Wall clock time and date at job start Sat Apr 11 2020 07:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48500 * 109.47072 * 269.99930 * 3 2 1 5 5 H 1.48507 * 109.46727 * 29.99888 * 3 2 1 6 6 H 1.48495 * 109.47331 * 149.99509 * 3 2 1 7 7 C 1.38813 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99677 * 153.78109 * 7 2 1 9 9 N 1.36937 * 120.00181 * 333.77791 * 7 2 1 10 10 C 1.43013 * 116.49331 * 332.39119 * 9 7 2 11 11 C 1.51601 * 113.87980 * 186.56788 * 10 9 7 12 12 C 1.52894 * 111.55465 * 322.34514 * 11 10 9 13 13 H 1.09007 * 112.87630 * 293.25988 * 12 11 10 14 14 C 1.55965 * 106.48421 * 168.38686 * 12 11 10 15 15 N 1.47764 * 104.12245 * 286.22180 * 14 12 11 16 16 C 1.34768 * 125.82331 * 154.13096 * 15 14 12 17 17 O 1.21282 * 120.00069 * 354.84853 * 16 15 14 18 18 C 1.50694 * 120.00228 * 174.85456 * 16 15 14 19 19 H 1.08996 * 109.69228 * 25.14557 * 18 16 15 20 20 C 1.53435 * 109.69383 * 264.59948 * 18 16 15 21 21 C 1.53133 * 109.54268 * 190.60667 * 20 18 16 22 22 C 1.53419 * 109.60895 * 70.01735 * 21 20 18 23 23 C 1.50599 * 108.33289 * 310.19503 * 22 21 20 24 24 N 1.32916 * 129.15706 * 196.61169 * 23 22 21 25 25 N 1.29024 * 108.63433 * 179.77348 * 24 23 22 26 26 N 1.29110 * 110.25561 * 0.02562 * 25 24 23 27 27 H 0.97005 * 126.00433 * 180.02562 * 26 25 24 28 28 C 1.34391 * 107.98811 * 0.07365 * 26 25 24 29 29 C 1.47621 * 108.35756 * 334.10547 * 15 14 12 30 30 C 1.54160 * 109.50641 * 60.23378 * 12 11 10 31 31 H 1.09005 * 108.71611 * 187.74380 * 30 12 11 32 32 C 1.44000 * 116.35404 * 153.21494 * 9 7 2 33 33 H 0.97001 * 120.00679 * 0.02562 * 1 2 3 34 34 H 1.08999 * 107.23835 * 66.19738 * 10 9 7 35 35 H 1.08999 * 109.46776 * 308.53436 * 10 9 7 36 36 H 1.08999 * 109.06335 * 201.80644 * 11 10 9 37 37 H 1.08999 * 109.06917 * 82.87633 * 11 10 9 38 38 H 1.09003 * 110.50261 * 44.87665 * 14 12 11 39 39 H 1.08997 * 110.50266 * 167.42176 * 14 12 11 40 40 H 1.08998 * 109.45953 * 310.59940 * 20 18 16 41 41 H 1.09004 * 109.45713 * 70.55007 * 20 18 16 42 42 H 1.08996 * 109.43199 * 309.97461 * 21 20 18 43 43 H 1.09000 * 109.42589 * 190.05018 * 21 20 18 44 44 H 1.08996 * 109.69253 * 190.48834 * 22 21 20 45 45 H 1.08999 * 109.72447 * 69.92188 * 22 21 20 46 46 H 1.09002 * 110.07739 * 119.85304 * 29 15 14 47 47 H 1.08998 * 110.08010 * 241.36271 * 29 15 14 48 48 H 1.08998 * 108.15036 * 60.78317 * 32 9 7 49 49 H 1.08997 * 107.99467 * 304.10540 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0069 -1.2504 -0.4127 9 7 1.4312 -2.3268 0.5250 10 6 0.4567 -2.1231 1.5518 11 6 -0.0302 -3.4048 2.1987 12 6 -0.1661 -4.5336 1.1765 13 1 -0.9541 -4.3509 0.4458 14 6 -0.3749 -5.8465 1.9921 15 7 0.9596 -6.1366 2.5562 16 6 1.2054 -6.8391 3.6797 17 8 0.2843 -7.2159 4.3730 18 6 2.6246 -7.1562 4.0749 19 1 3.2996 -6.4160 3.6454 20 6 3.0018 -8.5549 3.5693 21 6 4.3348 -8.9819 4.1905 22 6 4.1414 -9.2537 5.6879 23 6 3.4198 -8.0786 6.2934 24 7 3.3018 -7.7340 7.5716 25 7 2.6022 -6.6524 7.6441 26 7 2.2514 -6.2669 6.4629 27 1 1.7218 -5.4817 6.2531 28 6 2.7478 -7.1453 5.5752 29 6 1.9779 -5.5264 1.6787 30 6 1.2058 -4.8110 0.5304 31 1 1.0702 -5.5166 -0.2892 32 6 1.8847 -3.5862 -0.0059 33 1 -0.4851 0.8400 -0.0004 34 1 -0.3931 -1.6164 1.0946 35 1 0.8728 -1.4767 2.3244 36 1 -1.0007 -3.2240 2.6607 37 1 0.6790 -3.7063 2.9697 38 1 -1.1005 -5.6888 2.7901 39 1 -0.6990 -6.6553 1.3372 40 1 2.2254 -9.2653 3.8531 41 1 3.0963 -8.5353 2.4835 42 1 5.0681 -8.1865 4.0576 43 1 4.6895 -9.8883 3.6999 44 1 5.1126 -9.3751 6.1676 45 1 3.5488 -10.1584 5.8241 46 1 2.5659 -4.7985 2.2378 47 1 2.6295 -6.2980 1.2687 48 1 2.9525 -3.6744 0.1944 49 1 1.7447 -3.5660 -1.0867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088084817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:47 Heat of formation + Delta-G solvation = 81.449247 kcal Electronic energy + Delta-G solvation = -31590.304880 eV Core-core repulsion = 27554.594234 eV Total energy + Delta-G solvation = -4035.710646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.64780 -40.61748 -38.81006 -37.03478 -35.83569 -34.00348 -32.78765 -31.67881 -30.93741 -30.46704 -30.18610 -28.02840 -25.90794 -24.96707 -23.75280 -23.19624 -22.90476 -22.20434 -21.60562 -20.07367 -19.59693 -18.26211 -17.96472 -17.45814 -17.14622 -16.17985 -16.04293 -15.35439 -15.24770 -15.00926 -14.75958 -14.27190 -14.13448 -14.06283 -13.91911 -13.77752 -13.30143 -13.14850 -12.81443 -12.78101 -12.54560 -12.41209 -11.95618 -11.84973 -11.67941 -11.65939 -11.40306 -11.38606 -11.24892 -10.91344 -10.81704 -10.65373 -10.53550 -10.39404 -10.31788 -10.06312 -9.85418 -9.78088 -9.68308 -9.09457 -8.77670 -8.54796 -6.70264 -5.72283 -3.37372 1.36325 2.27815 2.32735 2.54396 2.77459 3.31141 3.39682 3.42842 3.88154 4.14856 4.18996 4.39025 4.41172 4.52261 4.53967 4.69271 4.80054 4.87094 4.94454 4.98837 5.08855 5.19274 5.25932 5.29796 5.37071 5.42958 5.45248 5.50737 5.55000 5.65103 5.68178 5.71928 5.77489 5.82034 5.86780 5.97640 6.01771 6.06869 6.17385 6.40734 6.45679 6.53207 6.64198 6.65027 6.73167 7.18605 7.32532 7.72223 7.83120 7.88184 8.28820 8.44847 9.20388 9.90510 10.18140 11.13005 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002851 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.708745 B = 9817.812841 C =10230.977389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.009 3.991 3 Si 0.896 3.104 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.274 4.274 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.151 3.849 11 C -0.118 4.118 12 C -0.083 4.083 13 H 0.102 0.898 14 C 0.105 3.895 15 N -0.608 5.608 16 C 0.528 3.472 17 O -0.538 6.538 18 C -0.031 4.031 19 H 0.112 0.888 20 C -0.103 4.103 21 C -0.117 4.117 22 C -0.034 4.034 23 C -0.012 4.012 24 N -0.261 5.261 25 N -0.085 5.085 26 N -0.369 5.369 27 H 0.449 0.551 28 C 0.009 3.991 29 C 0.102 3.898 30 C -0.095 4.095 31 H 0.075 0.925 32 C 0.175 3.825 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.014 0.986 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.014 0.986 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.443 -17.433 4.052 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.191 4.191 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.404 4.404 8 H 0.083 0.917 9 N -0.307 5.307 10 C 0.026 3.974 11 C -0.156 4.156 12 C -0.103 4.103 13 H 0.120 0.880 14 C -0.017 4.017 15 N -0.342 5.342 16 C 0.315 3.685 17 O -0.415 6.415 18 C -0.055 4.055 19 H 0.130 0.870 20 C -0.141 4.141 21 C -0.155 4.155 22 C -0.073 4.073 23 C -0.153 4.153 24 N -0.126 5.126 25 N -0.064 5.064 26 N -0.087 5.087 27 H 0.295 0.705 28 C -0.127 4.127 29 C -0.020 4.020 30 C -0.114 4.114 31 H 0.094 0.906 32 C 0.049 3.951 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.032 0.968 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.809 -17.403 6.125 19.066 hybrid contribution 0.023 1.451 -1.229 1.901 sum 4.832 -15.952 4.897 17.373 Atomic orbital electron populations 1.69990 1.05586 1.25573 1.51592 1.24941 0.94893 0.98595 1.00721 0.86408 0.79546 0.83700 0.77817 1.21300 1.21501 1.20488 1.19067 0.96979 0.86908 1.37399 0.91680 1.42296 1.47358 1.00916 1.40123 1.20007 0.95410 0.92226 0.89757 1.21561 1.00376 0.96484 0.97155 1.22250 0.97357 0.93322 0.97334 0.87983 1.22730 0.84371 0.97244 0.97349 1.48697 1.09335 1.52067 1.24060 1.19986 0.90549 0.78053 0.79939 1.90747 1.46086 1.53087 1.51626 1.19958 0.95416 1.01828 0.88272 0.87014 1.21551 0.98752 0.92804 1.01016 1.21650 0.96758 1.02654 0.94456 1.19991 0.99879 0.93237 0.94205 1.21640 1.04222 0.99782 0.89629 1.74812 1.13275 1.06085 1.18468 1.78569 1.14367 1.10081 1.03349 1.44659 1.36863 1.21937 1.05258 0.70542 1.21174 1.03257 0.94613 0.93686 1.22656 0.90942 0.96603 0.91817 1.21860 0.95378 0.98172 0.96001 0.90634 1.19340 0.95402 0.84369 0.96038 0.93595 0.90210 0.96760 0.92483 0.93744 0.90310 0.91454 0.90271 0.89743 0.90864 0.89819 0.89465 0.89713 0.90747 0.91091 0.96843 0.95435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.40 10.99 55.49 0.61 -23.79 16 2 C 0.01 0.23 4.91 -17.43 -0.09 0.15 16 3 Si 0.90 20.84 29.63 -169.99 -5.04 15.81 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.27 -7.11 9.24 -15.06 -0.14 -7.25 16 8 H 0.07 1.67 7.95 -52.48 -0.42 1.25 16 9 N -0.58 -13.34 3.19 -180.58 -0.58 -13.92 16 10 C 0.15 3.35 5.14 -6.59 -0.03 3.32 16 11 C -0.12 -2.00 4.97 -27.49 -0.14 -2.13 16 12 C -0.08 -1.20 3.72 -88.48 -0.33 -1.53 16 13 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 14 C 0.10 1.32 6.27 -1.76 -0.01 1.31 16 15 N -0.61 -7.29 2.81 -168.18 -0.47 -7.76 16 16 C 0.53 6.57 6.81 -10.99 -0.07 6.50 16 17 O -0.54 -8.61 16.66 5.56 0.09 -8.52 16 18 C -0.03 -0.30 2.61 -92.78 -0.24 -0.55 16 19 H 0.11 0.93 7.00 -51.93 -0.36 0.57 16 20 C -0.10 -0.77 5.21 -26.44 -0.14 -0.90 16 21 C -0.12 -0.70 5.90 -26.45 -0.16 -0.86 16 22 C -0.03 -0.27 6.31 -27.72 -0.17 -0.45 16 23 C -0.01 -0.15 7.11 -83.12 -0.59 -0.74 16 24 N -0.26 -3.83 12.40 33.16 0.41 -3.42 16 25 N -0.08 -1.24 13.40 60.35 0.81 -0.43 16 26 N -0.37 -4.65 6.89 33.39 0.23 -4.42 16 27 H 0.45 4.83 8.96 -190.07 -1.70 3.13 16 28 C 0.01 0.11 5.97 -82.50 -0.49 -0.38 16 29 C 0.10 1.16 4.80 -1.95 -0.01 1.15 16 30 C -0.09 -1.30 2.77 -90.05 -0.25 -1.55 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 C 0.17 3.18 5.73 -6.88 -0.04 3.15 16 33 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.08 2.05 5.67 -51.93 -0.29 1.76 16 35 H 0.01 0.35 8.13 -51.93 -0.42 -0.07 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.04 0.73 6.77 -51.93 -0.35 0.38 16 38 H 0.08 1.06 7.87 -51.93 -0.41 0.65 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.01 0.24 7.86 -51.93 -0.41 -0.16 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -32.27 378.62 -10.10 -42.38 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.97 Total: -0.84 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.90 Total: -0.78 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 1.01 Total: -53.75 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.04 Total: 15.81 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.27 -10.10 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088084817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.826 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds