Wall clock time and date at job start Sat Apr 11 2020 07:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34777 * 120.00649 * 2 1 4 4 O 1.21282 * 120.00221 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99629 * 359.97438 * 3 2 1 6 6 N 1.46497 * 109.47038 * 180.02562 * 5 3 2 7 7 C 1.34781 * 120.00053 * 180.02562 * 6 5 3 8 8 O 1.21551 * 119.99874 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.00041 * 180.02562 * 7 6 5 10 10 C 1.39575 * 120.14457 * 180.02562 * 9 7 6 11 11 C 1.37955 * 119.85587 * 179.97438 * 10 9 7 12 12 C 1.38360 * 120.14020 * 359.97438 * 11 10 9 13 13 C 1.38354 * 120.30025 * 0.04561 * 12 11 10 14 14 C 1.37962 * 120.14132 * 359.95635 * 13 12 11 15 15 C 1.46503 * 119.99617 * 179.97438 * 2 1 3 16 16 C 1.53044 * 109.46007 * 60.07016 * 15 2 1 17 17 C 1.53187 * 109.31122 * 178.61217 * 16 15 2 18 18 N 1.46928 * 108.77838 * 54.63545 * 17 16 15 19 19 C 1.36940 * 120.62938 * 126.40833 * 18 17 16 20 20 H 1.07995 * 120.00164 * 331.82373 * 19 18 17 21 21 C 1.38811 * 119.99647 * 151.82585 * 19 18 17 22 22 N 1.31623 * 119.99962 * 343.07854 * 21 19 18 23 23 Si 1.86797 * 119.99929 * 163.07913 * 21 19 18 24 24 H 1.48502 * 109.47328 * 59.99965 * 23 21 19 25 25 H 1.48503 * 109.47304 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47230 * 299.99820 * 23 21 19 27 27 C 1.46920 * 118.73914 * 306.39089 * 18 17 16 28 28 C 1.53042 * 109.46382 * 300.00117 * 15 2 1 29 29 H 1.09003 * 109.47413 * 90.00168 * 1 2 3 30 30 H 1.08994 * 109.47566 * 210.00671 * 1 2 3 31 31 H 1.09008 * 109.46934 * 330.00327 * 1 2 3 32 32 H 1.09001 * 109.46757 * 60.00645 * 5 3 2 33 33 H 1.08999 * 109.47435 * 300.00387 * 5 3 2 34 34 H 0.97000 * 119.99893 * 0.02562 * 6 5 3 35 35 H 1.08005 * 120.07454 * 359.70127 * 10 9 7 36 36 H 1.07997 * 119.93433 * 179.97438 * 11 10 9 37 37 H 1.08008 * 119.84890 * 180.02562 * 12 11 10 38 38 H 1.07997 * 119.93486 * 179.97438 * 13 12 11 39 39 H 1.07999 * 120.07801 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.45903 * 180.02562 * 15 2 1 41 41 H 1.08994 * 109.49531 * 298.56680 * 16 15 2 42 42 H 1.09001 * 109.49326 * 58.66195 * 16 15 2 43 43 H 1.09002 * 109.58885 * 294.84459 * 17 16 15 44 44 H 1.09005 * 109.70502 * 174.48950 * 17 16 15 45 45 H 0.97005 * 119.99428 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58770 * 293.81935 * 27 18 17 47 47 H 1.09000 * 109.70715 * 173.46516 * 27 18 17 48 48 H 1.09002 * 109.49566 * 301.33842 * 28 15 2 49 49 H 1.08993 * 109.49646 * 61.39814 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1670 -0.0005 5 6 1.3855 2.4723 -0.0006 6 7 2.3376 3.5857 -0.0011 7 6 1.8884 4.8565 -0.0011 8 8 0.6933 5.0786 -0.0003 9 6 2.8492 5.9801 -0.0022 10 6 2.3873 7.2972 -0.0017 11 6 3.2891 8.3412 -0.0022 12 6 4.6488 8.0848 -0.0026 13 6 5.1133 6.7816 -0.0035 14 6 4.2221 5.7284 -0.0031 15 6 2.1974 -1.2688 0.0006 16 6 1.8287 -2.0709 -1.2496 17 6 2.6223 -3.3811 -1.2632 18 7 2.3847 -4.0911 0.0010 19 6 1.9516 -5.3902 0.0009 20 1 1.3624 -5.7629 -0.8239 21 6 2.2698 -6.2279 1.0610 22 7 3.2409 -5.9030 1.8880 23 14 1.3200 -7.8164 1.3138 24 1 1.4723 -8.6803 0.1156 25 1 1.8496 -8.5254 2.5063 26 1 -0.1174 -7.5061 1.5208 27 6 2.6210 -3.3809 1.2653 28 6 1.8274 -2.0706 1.2506 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8898 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 0.7586 2.5302 0.8892 33 1 0.7591 2.5299 -0.8908 34 1 3.2912 3.4084 -0.0014 35 1 1.3262 7.4987 -0.0054 36 1 2.9332 9.3608 -0.0022 37 1 5.3507 8.9057 -0.0026 38 1 6.1758 6.5882 -0.0043 39 1 4.5859 4.7115 -0.0034 40 1 3.2690 -1.0695 0.0009 41 1 0.7615 -2.2920 -1.2384 42 1 2.0710 -1.4895 -2.1393 43 1 3.6854 -3.1634 -1.3658 44 1 2.2941 -4.0010 -2.0976 45 1 3.4635 -6.4887 2.6285 46 1 3.6840 -3.1631 1.3689 47 1 2.2914 -3.9983 2.1009 48 1 2.0687 -1.4891 2.1404 49 1 0.7601 -2.2912 1.2386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731351714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:03 Heat of formation + Delta-G solvation = -16.573514 kcal Electronic energy + Delta-G solvation = -29617.378936 eV Core-core repulsion = 25545.124953 eV Total energy + Delta-G solvation = -4072.253983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.71695 -39.94197 -38.52333 -37.53351 -35.27650 -34.76730 -32.61459 -31.75450 -31.31974 -30.37247 -29.75354 -27.97053 -26.96773 -25.02370 -23.93301 -22.86495 -22.25492 -22.00757 -20.76284 -19.75470 -18.95205 -18.45541 -17.09193 -16.93033 -16.47482 -16.20541 -16.10781 -15.71718 -15.11627 -14.99045 -14.79645 -14.72369 -14.05669 -13.90063 -13.67973 -13.65600 -13.56098 -13.17941 -13.05477 -12.96550 -12.70319 -12.48334 -12.43277 -12.21517 -12.07324 -11.53354 -11.49416 -11.16557 -10.87512 -10.74881 -10.40499 -10.32619 -10.26671 -10.14839 -9.94298 -9.76379 -9.57783 -9.55586 -9.40172 -9.28539 -8.61286 -8.40390 -6.72713 -5.82674 -3.25604 0.46765 0.96270 2.46446 2.56150 2.57513 3.18741 3.36103 3.42125 3.42786 3.51107 4.25700 4.35663 4.44892 4.46307 4.53801 4.73284 4.96095 4.97353 5.06602 5.09532 5.14693 5.24925 5.34347 5.37828 5.40117 5.44736 5.57367 5.58750 5.67057 5.79977 5.89988 5.96650 5.98871 6.02610 6.03551 6.13715 6.26430 6.42242 6.46486 6.48989 6.56783 6.72001 6.78745 6.90674 7.18535 7.28093 7.38127 7.60673 7.75782 7.87100 8.04660 8.40989 9.17016 9.80080 10.36874 11.26083 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.001836 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.541838 B =15250.797593 C =15673.704230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.600 5.600 3 C 0.506 3.494 4 O -0.543 6.543 5 C 0.101 3.899 6 N -0.713 5.713 7 C 0.561 3.439 8 O -0.540 6.540 9 C -0.134 4.134 10 C -0.060 4.060 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.127 4.127 14 C -0.084 4.084 15 C 0.144 3.856 16 C -0.137 4.137 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.255 4.255 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.174 3.826 28 C -0.146 4.146 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.412 0.588 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.255 0.745 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.339 25.727 -3.593 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.332 5.332 3 C 0.292 3.708 4 O -0.421 6.421 5 C -0.026 4.026 6 N -0.368 5.368 7 C 0.349 3.651 8 O -0.418 6.418 9 C -0.137 4.137 10 C -0.079 4.079 11 C -0.148 4.148 12 C -0.113 4.113 13 C -0.145 4.145 14 C -0.103 4.103 15 C 0.043 3.957 16 C -0.177 4.177 17 C 0.020 3.980 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.251 0.749 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.070 0.930 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.492 25.705 -3.450 25.979 hybrid contribution -0.108 -0.984 0.203 1.011 sum -1.600 24.721 -3.247 24.985 Atomic orbital electron populations 1.21872 0.79599 1.03671 1.02188 1.48108 1.07238 1.06198 1.71657 1.20409 0.88093 0.85501 0.76757 1.90680 1.13690 1.86960 1.50790 1.21155 0.92215 0.84420 1.04782 1.45653 1.11426 1.04609 1.75127 1.18258 0.88207 0.82476 0.76194 1.90774 1.16132 1.84837 1.50032 1.19890 0.93312 0.93792 1.06739 1.21297 1.00826 0.90879 0.94855 1.21179 0.93191 0.99284 1.01156 1.21417 0.95826 0.97020 0.97026 1.21158 1.00090 0.92489 1.00759 1.21440 0.92130 0.99943 0.96744 1.21269 0.97266 0.80597 0.96581 1.22363 1.01508 0.98032 0.95840 1.20866 0.95794 0.90901 0.90393 1.44075 1.77788 1.10200 0.99372 1.19131 1.26082 0.86560 1.06661 0.91672 1.25065 0.96874 0.97712 0.99931 1.70021 1.28118 1.38348 1.18141 0.86361 0.79725 0.83239 0.77375 1.20854 1.21630 1.21041 1.20750 0.95300 0.88607 0.90584 1.22578 1.01719 0.99024 0.95282 0.92231 0.89899 0.91224 0.88225 0.88254 0.74882 0.84579 0.85250 0.85507 0.85185 0.85241 0.88565 0.91980 0.92949 0.96231 0.92391 0.93503 0.96136 0.89100 0.93023 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 9.33 59.84 0.56 1.27 16 2 N -0.60 -8.16 2.76 -173.88 -0.48 -8.64 16 3 C 0.51 6.91 7.74 -10.98 -0.09 6.83 16 4 O -0.54 -9.07 14.99 5.56 0.08 -8.98 16 5 C 0.10 1.11 4.71 -5.19 -0.02 1.08 16 6 N -0.71 -7.94 5.48 -62.43 -0.34 -8.28 16 7 C 0.56 6.67 7.77 -12.33 -0.10 6.57 16 8 O -0.54 -7.80 16.35 5.32 0.09 -7.71 16 9 C -0.13 -1.34 5.87 -104.97 -0.62 -1.96 16 10 C -0.06 -0.53 9.60 -39.19 -0.38 -0.91 16 11 C -0.13 -0.89 10.03 -39.64 -0.40 -1.28 16 12 C -0.09 -0.59 10.04 -39.49 -0.40 -0.99 16 13 C -0.13 -0.87 10.03 -39.64 -0.40 -1.27 16 14 C -0.08 -0.70 9.54 -39.18 -0.37 -1.07 16 15 C 0.14 2.43 2.48 -67.88 -0.17 2.26 16 16 C -0.14 -2.30 5.34 -26.61 -0.14 -2.45 16 17 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 18 N -0.59 -14.40 2.99 -172.32 -0.52 -14.92 16 19 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 20 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 21 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 22 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 23 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 28 C -0.15 -2.68 5.31 -26.61 -0.14 -2.82 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.90 6.45 -51.93 -0.34 0.57 16 31 H 0.07 0.56 6.44 -51.92 -0.33 0.22 16 32 H 0.10 1.00 7.40 -51.93 -0.38 0.62 16 33 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.41 4.41 5.47 -40.82 -0.22 4.18 16 35 H 0.14 1.19 7.65 -52.48 -0.40 0.79 16 36 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.95 6.41 -52.49 -0.34 0.62 16 40 H 0.10 1.84 6.90 -51.93 -0.36 1.48 16 41 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -32.63 393.15 -9.78 -42.41 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.20 Total: 3.78 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -2.93 Total: 5.33 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.72 Total: -57.01 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.17 Total: -16.70 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.63 -9.78 -42.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731351714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.836 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds