Wall clock time and date at job start Sat Apr 11 2020 07:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48500 * 109.47072 * 269.99930 * 3 2 1 5 5 H 1.48507 * 109.46727 * 29.99888 * 3 2 1 6 6 H 1.48495 * 109.47331 * 149.99509 * 3 2 1 7 7 C 1.38813 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99677 * 153.78109 * 7 2 1 9 9 N 1.36937 * 120.00181 * 333.77791 * 7 2 1 10 10 C 1.43013 * 116.49331 * 332.39119 * 9 7 2 11 11 C 1.51601 * 113.87980 * 186.56788 * 10 9 7 12 12 C 1.52894 * 111.55465 * 322.34514 * 11 10 9 13 13 H 1.09007 * 112.87630 * 293.25988 * 12 11 10 14 14 C 1.55965 * 106.48421 * 168.38686 * 12 11 10 15 15 N 1.47764 * 104.12245 * 286.22180 * 14 12 11 16 16 C 1.34768 * 125.82331 * 154.13096 * 15 14 12 17 17 O 1.21282 * 120.00069 * 354.84853 * 16 15 14 18 18 C 1.50694 * 120.00228 * 174.85456 * 16 15 14 19 19 H 1.08996 * 109.69228 * 25.14557 * 18 16 15 20 20 C 1.53435 * 109.69383 * 264.59948 * 18 16 15 21 21 C 1.53133 * 109.54268 * 190.60667 * 20 18 16 22 22 C 1.53419 * 109.60895 * 70.01735 * 21 20 18 23 23 C 1.50599 * 108.33289 * 310.19503 * 22 21 20 24 24 N 1.32916 * 129.15706 * 196.61169 * 23 22 21 25 25 N 1.29024 * 108.63433 * 179.77348 * 24 23 22 26 26 N 1.29110 * 110.25561 * 0.02562 * 25 24 23 27 27 H 0.97005 * 126.00433 * 180.02562 * 26 25 24 28 28 C 1.34391 * 107.98811 * 0.07365 * 26 25 24 29 29 C 1.47621 * 108.35756 * 334.10547 * 15 14 12 30 30 C 1.54160 * 109.50641 * 60.23378 * 12 11 10 31 31 H 1.09005 * 108.71611 * 187.74380 * 30 12 11 32 32 C 1.44000 * 116.35404 * 153.21494 * 9 7 2 33 33 H 0.97001 * 120.00679 * 0.02562 * 1 2 3 34 34 H 1.08999 * 107.23835 * 66.19738 * 10 9 7 35 35 H 1.08999 * 109.46776 * 308.53436 * 10 9 7 36 36 H 1.08999 * 109.06335 * 201.80644 * 11 10 9 37 37 H 1.08999 * 109.06917 * 82.87633 * 11 10 9 38 38 H 1.09003 * 110.50261 * 44.87665 * 14 12 11 39 39 H 1.08997 * 110.50266 * 167.42176 * 14 12 11 40 40 H 1.08998 * 109.45953 * 310.59940 * 20 18 16 41 41 H 1.09004 * 109.45713 * 70.55007 * 20 18 16 42 42 H 1.08996 * 109.43199 * 309.97461 * 21 20 18 43 43 H 1.09000 * 109.42589 * 190.05018 * 21 20 18 44 44 H 1.08996 * 109.69253 * 190.48834 * 22 21 20 45 45 H 1.08999 * 109.72447 * 69.92188 * 22 21 20 46 46 H 1.09002 * 110.07739 * 119.85304 * 29 15 14 47 47 H 1.08998 * 110.08010 * 241.36271 * 29 15 14 48 48 H 1.08998 * 108.15036 * 60.78317 * 32 9 7 49 49 H 1.08997 * 107.99467 * 304.10540 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0069 -1.2504 -0.4127 9 7 1.4312 -2.3268 0.5250 10 6 0.4567 -2.1231 1.5518 11 6 -0.0302 -3.4048 2.1987 12 6 -0.1661 -4.5336 1.1765 13 1 -0.9541 -4.3509 0.4458 14 6 -0.3749 -5.8465 1.9921 15 7 0.9596 -6.1366 2.5562 16 6 1.2054 -6.8391 3.6797 17 8 0.2843 -7.2159 4.3730 18 6 2.6246 -7.1562 4.0749 19 1 3.2996 -6.4160 3.6454 20 6 3.0018 -8.5549 3.5693 21 6 4.3348 -8.9819 4.1905 22 6 4.1414 -9.2537 5.6879 23 6 3.4198 -8.0786 6.2934 24 7 3.3018 -7.7340 7.5716 25 7 2.6022 -6.6524 7.6441 26 7 2.2514 -6.2669 6.4629 27 1 1.7218 -5.4817 6.2531 28 6 2.7478 -7.1453 5.5752 29 6 1.9779 -5.5264 1.6787 30 6 1.2058 -4.8110 0.5304 31 1 1.0702 -5.5166 -0.2892 32 6 1.8847 -3.5862 -0.0059 33 1 -0.4851 0.8400 -0.0004 34 1 -0.3931 -1.6164 1.0946 35 1 0.8728 -1.4767 2.3244 36 1 -1.0007 -3.2240 2.6607 37 1 0.6790 -3.7063 2.9697 38 1 -1.1005 -5.6888 2.7901 39 1 -0.6990 -6.6553 1.3372 40 1 2.2254 -9.2653 3.8531 41 1 3.0963 -8.5353 2.4835 42 1 5.0681 -8.1865 4.0576 43 1 4.6895 -9.8883 3.6999 44 1 5.1126 -9.3751 6.1676 45 1 3.5488 -10.1584 5.8241 46 1 2.5659 -4.7985 2.2378 47 1 2.6295 -6.2980 1.2687 48 1 2.9525 -3.6744 0.1944 49 1 1.7447 -3.5660 -1.0867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088084817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:46 Heat of formation + Delta-G solvation = 60.419801 kcal Electronic energy + Delta-G solvation = -31591.216785 eV Core-core repulsion = 27554.594234 eV Total energy + Delta-G solvation = -4036.622551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.58363 -41.67185 -39.96868 -37.80215 -37.31570 -34.94690 -34.26289 -33.10502 -32.21131 -31.40932 -31.18211 -29.25148 -27.22293 -26.06357 -25.04666 -24.24055 -23.68653 -23.54251 -22.94498 -20.88675 -20.43838 -19.51175 -19.00676 -18.89400 -18.33759 -17.19438 -17.16216 -16.85429 -16.34273 -16.07206 -15.81511 -15.62789 -15.49644 -14.97651 -14.85345 -14.73987 -14.58546 -14.44628 -14.00474 -13.81601 -13.73602 -13.40022 -13.15194 -13.00568 -12.88946 -12.71832 -12.53554 -12.47123 -12.37741 -12.24349 -12.07022 -11.98220 -11.76869 -11.63020 -11.51313 -11.37496 -11.29041 -11.18571 -10.92173 -10.52328 -9.98940 -9.73156 -8.64721 -7.69057 -5.39161 0.42542 1.34624 1.38716 1.44087 1.48178 1.56496 1.67561 1.83971 2.50768 3.07033 3.20652 3.27623 3.43098 3.46105 3.65981 3.74378 3.78571 3.85521 3.91098 4.07520 4.15231 4.24986 4.29887 4.36716 4.43919 4.47618 4.55115 4.61805 4.64964 4.68113 4.78021 4.90025 4.90809 4.95668 4.98800 5.06500 5.07629 5.09610 5.18734 5.19509 5.29389 5.31618 5.35450 5.42101 5.43213 5.69807 5.74127 5.94017 6.37868 6.45029 6.93662 7.22995 7.31341 8.09734 8.23925 9.10624 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002851 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.708745 B = 9817.812841 C =10230.977389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.042 4.042 3 Si 0.953 3.047 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.283 4.283 8 H 0.066 0.934 9 N -0.594 5.594 10 C 0.161 3.839 11 C -0.106 4.106 12 C -0.083 4.083 13 H 0.096 0.904 14 C 0.114 3.886 15 N -0.606 5.606 16 C 0.530 3.470 17 O -0.578 6.578 18 C -0.025 4.025 19 H 0.134 0.866 20 C -0.101 4.101 21 C -0.109 4.109 22 C -0.038 4.038 23 C -0.018 4.018 24 N -0.291 5.291 25 N -0.118 5.118 26 N -0.369 5.369 27 H 0.453 0.547 28 C 0.006 3.994 29 C 0.109 3.891 30 C -0.092 4.092 31 H 0.106 0.894 32 C 0.170 3.830 33 H 0.249 0.751 34 H 0.044 0.956 35 H -0.019 1.019 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.114 0.886 48 H 0.027 0.973 49 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 -19.930 2.690 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.239 4.239 3 Si 0.781 3.219 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.414 4.414 8 H 0.084 0.916 9 N -0.318 5.318 10 C 0.035 3.965 11 C -0.144 4.144 12 C -0.102 4.102 13 H 0.114 0.886 14 C -0.008 4.008 15 N -0.338 5.338 16 C 0.319 3.681 17 O -0.458 6.458 18 C -0.049 4.049 19 H 0.151 0.849 20 C -0.139 4.139 21 C -0.147 4.147 22 C -0.077 4.077 23 C -0.159 4.159 24 N -0.156 5.156 25 N -0.096 5.096 26 N -0.088 5.088 27 H 0.299 0.701 28 C -0.132 4.132 29 C -0.013 4.013 30 C -0.111 4.111 31 H 0.124 0.876 32 C 0.045 3.955 33 H 0.058 0.942 34 H 0.061 0.939 35 H -0.001 1.001 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.100 0.900 43 H 0.131 0.869 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.132 0.868 48 H 0.044 0.956 49 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 6.778 -19.910 4.756 21.563 hybrid contribution -0.584 2.239 -0.838 2.460 sum 6.194 -17.672 3.918 19.131 Atomic orbital electron populations 1.70148 1.06777 1.25672 1.53245 1.25627 0.95549 1.01352 1.01416 0.85509 0.78396 0.80247 0.77732 1.20837 1.22190 1.19887 1.19410 0.97140 0.88338 1.36491 0.91613 1.42531 1.47035 1.02087 1.40129 1.19713 0.93755 0.94224 0.88758 1.21393 1.00284 0.95087 0.97675 1.22172 0.98049 0.93184 0.96812 0.88607 1.22601 0.84651 0.96577 0.96962 1.48698 1.09245 1.51707 1.24121 1.20389 0.91220 0.77235 0.79260 1.90741 1.47592 1.54745 1.52750 1.20135 0.93838 1.04169 0.86717 0.84879 1.21652 0.99019 0.90586 1.02667 1.21666 0.96090 1.04296 0.92605 1.20241 0.99915 0.91762 0.95737 1.22382 1.04031 1.00730 0.88750 1.74767 1.14027 1.06501 1.20269 1.78518 1.15749 1.10927 1.04422 1.44735 1.36637 1.22204 1.05175 0.70070 1.21666 1.02642 0.94098 0.94776 1.22682 0.90522 0.97494 0.90606 1.21779 0.94544 0.96833 0.97973 0.87581 1.19481 0.96398 0.84241 0.95378 0.94174 0.93915 1.00081 0.92323 0.93026 0.91542 0.89142 0.91579 0.86986 0.90045 0.86927 0.88479 0.89156 0.91514 0.86770 0.95555 0.96659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.11 10.99 21.65 0.24 -51.87 16 2 C -0.04 -2.27 4.91 84.86 0.42 -1.85 16 3 Si 0.95 43.52 29.63 68.60 2.03 45.55 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.28 -14.81 9.24 84.03 0.78 -14.04 16 8 H 0.07 3.36 7.95 -2.91 -0.02 3.33 16 9 N -0.59 -27.26 3.19 -725.24 -2.31 -29.58 16 10 C 0.16 7.36 5.14 86.56 0.45 7.80 16 11 C -0.11 -3.59 4.97 30.10 0.15 -3.44 16 12 C -0.08 -2.24 3.72 -9.41 -0.04 -2.27 16 13 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 14 C 0.11 2.55 6.27 87.16 0.55 3.10 16 15 N -0.61 -12.41 2.81 -804.38 -2.26 -14.67 16 16 C 0.53 11.78 6.81 87.66 0.60 12.37 16 17 O -0.58 -17.71 16.66 -3.04 -0.05 -17.76 16 18 C -0.03 -0.41 2.61 -12.19 -0.03 -0.44 16 19 H 0.13 1.62 7.00 -2.39 -0.02 1.60 16 20 C -0.10 -1.06 5.21 30.78 0.16 -0.90 16 21 C -0.11 -0.81 5.90 30.78 0.18 -0.63 16 22 C -0.04 -0.50 6.31 29.96 0.19 -0.31 16 23 C -0.02 -0.41 7.11 41.75 0.30 -0.11 16 24 N -0.29 -8.55 12.40 -48.99 -0.61 -9.16 16 25 N -0.12 -3.52 13.40 37.02 0.50 -3.03 16 26 N -0.37 -9.25 6.89 -48.27 -0.33 -9.58 16 27 H 0.45 9.86 8.96 -219.67 -1.97 7.89 16 28 C 0.01 0.12 5.97 41.50 0.25 0.37 16 29 C 0.11 1.97 4.80 87.12 0.42 2.39 16 30 C -0.09 -2.23 2.77 -10.42 -0.03 -2.26 16 31 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 32 C 0.17 5.89 5.73 85.86 0.49 6.38 16 33 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 34 H 0.04 2.32 5.67 -2.39 -0.01 2.31 16 35 H -0.02 -0.96 8.13 -2.39 -0.02 -0.98 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.66 6.77 -2.39 -0.02 1.64 16 38 H 0.07 1.69 7.87 -2.39 -0.02 1.67 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 41 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16 43 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.37 7.73 -2.39 -0.02 1.35 16 47 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.03 0.87 7.86 -2.39 -0.02 0.85 16 49 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -74.05 378.62 1.03 -73.02 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -1.00 Total: 10.91 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.82 Total: 6.17 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -4.78 Total: -117.89 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.05 Total: -17.76 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.05 1.03 -73.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088084817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.438 kcal (2) G-P(sol) polarization free energy of solvation -74.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds