29.55 -169.99 -5.02 19.14 16 27 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 28 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 29 H -0.29 -7.99 7.11 56.52 0.40 -7.58 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.06 0.76 7.97 -51.93 -0.41 0.34 16 32 H 0.07 1.29 7.36 -51.93 -0.38 0.91 16 33 H 0.06 0.53 5.94 -51.93 -0.31 0.22 16 34 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 35 H 0.06 0.87 7.77 -51.93 -0.40 0.47 16 36 H 0.13 1.26 6.25 -52.48 -0.33 0.93 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.14 1.55 5.78 -52.49 -0.30 1.25 16 40 H 0.07 0.84 6.71 -51.93 -0.35 0.49 16 41 H 0.06 0.70 7.30 -51.93 -0.38 0.32 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.94 7.85 -51.93 -0.41 0.54 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 48 H 0.40 12.50 5.17 -40.82 -0.21 12.29 16 49 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -41.02 387.57 -9.68 -50.70 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.24 Total: 8.68 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: -2.32 Total: 12.50 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -0.65 Total: -72.78 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.29 Total: -24.08 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.02 Total: 19.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -41.02 -9.68 -50.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723966983.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.302 kcal (2) G-P(sol) polarization free energy of solvation -41.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds