Wall clock time and date at job start Sat Apr 11 2020 07:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00264 * 2 1 4 4 H 1.48505 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46747 * 299.99575 * 3 2 1 6 6 H 1.48500 * 109.47567 * 59.99264 * 3 2 1 7 7 C 1.38813 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99764 * 196.49800 * 7 2 1 9 9 N 1.36939 * 120.00274 * 16.50270 * 7 2 1 10 10 C 1.47196 * 121.32710 * 208.87436 * 9 7 2 11 11 C 1.51318 * 108.04132 * 237.81063 * 10 9 7 12 12 C 1.53067 * 111.61232 * 303.00278 * 11 10 9 13 13 H 1.08994 * 112.50141 * 287.29891 * 12 11 10 14 14 C 1.55911 * 106.85512 * 162.87096 * 12 11 10 15 15 N 1.47643 * 104.42029 * 283.02893 * 14 12 11 16 16 C 1.34772 * 125.73117 * 154.98895 * 15 14 12 17 17 O 1.21282 * 120.00074 * 4.97933 * 16 15 14 18 18 C 1.50699 * 120.00030 * 184.97376 * 16 15 14 19 19 H 1.09002 * 109.68970 * 335.72798 * 18 16 15 20 20 C 1.53434 * 109.68926 * 96.26951 * 18 16 15 21 21 C 1.53106 * 109.55654 * 169.44102 * 20 18 16 22 22 C 1.53422 * 109.58292 * 289.94723 * 21 20 18 23 23 C 1.50600 * 108.33346 * 49.81977 * 22 21 20 24 24 N 1.32907 * 129.16108 * 163.42568 * 23 22 21 25 25 N 1.29021 * 108.63398 * 180.09316 * 24 23 22 26 26 N 1.29107 * 110.25972 * 0.02562 * 25 24 23 27 27 H 0.97005 * 126.00883 * 179.97438 * 26 25 24 28 28 C 1.34393 * 107.98672 * 359.91309 * 26 25 24 29 29 C 1.47454 * 108.53301 * 335.02435 * 15 14 12 30 30 C 1.53324 * 106.45385 * 0.56128 * 29 15 14 31 31 H 1.08994 * 108.05659 * 268.77410 * 30 29 15 32 32 C 1.46722 * 121.32346 * 29.15463 * 9 7 2 33 33 H 0.96999 * 119.99558 * 0.02562 * 1 2 3 34 34 H 1.09001 * 109.79443 * 357.81170 * 10 9 7 35 35 H 1.09000 * 109.79271 * 118.65507 * 10 9 7 36 36 H 1.09002 * 109.50033 * 181.95706 * 11 10 9 37 37 H 1.08997 * 108.06294 * 63.10562 * 11 10 9 38 38 H 1.09001 * 110.44546 * 41.76597 * 14 12 11 39 39 H 1.09008 * 110.44224 * 164.29634 * 14 12 11 40 40 H 1.09007 * 109.45759 * 289.46285 * 20 18 16 41 41 H 1.08998 * 109.46290 * 49.41262 * 20 18 16 42 42 H 1.09001 * 109.45468 * 49.98175 * 21 20 18 43 43 H 1.09002 * 109.45626 * 169.91632 * 21 20 18 44 44 H 1.09002 * 109.69013 * 169.53013 * 22 21 20 45 45 H 1.08997 * 109.69209 * 290.07138 * 22 21 20 46 46 H 1.09008 * 110.06032 * 241.31456 * 29 15 14 47 47 H 1.08999 * 110.05903 * 119.81221 * 29 15 14 48 48 H 1.08996 * 109.16390 * 247.81499 * 32 9 7 49 49 H 1.08997 * 109.15939 * 7.05785 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0569 -1.2214 0.2662 9 7 1.3678 -2.3638 -0.3358 10 6 1.7933 -3.6608 0.2151 11 6 2.1340 -4.5729 -0.9433 12 6 0.9524 -4.7301 -1.9035 13 1 0.1565 -5.3482 -1.4880 14 6 1.5264 -5.2969 -3.2377 15 7 2.1618 -4.1337 -3.8882 16 6 3.1662 -4.1851 -4.7853 17 8 3.5636 -5.2571 -5.1900 18 6 3.7954 -2.9104 -5.2858 19 1 3.0887 -2.0869 -5.1828 20 6 5.0636 -2.6077 -4.4769 21 6 5.8403 -1.4715 -5.1477 22 6 6.4462 -1.9709 -6.4657 23 6 5.3619 -2.6538 -7.2569 24 7 5.3365 -2.9689 -8.5478 25 7 4.2116 -3.5438 -8.8098 26 7 3.4898 -3.6214 -7.7421 27 1 2.6035 -4.0107 -7.6800 28 6 4.1829 -3.0694 -6.7317 29 6 1.5134 -2.9064 -3.3906 30 6 0.4479 -3.3557 -2.3838 31 1 -0.4897 -3.4921 -2.9225 32 6 0.2318 -2.3659 -1.2644 33 1 -0.4849 0.8401 -0.0004 34 1 2.6676 -3.5228 0.8511 35 1 0.9808 -4.1005 0.7936 36 1 2.4195 -5.5535 -0.5625 37 1 2.9768 -4.1373 -1.4799 38 1 2.2664 -6.0712 -3.0353 39 1 0.7233 -5.6901 -3.8611 40 1 4.7867 -2.3105 -3.4653 41 1 5.6889 -3.4995 -4.4347 42 1 5.1648 -0.6404 -5.3506 43 1 6.6384 -1.1367 -4.4851 44 1 6.8384 -1.1267 -7.0328 45 1 7.2493 -2.6775 -6.2563 46 1 1.0453 -2.3699 -4.2160 47 1 2.2478 -2.2688 -2.8983 48 1 -0.6743 -2.6330 -0.7206 49 1 0.1139 -1.3684 -1.6877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088084816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:42 Heat of formation + Delta-G solvation = 57.655416 kcal Electronic energy + Delta-G solvation = -32138.262730 eV Core-core repulsion = 28101.520307 eV Total energy + Delta-G solvation = -4036.742424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.59195 -41.64578 -39.87152 -37.79630 -36.87471 -34.96200 -34.34926 -32.49144 -32.35443 -31.38972 -31.17539 -28.93665 -27.30797 -26.09664 -25.00854 -24.18871 -23.72908 -23.12817 -22.79579 -20.88868 -20.49785 -20.03844 -18.97790 -18.75790 -18.22519 -17.22909 -17.11990 -16.60801 -16.47556 -15.88610 -15.74057 -15.38359 -15.26807 -14.94501 -14.94029 -14.71014 -14.56118 -14.35571 -13.89696 -13.81017 -13.45478 -13.25072 -13.16983 -12.82802 -12.77207 -12.70456 -12.51567 -12.49958 -12.41858 -12.25908 -12.04783 -11.97769 -11.93146 -11.67093 -11.59681 -11.40193 -11.03633 -10.99859 -10.90525 -10.48663 -9.99619 -9.70442 -8.58293 -7.81513 -5.26025 0.41208 1.33333 1.36932 1.50694 1.56053 1.63557 1.66581 1.88425 2.56902 3.07278 3.26011 3.36846 3.44793 3.64412 3.67371 3.73805 3.76311 3.87641 3.94533 4.05169 4.21017 4.27200 4.29771 4.38349 4.41796 4.55927 4.56801 4.67401 4.70744 4.73919 4.84772 4.89417 4.94211 4.98573 5.04529 5.07165 5.13357 5.15786 5.19389 5.20247 5.26795 5.36214 5.37956 5.41595 5.60709 5.72388 5.77201 5.80261 6.38846 6.45948 6.93757 7.22938 7.30192 7.92337 8.47940 9.25237 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.003936 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.622664 B = 7111.354129 C = 8575.376738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.040 4.040 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.301 1.301 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.603 5.603 10 C 0.140 3.860 11 C -0.115 4.115 12 C -0.080 4.080 13 H 0.109 0.891 14 C 0.111 3.889 15 N -0.602 5.602 16 C 0.531 3.469 17 O -0.575 6.575 18 C -0.025 4.025 19 H 0.126 0.874 20 C -0.102 4.102 21 C -0.111 4.111 22 C -0.034 4.034 23 C -0.018 4.018 24 N -0.287 5.287 25 N -0.111 5.111 26 N -0.364 5.364 27 H 0.456 0.544 28 C 0.009 3.991 29 C 0.114 3.886 30 C -0.108 4.108 31 H 0.083 0.917 32 C 0.191 3.809 33 H 0.248 0.752 34 H 0.050 0.950 35 H 0.016 0.984 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.070 0.930 48 H -0.001 1.001 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 -5.909 -8.472 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.235 4.235 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.229 1.229 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.326 5.326 10 C 0.015 3.985 11 C -0.154 4.154 12 C -0.099 4.099 13 H 0.127 0.873 14 C -0.011 4.011 15 N -0.334 5.334 16 C 0.319 3.681 17 O -0.456 6.456 18 C -0.048 4.048 19 H 0.144 0.856 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.073 4.073 23 C -0.159 4.159 24 N -0.153 5.153 25 N -0.090 5.090 26 N -0.083 5.083 27 H 0.303 0.697 28 C -0.128 4.128 29 C -0.008 4.008 30 C -0.128 4.128 31 H 0.102 0.898 32 C 0.065 3.935 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.017 0.983 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.564 -6.612 -10.312 13.454 hybrid contribution -0.837 0.826 1.316 1.765 sum 4.727 -5.787 -8.996 11.695 Atomic orbital electron populations 1.70161 1.06502 1.25599 1.55541 1.25640 0.95769 1.00866 1.01274 0.85423 0.79051 0.80700 0.76599 1.18871 1.21523 1.22898 1.19380 0.92395 0.85456 1.40833 0.91851 1.44200 1.36768 1.02221 1.49457 1.20720 0.97228 0.86386 0.94211 1.21544 0.97362 0.99339 0.97125 1.22297 0.97935 0.95700 0.93969 0.87273 1.22624 0.97091 0.88176 0.93181 1.48704 1.33864 1.09654 1.41182 1.20241 0.78561 0.90617 0.78645 1.90715 1.63420 1.32139 1.59300 1.20008 1.00977 0.96593 0.87251 0.85596 1.21567 0.93028 1.00481 0.99010 1.21645 1.00826 0.97002 0.95373 1.20173 0.93340 0.99910 0.93889 1.22254 0.97341 1.05272 0.90984 1.74764 1.12046 1.13020 1.15430 1.78473 1.00131 1.20122 1.10228 1.44638 1.17868 1.39630 1.06182 0.69730 1.21472 0.94993 1.03756 0.92603 1.22015 0.95769 0.86324 0.96731 1.21895 0.98115 0.96278 0.96535 0.89828 1.19842 0.88165 0.97041 0.88496 0.94248 0.93162 0.96569 0.90908 0.93380 0.90946 0.90168 0.89223 0.91337 0.90418 0.87631 0.88204 0.89008 0.90145 0.91179 0.98275 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.15 11.30 21.65 0.24 -49.91 16 2 C -0.04 -1.98 4.94 84.86 0.42 -1.57 16 3 Si 0.95 40.63 29.58 68.60 2.03 42.66 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.25 -12.16 9.65 84.03 0.81 -11.35 16 8 H 0.06 3.05 7.88 -2.91 -0.02 3.03 16 9 N -0.60 -26.01 2.88 -706.67 -2.03 -28.04 16 10 C 0.14 5.03 6.47 85.70 0.55 5.59 16 11 C -0.11 -3.24 4.91 30.07 0.15 -3.09 16 12 C -0.08 -1.99 3.69 -9.40 -0.03 -2.03 16 13 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 14 C 0.11 2.56 6.19 87.17 0.54 3.10 16 15 N -0.60 -14.81 2.89 -810.05 -2.34 -17.15 16 16 C 0.53 13.80 6.80 87.66 0.60 14.40 16 17 O -0.58 -18.65 16.75 -3.04 -0.05 -18.71 16 18 C -0.02 -0.54 2.62 -12.19 -0.03 -0.58 16 19 H 0.13 2.40 6.99 -2.39 -0.02 2.39 16 20 C -0.10 -2.02 5.21 30.78 0.16 -1.86 16 21 C -0.11 -1.72 5.90 30.77 0.18 -1.54 16 22 C -0.03 -0.61 6.30 29.96 0.19 -0.42 16 23 C -0.02 -0.45 7.11 41.75 0.30 -0.15 16 24 N -0.29 -8.66 12.40 -48.99 -0.61 -9.27 16 25 N -0.11 -3.25 13.40 37.02 0.50 -2.76 16 26 N -0.36 -8.92 6.90 -48.27 -0.33 -9.25 16 27 H 0.46 8.81 8.96 -219.67 -1.97 6.84 16 28 C 0.01 0.22 5.98 41.50 0.25 0.47 16 29 C 0.11 2.95 5.01 86.31 0.43 3.39 16 30 C -0.11 -3.08 2.70 -10.98 -0.03 -3.11 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 C 0.19 7.64 4.64 85.68 0.40 8.03 16 33 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 34 H 0.05 1.83 7.96 -2.39 -0.02 1.81 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.48 7.20 -2.39 -0.02 1.46 16 38 H 0.07 1.76 7.94 -2.39 -0.02 1.74 16 39 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 42 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 44 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.80 8.01 -2.38 -0.02 1.78 16 47 H 0.07 2.14 7.90 -2.39 -0.02 2.12 16 48 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 49 H 0.06 2.67 6.18 -2.39 -0.01 2.66 16 Total: -1.00 -65.36 380.48 1.28 -64.08 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -1.00 Total: 19.06 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 4.88 Total: 9.29 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -4.57 Total: -116.38 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.71 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -65.36 1.28 -64.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088084816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.731 kcal (2) G-P(sol) polarization free energy of solvation -65.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds