Wall clock time and date at job start Sat Apr 11 2020 07:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34777 * 120.00649 * 2 1 4 4 O 1.21282 * 120.00221 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99629 * 359.97438 * 3 2 1 6 6 N 1.46497 * 109.47038 * 180.02562 * 5 3 2 7 7 C 1.34781 * 120.00053 * 180.02562 * 6 5 3 8 8 O 1.21551 * 119.99874 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.00041 * 180.02562 * 7 6 5 10 10 C 1.39575 * 120.14457 * 180.02562 * 9 7 6 11 11 C 1.37955 * 119.85587 * 179.97438 * 10 9 7 12 12 C 1.38360 * 120.14020 * 359.97438 * 11 10 9 13 13 C 1.38354 * 120.30025 * 0.04561 * 12 11 10 14 14 C 1.37962 * 120.14132 * 359.95635 * 13 12 11 15 15 C 1.46503 * 119.99617 * 179.97438 * 2 1 3 16 16 C 1.53044 * 109.46007 * 60.07016 * 15 2 1 17 17 C 1.53187 * 109.31122 * 178.61217 * 16 15 2 18 18 N 1.46928 * 108.77838 * 54.63545 * 17 16 15 19 19 C 1.36940 * 120.62938 * 126.40833 * 18 17 16 20 20 H 1.07995 * 120.00164 * 331.82373 * 19 18 17 21 21 C 1.38811 * 119.99647 * 151.82585 * 19 18 17 22 22 N 1.31623 * 119.99962 * 343.07854 * 21 19 18 23 23 Si 1.86797 * 119.99929 * 163.07913 * 21 19 18 24 24 H 1.48502 * 109.47328 * 59.99965 * 23 21 19 25 25 H 1.48503 * 109.47304 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47230 * 299.99820 * 23 21 19 27 27 C 1.46920 * 118.73914 * 306.39089 * 18 17 16 28 28 C 1.53042 * 109.46382 * 300.00117 * 15 2 1 29 29 H 1.09003 * 109.47413 * 90.00168 * 1 2 3 30 30 H 1.08994 * 109.47566 * 210.00671 * 1 2 3 31 31 H 1.09008 * 109.46934 * 330.00327 * 1 2 3 32 32 H 1.09001 * 109.46757 * 60.00645 * 5 3 2 33 33 H 1.08999 * 109.47435 * 300.00387 * 5 3 2 34 34 H 0.97000 * 119.99893 * 0.02562 * 6 5 3 35 35 H 1.08005 * 120.07454 * 359.70127 * 10 9 7 36 36 H 1.07997 * 119.93433 * 179.97438 * 11 10 9 37 37 H 1.08008 * 119.84890 * 180.02562 * 12 11 10 38 38 H 1.07997 * 119.93486 * 179.97438 * 13 12 11 39 39 H 1.07999 * 120.07801 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.45903 * 180.02562 * 15 2 1 41 41 H 1.08994 * 109.49531 * 298.56680 * 16 15 2 42 42 H 1.09001 * 109.49326 * 58.66195 * 16 15 2 43 43 H 1.09002 * 109.58885 * 294.84459 * 17 16 15 44 44 H 1.09005 * 109.70502 * 174.48950 * 17 16 15 45 45 H 0.97005 * 119.99428 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58770 * 293.81935 * 27 18 17 47 47 H 1.09000 * 109.70715 * 173.46516 * 27 18 17 48 48 H 1.09002 * 109.49566 * 301.33842 * 28 15 2 49 49 H 1.08993 * 109.49646 * 61.39814 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1670 -0.0005 5 6 1.3855 2.4723 -0.0006 6 7 2.3376 3.5857 -0.0011 7 6 1.8884 4.8565 -0.0011 8 8 0.6933 5.0786 -0.0003 9 6 2.8492 5.9801 -0.0022 10 6 2.3873 7.2972 -0.0017 11 6 3.2891 8.3412 -0.0022 12 6 4.6488 8.0848 -0.0026 13 6 5.1133 6.7816 -0.0035 14 6 4.2221 5.7284 -0.0031 15 6 2.1974 -1.2688 0.0006 16 6 1.8287 -2.0709 -1.2496 17 6 2.6223 -3.3811 -1.2632 18 7 2.3847 -4.0911 0.0010 19 6 1.9516 -5.3902 0.0009 20 1 1.3624 -5.7629 -0.8239 21 6 2.2698 -6.2279 1.0610 22 7 3.2409 -5.9030 1.8880 23 14 1.3200 -7.8164 1.3138 24 1 1.4723 -8.6803 0.1156 25 1 1.8496 -8.5254 2.5063 26 1 -0.1174 -7.5061 1.5208 27 6 2.6210 -3.3809 1.2653 28 6 1.8274 -2.0706 1.2506 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8898 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 0.7586 2.5302 0.8892 33 1 0.7591 2.5299 -0.8908 34 1 3.2912 3.4084 -0.0014 35 1 1.3262 7.4987 -0.0054 36 1 2.9332 9.3608 -0.0022 37 1 5.3507 8.9057 -0.0026 38 1 6.1758 6.5882 -0.0043 39 1 4.5859 4.7115 -0.0034 40 1 3.2690 -1.0695 0.0009 41 1 0.7615 -2.2920 -1.2384 42 1 2.0710 -1.4895 -2.1393 43 1 3.6854 -3.1634 -1.3658 44 1 2.2941 -4.0010 -2.0976 45 1 3.4635 -6.4887 2.6285 46 1 3.6840 -3.1631 1.3689 47 1 2.2914 -3.9983 2.1009 48 1 2.0687 -1.4891 2.1404 49 1 0.7601 -2.2912 1.2386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731351714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:02 Heat of formation + Delta-G solvation = -36.643493 kcal Electronic energy + Delta-G solvation = -29618.249236 eV Core-core repulsion = 25545.124953 eV Total energy + Delta-G solvation = -4073.124283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67669 -40.92072 -39.34185 -38.93476 -36.68308 -35.72037 -34.33175 -32.52482 -31.96873 -31.86640 -31.42894 -28.99989 -27.98814 -26.71911 -24.76775 -23.90310 -23.68715 -23.29023 -21.57499 -21.06328 -20.31286 -19.30094 -18.72896 -18.10338 -17.36900 -17.18782 -17.06583 -16.84737 -16.50162 -15.99325 -15.88056 -15.48469 -15.43830 -15.39143 -14.86207 -14.71473 -14.61421 -14.41676 -14.13084 -14.07332 -13.97550 -13.77161 -13.39824 -13.22060 -13.11930 -13.00506 -12.62620 -12.58558 -12.55152 -12.09224 -12.03362 -12.02282 -11.90659 -11.49038 -11.36485 -11.21150 -10.97800 -10.56223 -10.42006 -9.96404 -9.91937 -9.67699 -8.71857 -7.88208 -5.34249 -0.17180 0.40560 1.40146 1.48362 1.50212 1.57191 1.60074 1.77671 2.22361 2.51542 2.88488 3.27464 3.29276 3.62246 3.64795 3.86812 3.90506 4.01359 4.03288 4.14998 4.23685 4.26053 4.29280 4.33764 4.45365 4.46103 4.52328 4.63265 4.65284 4.71734 4.83426 4.84889 4.96208 5.01386 5.05089 5.05242 5.09126 5.13982 5.29556 5.33035 5.43697 5.44461 5.50443 5.51486 5.63504 5.68956 5.93892 6.28594 6.33434 6.38104 6.94229 7.00579 7.13376 7.83484 8.36205 9.18711 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.001836 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.541838 B =15250.797593 C =15673.704230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.598 5.598 3 C 0.506 3.494 4 O -0.578 6.578 5 C 0.109 3.891 6 N -0.712 5.712 7 C 0.561 3.439 8 O -0.571 6.571 9 C -0.158 4.158 10 C -0.074 4.074 11 C -0.130 4.130 12 C -0.089 4.089 13 C -0.131 4.131 14 C -0.092 4.092 15 C 0.155 3.845 16 C -0.121 4.121 17 C 0.143 3.857 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.071 0.929 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.969 3.031 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.276 1.276 27 C 0.181 3.819 28 C -0.129 4.129 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.414 0.586 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.133 0.867 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.008 0.992 44 H 0.063 0.937 45 H 0.250 0.750 46 H -0.010 1.010 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.417 27.740 -4.478 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.329 5.329 3 C 0.295 3.705 4 O -0.458 6.458 5 C -0.018 4.018 6 N -0.367 5.367 7 C 0.350 3.650 8 O -0.452 6.452 9 C -0.161 4.161 10 C -0.093 4.093 11 C -0.148 4.148 12 C -0.107 4.107 13 C -0.149 4.149 14 C -0.111 4.111 15 C 0.052 3.948 16 C -0.160 4.160 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.392 4.392 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.583 5.583 23 Si 0.797 3.203 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.201 1.201 27 C 0.054 3.946 28 C -0.168 4.168 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.253 0.747 35 H 0.148 0.852 36 H 0.172 0.828 37 H 0.175 0.825 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.026 0.974 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.008 0.992 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.597 27.738 -4.363 28.199 hybrid contribution 0.317 -1.541 0.441 1.634 sum -2.280 26.197 -3.922 26.587 Atomic orbital electron populations 1.22151 0.77070 1.04815 1.03809 1.48007 1.08614 1.04854 1.71449 1.20833 0.87728 0.86215 0.75759 1.90671 1.15399 1.87461 1.52274 1.21175 0.91867 0.82605 1.06165 1.45686 1.11598 1.04604 1.74789 1.18573 0.88141 0.82917 0.75358 1.90743 1.17392 1.85261 1.51829 1.19882 0.93660 0.93557 1.08974 1.21407 1.01086 0.91188 0.95654 1.21489 0.93291 0.99871 1.00099 1.21821 0.96106 0.97652 0.95133 1.21490 1.01000 0.92454 0.99938 1.21562 0.91753 1.00783 0.96961 1.20839 0.96299 0.82000 0.95694 1.22148 1.01315 0.95995 0.96586 1.21009 0.95836 0.92560 0.88924 1.44323 1.77951 1.10071 1.00789 1.19496 1.25544 0.87595 1.06614 0.91162 1.25841 0.97819 1.00995 1.00015 1.70191 1.29846 1.39528 1.18712 0.85324 0.78540 0.79503 0.76960 1.20127 1.22317 1.20145 1.20510 0.94181 0.90358 0.89507 1.22298 1.01250 0.96642 0.96656 0.90356 0.90346 0.88567 0.86841 0.86642 0.74689 0.85240 0.82823 0.82517 0.83062 0.84943 0.91209 0.90822 0.90910 0.97434 0.91883 0.94108 0.99175 0.92237 0.92367 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 9.33 127.77 1.19 2.29 16 2 N -0.60 -15.11 2.76 -822.42 -2.27 -17.38 16 3 C 0.51 13.16 7.74 87.66 0.68 13.83 16 4 O -0.58 -19.16 14.99 -3.04 -0.05 -19.20 16 5 C 0.11 2.18 4.71 85.63 0.40 2.58 16 6 N -0.71 -15.36 5.48 -469.71 -2.57 -17.94 16 7 C 0.56 13.17 7.77 86.78 0.67 13.85 16 8 O -0.57 -16.38 16.35 -3.88 -0.06 -16.44 16 9 C -0.16 -3.09 5.87 -20.09 -0.12 -3.21 16 10 C -0.07 -1.28 9.60 22.53 0.22 -1.06 16 11 C -0.13 -1.50 10.03 22.23 0.22 -1.28 16 12 C -0.09 -0.86 10.04 22.33 0.22 -0.64 16 13 C -0.13 -1.53 10.03 22.23 0.22 -1.31 16 14 C -0.09 -1.45 9.54 22.53 0.21 -1.24 16 15 C 0.15 5.09 2.48 45.02 0.11 5.20 16 16 C -0.12 -3.86 5.34 30.67 0.16 -3.69 16 17 C 0.14 5.82 6.52 86.36 0.56 6.39 16 18 N -0.61 -30.04 2.99 -699.11 -2.09 -32.13 16 19 C -0.26 -14.13 9.58 84.03 0.81 -13.33 16 20 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 21 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 22 N -0.94 -55.36 11.19 21.65 0.24 -55.11 16 23 Si 0.97 44.18 29.59 68.60 2.03 46.21 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 27 C 0.18 8.71 5.30 86.36 0.46 9.17 16 28 C -0.13 -4.70 5.31 30.67 0.16 -4.54 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.47 6.45 -2.39 -0.02 1.46 16 31 H 0.10 1.18 6.44 -2.38 -0.02 1.17 16 32 H 0.11 2.01 7.40 -2.39 -0.02 1.99 16 33 H 0.12 2.00 8.11 -2.39 -0.02 1.98 16 34 H 0.41 8.74 5.47 -92.71 -0.51 8.23 16 35 H 0.13 2.30 7.65 -2.91 -0.02 2.28 16 36 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 37 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 38 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.13 1.90 6.41 -2.91 -0.02 1.88 16 40 H 0.07 2.71 6.90 -2.38 -0.02 2.69 16 41 H 0.07 2.22 7.72 -2.39 -0.02 2.20 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.06 2.47 7.93 -2.38 -0.02 2.45 16 45 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 46 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 48 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.07 2.42 6.72 -2.39 -0.02 2.41 16 Total: -1.00 -72.95 393.15 2.30 -70.65 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.46 Total: 20.75 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 6.61 Total: 20.59 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -6.69 Total: -122.56 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.11 Total: -35.65 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -72.95 2.30 -70.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731351714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.008 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds